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Homeobox-leucine zipper protein REVOLUTA (HD-ZIP protein REV) (Homeodomain transcription factor REV) (Protein AMPHIVASAL VASCULAR BUNDLE 1) (Protein INTERFASCICULAR FIBERLESS 1)

 REV_ARATH               Reviewed;         842 AA.
Q9SE43; A5YZA2; A5YZA3; A5YZA4; A5YZA7; A5YZC3; Q9M5B6;
29-APR-2008, integrated into UniProtKB/Swiss-Prot.
01-MAR-2003, sequence version 2.
27-SEP-2017, entry version 127.
RecName: Full=Homeobox-leucine zipper protein REVOLUTA;
AltName: Full=HD-ZIP protein REV;
AltName: Full=Homeodomain transcription factor REV;
AltName: Full=Protein AMPHIVASAL VASCULAR BUNDLE 1;
AltName: Full=Protein INTERFASCICULAR FIBERLESS 1;
Name=REV; Synonyms=AVB1, IFL1; OrderedLocusNames=At5g60690;
ORFNames=MUP24.16;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA], FUNCTION, SUBCELLULAR
LOCATION, AND TISSUE SPECIFICITY.
STRAIN=cv. Columbia;
PubMed=10559440; DOI=10.1105/tpc.11.11.2139;
Zhong R., Ye Z.-H.;
"IFL1, a gene regulating interfascicular fiber differentiation in
Arabidopsis, encodes a homeodomain-leucine zipper protein.";
Plant Cell 11:2139-2152(1999).
[2]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=cv. Columbia;
PubMed=10715319; DOI=10.1105/tpc.12.3.315;
Ratcliffe O.J., Riechmann J.L., Zhang J.Z.;
"INTERFASCICULAR FIBERLESS1 is the same gene as REVOLUTA.";
Plant Cell 12:315-317(2000).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=9330910; DOI=10.1093/dnares/4.3.215;
Sato S., Kotani H., Nakamura Y., Kaneko T., Asamizu E., Fukami M.,
Miyajima N., Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. I. Sequence
features of the 1.6 Mb regions covered by twenty physically assigned
P1 clones.";
DNA Res. 4:215-230(1997).
[4]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
Hayashizaki Y., Shinozaki K.;
"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
[6]
NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 498-653, AND VARIANTS
624-THR-SER-625; SER-625; 625-SER--ILE-627 AND LEU-630.
STRAIN=cv. Ag-0, cv. An-1, cv. Br-0, cv. C24, cv. Ct-1, cv. Edi-0,
cv. Ga-0, cv. Kas-1, cv. Kin-0, cv. Landsberg erecta, cv. Ll-0,
cv. Lz-0, cv. Ms-0, cv. Mt-0, cv. Nd-1, cv. Nok-3, cv. Oy-0, cv. Se-0,
cv. Sorbo, cv. Tsu-1, cv. Van-0, cv. Wa-1, and cv. Wassilewskija;
PubMed=17435248; DOI=10.1534/genetics.107.071928;
Ehrenreich I.M., Stafford P.A., Purugganan M.D.;
"The genetic architecture of shoot branching in Arabidopsis thaliana:
a comparative assessment of candidate gene associations vs.
quantitative trait locus mapping.";
Genetics 176:1223-1236(2007).
[7]
FUNCTION.
PubMed=7555701;
Talbert P.B., Adler H.T., Parks D.W., Comai L.;
"The REVOLUTA gene is necessary for apical meristem development and
for limiting cell divisions in the leaves and stems of Arabidopsis
thaliana.";
Development 121:2723-2735(1995).
[8]
FUNCTION, DEVELOPMENTAL STAGE, AND MUTANT REVOLUTA.
PubMed=11169198; DOI=10.1046/j.1365-313x.2001.00959.x;
Otsuga D., DeGuzman B., Prigge M.J., Drews G.N., Clark S.E.;
"REVOLUTA regulates meristem initiation at lateral positions.";
Plant J. 25:223-236(2001).
[9]
FUNCTION, AND DISRUPTION PHENOTYPE.
PubMed=11402186; DOI=10.1104/pp.126.2.549;
Zhong R., Ye Z.-H.;
"Alteration of auxin polar transport in the Arabidopsis ifl1
mutants.";
Plant Physiol. 126:549-563(2001).
[10]
FUNCTION, INDUCTION, AND MUTAGENESIS OF PRO-190.
