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Homeobox protein SEBOX (Homeobox OG-9) (Skin-, embryo-, brain- and oocyte-specific homeobox)

 SEBOX_MOUSE             Reviewed;         190 AA.
P70368;
13-NOV-2007, integrated into UniProtKB/Swiss-Prot.
01-MAR-2001, sequence version 2.
20-JUN-2018, entry version 136.
RecName: Full=Homeobox protein SEBOX;
AltName: Full=Homeobox OG-9;
AltName: Full=Skin-, embryo-, brain- and oocyte-specific homeobox;
Name=Sebox; Synonyms=Og9x;
Mus musculus (Mouse).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
NCBI_TaxID=10090;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], TISSUE SPECIFICITY, AND
DEVELOPMENTAL STAGE.
PubMed=10922053; DOI=10.1073/pnas.97.16.8904;
Cinquanta M., Rovescalli A.C., Kozak C.A., Nirenberg M.;
"Mouse Sebox homeobox gene expression in skin, brain, oocytes, and
two-cell embryos.";
Proc. Natl. Acad. Sci. U.S.A. 97:8904-8909(2000).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=C57BL/6J; TISSUE=Ovary;
PubMed=16141072; DOI=10.1126/science.1112014;
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N.,
Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K.,
Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M.,
Davis M.J., Wilming L.G., Aidinis V., Allen J.E.,
Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L.,
Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M.,
Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R.,
Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G.,
di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G.,
Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M.,
Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E.,
Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N.,
Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T.,
Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H.,
Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K.,
Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J.,
Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L.,
Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K.,
Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P.,
Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O.,
Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G.,
Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M.,
Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C.,
Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y.,
Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B.,
Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K.,
Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A.,
Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K.,
Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C.,
Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J.,
Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y.,
Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T.,
Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N.,
Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N.,
Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S.,
Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J.,
Hayashizaki Y.;
"The transcriptional landscape of the mammalian genome.";
Science 309:1559-1563(2005).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=C57BL/6J;
PubMed=19468303; DOI=10.1371/journal.pbio.1000112;
Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S.,
She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W.,
Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T.,
Zhou S., Teague B., Potamousis K., Churas C., Place M., Herschleb J.,
Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z.,
Lindblad-Toh K., Eichler E.E., Ponting C.P.;
"Lineage-specific biology revealed by a finished genome assembly of
the mouse.";
PLoS Biol. 7:E1000112-E1000112(2009).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Eye;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[5]
NUCLEOTIDE SEQUENCE [MRNA] OF 11-190, TISSUE SPECIFICITY, AND
DEVELOPMENTAL STAGE.
STRAIN=BALB/cJ;
PubMed=8855241; DOI=10.1073/pnas.93.20.10691;
Rovescalli A.C., Asoh S., Nirenberg M.W.;
"Cloning and characterization of four murine homeobox genes.";
Proc. Natl. Acad. Sci. U.S.A. 93:10691-10696(1996).
[6]
ERRATUM.
Rovescalli A.C., Asoh S., Nirenberg M.;
Proc. Natl. Acad. Sci. U.S.A. 93:15522-15522(1996).
-!- FUNCTION: Probable transcription factor involved in the control of
specification of mesoderm and endoderm. {ECO:0000250}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-
ProRule:PRU00108}.
-!- TISSUE SPECIFICITY: Expressed in brain, skin, ovary and liver.
Also expressed in maturing oocytes, eggs, zygotes and 2-cell
embryos, but not 4-cell embryos. {ECO:0000269|PubMed:10922053,
ECO:0000269|PubMed:8855241}.
-!- DEVELOPMENTAL STAGE: Expressed in embryos from day 7. Expression
is low in 12 day embryos and higher in 18 and 19 day embryos.
{ECO:0000269|PubMed:10922053, ECO:0000269|PubMed:8855241}.
-!- SIMILARITY: Belongs to the paired homeobox family. {ECO:0000305}.
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EMBL; U65068; AAC52829.2; -; Genomic_DNA.
EMBL; AK143429; BAE25374.1; -; mRNA.
EMBL; AL591177; CAI25548.1; -; Genomic_DNA.
EMBL; BC098184; AAH98184.1; -; mRNA.
CCDS; CCDS25107.1; -.
RefSeq; NP_032785.1; NM_008759.2.
UniGene; Mm.134360; -.
ProteinModelPortal; P70368; -.
SMR; P70368; -.
STRING; 10090.ENSMUSP00000001130; -.
PaxDb; P70368; -.
PRIDE; P70368; -.
Ensembl; ENSMUST00000001130; ENSMUSP00000001130; ENSMUSG00000001103.
GeneID; 18292; -.
KEGG; mmu:18292; -.
UCSC; uc007kjm.2; mouse.
CTD; 645832; -.
MGI; MGI:108012; Sebox.
eggNOG; KOG0490; Eukaryota.
eggNOG; ENOG410YIJ3; LUCA.
GeneTree; ENSGT00920000149180; -.
HOGENOM; HOG000231518; -.
HOVERGEN; HBG098434; -.
InParanoid; P70368; -.
OMA; KAVAPWG; -.
OrthoDB; EOG091G183Z; -.
PhylomeDB; P70368; -.
TreeFam; TF315976; -.
PRO; PR:P70368; -.
Proteomes; UP000000589; Chromosome 11.
Bgee; ENSMUSG00000001103; -.
CleanEx; MM_SEBOX; -.
ExpressionAtlas; P70368; baseline and differential.
Genevisible; P70368; MM.
GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO; GO:0009792; P:embryo development ending in birth or egg hatching; IMP:MGI.
GO; GO:0048477; P:oogenesis; IMP:MGI.
GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
CDD; cd00086; homeodomain; 1.
InterPro; IPR009057; Homeobox-like_sf.
InterPro; IPR001356; Homeobox_dom.
Pfam; PF00046; Homeobox; 1.
SMART; SM00389; HOX; 1.
SUPFAM; SSF46689; SSF46689; 1.
PROSITE; PS00027; HOMEOBOX_1; 1.
PROSITE; PS50071; HOMEOBOX_2; 1.
2: Evidence at transcript level;
Complete proteome; Developmental protein; Differentiation;
DNA-binding; Homeobox; Nucleus; Reference proteome; Transcription;
Transcription regulation.
CHAIN 1 190 Homeobox protein SEBOX.
/FTId=PRO_0000311337.
DNA_BIND 18 77 Homeobox. {ECO:0000255|PROSITE-
ProRule:PRU00108}.
SEQUENCE 190 AA; 20391 MW; 4D473850504129A3 CRC64;
MASPVEASPG CASGLGPHRR KRTTFSVGQL VELERVFAAR PYPDISTREH LAQVTHLPEA
KIQVWFQNRR AKRIKDRKPG ALNSRLELPP NSCSLPDTPQ LPWDPGTSSH PLHPTSSAQY
TSACPPQTSC LGPILGPGQS WSGAKVAAPW GTSGASGIHS SLEQIVPQTS LGNLSDLIYT
SAIVTNVDHF


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