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Homeobox-leucine zipper protein HDG6 (HD-ZIP protein HDG6) (Homeobox protein FWA) (Homeodomain GLABRA 2-like protein 6) (Homeodomain transcription factor HDG6) (Protein HOMEODOMAIN GLABROUS 6)

 FWA_ARATH               Reviewed;         686 AA.
Q9FVI6; O65608; Q9M0K7;
05-DEC-2001, integrated into UniProtKB/Swiss-Prot.
29-APR-2008, sequence version 2.
05-DEC-2018, entry version 145.
RecName: Full=Homeobox-leucine zipper protein HDG6;
AltName: Full=HD-ZIP protein HDG6;
AltName: Full=Homeobox protein FWA;
AltName: Full=Homeodomain GLABRA 2-like protein 6;
AltName: Full=Homeodomain transcription factor HDG6;
AltName: Full=Protein HOMEODOMAIN GLABROUS 6;
Name=HDG6; Synonyms=FWA, HDGL2-6; OrderedLocusNames=At4g25530;
ORFNames=M7J2.100;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA].
STRAIN=cv. Landsberg erecta;
PubMed=11090618; DOI=10.1016/S1097-2765(05)00090-0;
Soppe W.J.J., Jacobsen S.E., Alonso-Blanco C., Jackson J.P.,
Kakutani T., Koornneef M., Peeters A.J.M.;
"The late flowering phenotype of fwa mutants is caused by gain-of-
function epigenetic alleles of a homeodomain gene.";
Mol. Cell 6:791-802(2000).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10617198; DOI=10.1038/47134;
Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G.,
Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N.,
Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M.,
Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M.,
Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T.,
Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I.,
Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P.,
Langham S.-A., McCullagh B., Bilham L., Robben J.,
van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F.,
Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E.,
Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W.,
Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P.,
Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H.,
De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R.,
van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S.,
Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R.,
Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S.,
Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H.,
Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S.,
Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A.,
Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R.,
Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S.,
Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E.,
Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A.,
Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T.,
Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C.,
Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S.,
Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K.,
Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L.,
Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J.,
Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J.,
Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D.,
Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D.,
Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C.,
Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C.,
Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R.,
Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S.,
Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A.,
Chen E., Marra M.A., Martienssen R., McCombie W.R.;
"Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana.";
Nature 402:769-777(1999).
[3]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[4]
GENE FAMILY.
PubMed=10809443; DOI=10.1023/A:1006368316413;
Tavares R., Aubourg S., Lecharny A., Kreis M.;
"Organization and structural evolution of four multigene families in
Arabidopsis thaliana: AtLCAD, AtLGT, AtMYST and AtHD-GL2.";
Plant Mol. Biol. 42:703-717(2000).
[5]
GENE FAMILY, AND NOMENCLATURE.
PubMed=16778018; DOI=10.1104/pp.106.077388;
Nakamura M., Katsumata H., Abe M., Yabe N., Komeda Y., Yamamoto K.T.,
Takahashi T.;
"Characterization of the class IV homeodomain-leucine zipper gene
family in Arabidopsis.";
Plant Physiol. 141:1363-1375(2006).
[6]
REGULATION.
PubMed=17921315; DOI=10.1105/tpc.107.052373;
Jiang D., Yang W., He Y., Amasino R.M.;
"Arabidopsis relatives of the human lysine-specific demethylase1
repress the expression of FWA and FLOWERING LOCUS C and thus promote
the floral transition.";
Plant Cell 19:2975-2987(2007).
[7]
FUNCTION, TISSUE SPECIFICITY, AND INTERACTION WITH FT.
PubMed=17189287; DOI=10.1093/pcp/pcl061;
Ikeda Y., Kobayashi Y., Yamaguchi A., Abe M., Araki T.;
"Molecular basis of late-flowering phenotype caused by dominant epi-
alleles of the FWA locus in Arabidopsis.";
Plant Cell Physiol. 48:205-220(2007).
-!- FUNCTION: Probable transcription factor involved in the regulation
of time of flowering through the photoperiod flowering pathway.
May repress FT. {ECO:0000269|PubMed:17189287}.
-!- SUBUNIT: Interacts with FT. {ECO:0000269|PubMed:17189287}.
-!- INTERACTION:
Q9SXZ2:FT; NbExp=2; IntAct=EBI-1393271, EBI-636490;
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
-!- TISSUE SPECIFICITY: Expressed in siliques, ovules and germinating
seeds. {ECO:0000269|PubMed:17189287}.
-!- DEVELOPMENTAL STAGE: Detected in siliques from 3 days after
pollination until maturity of seeds.
-!- MISCELLANEOUS: Under epigenetic control. In wild-type plant, FWA
is silenced in the sporophyte. The epi-allele fwa mutants (which
do not have a change in the nucleotide sequence of FWA) cause a
late-flowering phenotype due to ectopic FWA expression in
sporophytic tissues. Repression of FWA is dependent on histone H3
'Lys-4' methylation and cytosine methylation which are partly
controlled by the lysine-specific demthylase 1 (LSD1) homologs,
LDL1 and LDL2.
-!- SIMILARITY: Belongs to the HD-ZIP homeobox family. Class IV
subfamily. {ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=CAA18173.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
Sequence=CAB81363.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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EMBL; AF178688; AAG09302.1; -; Genomic_DNA.