PubMed=15111711; DOI=10.1093/pcp/pch051;
Zhong R., Ye Z.-H.;
"Amphivasal vascular bundle 1, a gain-of-function mutation of the
IFL1/REV gene, is associated with alterations in the polarity of
leaves, stems and carpels.";
Plant Cell Physiol. 45:369-385(2004).
[11]
FUNCTION.
PubMed=15598805; DOI=10.1105/tpc.104.026161;
Prigge M.J., Otsuga D., Alonso J.M., Ecker J.R., Drews G.N.,
Clark S.E.;
"Class III homeodomain-leucine zipper gene family members have
overlapping, antagonistic, and distinct roles in Arabidopsis
development.";
Plant Cell 17:61-76(2005).
[12]
GENE FAMILY.
PubMed=16805899; DOI=10.1111/j.1525-142X.2006.00107.x;
Prigge M.J., Clark S.E.;
"Evolution of the class III HD-Zip gene family in land plants.";
Evol. Dev. 8:350-361(2006).
[13]
INTERACTION WITH ESR1 AND ESR2.
PubMed=17376809; DOI=10.1242/dev.001016;
Chandler J.W., Cole M., Flier A., Grewe B., Werr W.;
"The AP2 transcription factors DORNROSCHEN and DORNROSCHEN-LIKE
redundantly control Arabidopsis embryo patterning via interaction with
PHAVOLUTA.";
Development 134:1653-1662(2007).
[14]
INDUCTION.
PubMed=17237362; DOI=10.1093/pcp/pcm008;
Zhou G.-K., Kubo M., Zhong R., Demura T., Ye Z.-H.;
"Overexpression of miR165 affects apical meristem formation, organ
polarity establishment and vascular development in Arabidopsis.";
Plant Cell Physiol. 48:391-404(2007).
[15]
INTERACTION WITH ZPR1; ZPR2; ZPR3 AND ZPR4.
PubMed=18055602; DOI=10.1105/tpc.107.055772;
Wenkel S., Emery J., Hou B.H., Evans M.M., Barton M.K.;
"A feedback regulatory module formed by LITTLE ZIPPER and HD-ZIPIII
genes.";
Plant Cell 19:3379-3390(2007).
[16]
INTERACTION WITH ZPR3.
PubMed=18408069; DOI=10.1105/tpc.107.057448;
Kim Y.S., Kim S.G., Lee M., Lee I., Park H.Y., Seo P.J., Jung J.H.,
Kwon E.J., Suh S.W., Paek K.H., Park C.M.;
"HD-ZIP III activity is modulated by competitive inhibitors via a
feedback loop in Arabidopsis shoot apical meristem development.";
Plant Cell 20:920-933(2008).
[17]
FUNCTION.
PubMed=22781836; DOI=10.1016/j.mod.2012.06.007;
Brandt R., Xie Y., Musielak T., Graeff M., Stierhof Y.D., Huang H.,
Liu C.M., Wenkel S.;
"Control of stem cell homeostasis via interlocking microRNA and
microProtein feedback loops.";
Mech. Dev. 130:25-33(2013).
[18]
GENE FAMILY.
PubMed=25263420; DOI=10.1016/j.ympev.2014.06.017;
Floyd S.K., Ryan J.G., Conway S.J., Brenner E., Burris K.P.,
Burris J.N., Chen T., Edger P.P., Graham S.W., Leebens-Mack J.H.,
Pires J.C., Rothfels C.J., Sigel E.M., Stevenson D.W.,
Neal Stewart C. Jr., Wong G.K., Bowman J.L.;
"Origin of a novel regulatory module by duplication and degeneration
of an ancient plant transcription factor.";
Mol. Phylogenet. Evol. 81:159-173(2014).
-!- FUNCTION: Probable transcription factor involved in the regulation
of interfascicular fiber (cortical cells) and secondary xylem
differentiation in the inflorescence stems. Required for lateral
shoot meristems (LSMs) and flower meristems (FMs) initiation. May
be involved in the determination of vascular patterning and organ
polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186,
PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly
regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4
(PubMed:22781836). {ECO:0000269|PubMed:10559440,
ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186,
ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805,
ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
-!- SUBUNIT: Homodimer (Probable). Heterodimer with ZPR1, ZPR2, ZPR3
or ZPR4 (PubMed:18055602). Interacts with ESR1 and ESR2
(PubMed:17376809). Interacts with ZPR1, ZPR2, ZPR3 and ZPR4
(PubMed:18055602, PubMed:18408069). Heterodimerization with ZPR3
prevents DNA binding by REV (PubMed:18055602).
{ECO:0000269|PubMed:17376809, ECO:0000269|PubMed:18055602,
ECO:0000269|PubMed:18408069, ECO:0000305|PubMed:18055602}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:10559440}.