EMBL; AF243535; AAK28350.1; -; mRNA.
EMBL; AL022197; CAA18173.1; ALT_SEQ; Genomic_DNA.
EMBL; AL161563; CAB81363.1; ALT_SEQ; Genomic_DNA.
EMBL; CP002687; AEE85074.1; -; Genomic_DNA.
PIR; A85295; A85295.
RefSeq; NP_567722.1; NM_118685.3.
UniGene; At.2139; -.
ProteinModelPortal; Q9FVI6; -.
SMR; Q9FVI6; -.
BioGrid; 13945; 8.
IntAct; Q9FVI6; 1.
STRING; 3702.AT4G25530.1; -.
PaxDb; Q9FVI6; -.
EnsemblPlants; AT4G25530.1; AT4G25530.1; AT4G25530.
GeneID; 828658; -.
Gramene; AT4G25530.1; AT4G25530.1; AT4G25530.
KEGG; ath:AT4G25530; -.
Araport; AT4G25530; -.
TAIR; locus:2131814; AT4G25530.
eggNOG; ENOG410JQ5B; Eukaryota.
eggNOG; ENOG410ZPYC; LUCA.
HOGENOM; HOG000243256; -.
InParanoid; Q9FVI6; -.
OMA; FRYISSP; -.
OrthoDB; EOG09360E0H; -.
PhylomeDB; Q9FVI6; -.
PRO; PR:Q9FVI6; -.
Proteomes; UP000006548; Chromosome 4.
ExpressionAtlas; Q9FVI6; baseline and differential.
Genevisible; Q9FVI6; AT.
GO; GO:0005634; C:nucleus; IDA:TAIR.
GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
GO; GO:0008289; F:lipid binding; IEA:InterPro.
GO; GO:0042803; F:protein homodimerization activity; IPI:TAIR.
GO; GO:0031047; P:gene silencing by RNA; IMP:TAIR.
GO; GO:0007275; P:multicellular organism development; IEA:UniProtKB-KW.
GO; GO:0009911; P:positive regulation of flower development; IMP:TAIR.
GO; GO:0006349; P:regulation of gene expression by genetic imprinting; IEP:TAIR.
CDD; cd00086; homeodomain; 1.
InterPro; IPR009057; Homeobox-like_sf.
InterPro; IPR001356; Homeobox_dom.
InterPro; IPR002913; START_lipid-bd_dom.
Pfam; PF00046; Homeodomain; 1.
Pfam; PF01852; START; 1.
SMART; SM00389; HOX; 1.
SMART; SM00234; START; 1.
SUPFAM; SSF46689; SSF46689; 1.
PROSITE; PS50071; HOMEOBOX_2; 1.
PROSITE; PS50848; START; 1.
1: Evidence at protein level;
Coiled coil; Complete proteome; Developmental protein; DNA-binding;
Homeobox; Nucleus; Reference proteome; Transcription;
Transcription regulation.
CHAIN 1 686 Homeobox-leucine zipper protein HDG6.
/FTId=PRO_0000048877.
DOMAIN 206 439 START. {ECO:0000255|PROSITE-
ProRule:PRU00197}.
DNA_BIND 38 98 Homeobox. {ECO:0000255|PROSITE-
ProRule:PRU00108}.
COILED 103 170 {ECO:0000255}.
COMPBIAS 184 187 Poly-Ser.
CONFLICT 311 311 L -> I (in Ref. 1; AAG09302/AAK28350).
{ECO:0000305}.
SEQUENCE 686 AA; 76253 MW; D4E506F66532B184 CRC64;
MNGQGDLDAV GNIPKPGEAE GDEIDMINDM SGVNDQDGGR MRRTHRRTAY QTQELENFYM
ENPHPTEEQR YELGQRLNMG VNQVKNWFQN KRNLEKINND HLENVTLREE HDRLLATQDQ
LRSAMLRSLC NICGKATNCG DTEYEVQKLM AENANLEREI DQFNSRYLSH PKQRMVSTSE
QAPSSSSNPG INATPVLDFS GGTRTSEKET SIFLNLAITA LRELITLGEV DCPFWMIDPI
VRSKGVSKIY EKYRSSFNNV TKPPGQIVEA SRAKGLVPMT CVTLVKTLMD TGKWVNVFAP
IVPVASTHKV LSTGSGGTKS GSLQQIQAEF QVISPLVPKR KVTFIRYCKE IRQGLWVVVD
VTPTQNPTLL PYGCSKRLPS GLIIDDLSNG YSQVTWIEQA EYNESHIHQL YQPLIGYGIG
LGAKRWLATL QRHCESLSTL SSTNLTEISP GLSAKGATEI VKLAQRMTLN YYRGITSPSV
DKWQKIQVEN VAQNMSFMIR KNVNEPGELT GIVLSASTSV WLPVNQHTLF AFISHLSFRH
EWDILTNDTT MEETIRIQKA KRHGNIISLL KIVNNGMLVL QEIWNDASGA MVVYAPVETN
SIELVKRGEN SDSVKFLPSG FSIVPDGVNG SYHRGNTGGG CLLTFGLQIL VGINPTAALI
QGTVKSVETL MAHTIVKIKS ALDLQT


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