-!- TISSUE SPECIFICITY: Expressed in the interfascicular regions of
stem and vascular bundles of young roots and leaves.
{ECO:0000269|PubMed:10559440}.
-!- DEVELOPMENTAL STAGE: Expressed at the earliest stages and
throughout LSM initiation and development. In embryo development,
expressed at the heart stage until the 'walking stick' stage in
the adaxial portion of the cotyledon primordia, the shoot apical
meristem (SAM) and the vascular precursor cells of the hypocotyl
and root. In developing flowers, expressed first at stage 1 in the
center of L3 layer and then expands to the center of L2 and L1
layers. Expressed in the center of flower meristem through stages
4 and 5. At stage 6, expressed in the adaxial side of the carpel
primordia and then on the adaxial carpel face.
{ECO:0000269|PubMed:11169198}.
-!- INDUCTION: By auxin. Repressed by ZPR and miR165.
{ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362}.
-!- DISRUPTION PHENOTYPE: Plants display strongly reduced auxin polar
transport in inflorescence stems and hypocotyls. This phenotype is
probably due to altered cell differentiation and morphology.
{ECO:0000269|PubMed:11402186}.
-!- SIMILARITY: Belongs to the HD-ZIP homeobox family. Class III
subfamily. {ECO:0000305}.
-----------------------------------------------------------------------
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EMBL; AF188994; AAF15262.2; -; mRNA.
EMBL; AY170127; AAO11835.1; -; Genomic_DNA.
EMBL; AF233592; AAF42938.1; -; mRNA.
EMBL; AB005246; BAB09842.1; -; Genomic_DNA.
EMBL; CP002688; AED97367.1; -; Genomic_DNA.
EMBL; AK229564; BAF01416.1; -; mRNA.
EMBL; EF598684; ABR09120.1; -; Genomic_DNA.
EMBL; EF598685; ABR09121.1; -; Genomic_DNA.
EMBL; EF598686; ABR09122.1; -; Genomic_DNA.
EMBL; EF598687; ABR09123.1; -; Genomic_DNA.
EMBL; EF598688; ABR09124.1; -; Genomic_DNA.
EMBL; EF598689; ABR09125.1; -; Genomic_DNA.
EMBL; EF598690; ABR09126.1; -; Genomic_DNA.
EMBL; EF598691; ABR09127.1; -; Genomic_DNA.
EMBL; EF598692; ABR09128.1; -; Genomic_DNA.
EMBL; EF598693; ABR09129.1; -; Genomic_DNA.
EMBL; EF598694; ABR09130.1; -; Genomic_DNA.
EMBL; EF598695; ABR09131.1; -; Genomic_DNA.
EMBL; EF598696; ABR09132.1; -; Genomic_DNA.
EMBL; EF598697; ABR09133.1; -; Genomic_DNA.
EMBL; EF598698; ABR09134.1; -; Genomic_DNA.
EMBL; EF598699; ABR09135.1; -; Genomic_DNA.
EMBL; EF598700; ABR09136.1; -; Genomic_DNA.
EMBL; EF598701; ABR09137.1; -; Genomic_DNA.
EMBL; EF598702; ABR09138.1; -; Genomic_DNA.
EMBL; EF598703; ABR09139.1; -; Genomic_DNA.
EMBL; EF598704; ABR09140.1; -; Genomic_DNA.
EMBL; EF598705; ABR09141.1; -; Genomic_DNA.
EMBL; EF598706; ABR09142.1; -; Genomic_DNA.
RefSeq; NP_200877.1; NM_125462.4.
UniGene; At.49201; -.
UniGene; At.7238; -.
ProteinModelPortal; Q9SE43; -.
BioGrid; 21434; 4.
STRING; 3702.AT5G60690.1; -.
PaxDb; Q9SE43; -.
PRIDE; Q9SE43; -.
EnsemblPlants; AT5G60690.1; AT5G60690.1; AT5G60690.
GeneID; 836190; -.
Gramene; AT5G60690.1; AT5G60690.1; AT5G60690.
KEGG; ath:AT5G60690; -.
Araport; AT5G60690; -.
TAIR; locus:2175856; AT5G60690.
eggNOG; ENOG410IFHB; Eukaryota.
eggNOG; ENOG410ZJBV; LUCA.
KO; K09338; -.
OMA; IPLAHTV; -.
OrthoDB; EOG093601VR; -.
PhylomeDB; Q9SE43; -.
PRO; PR:Q9SE43; -.
Proteomes; UP000006548; Chromosome 5.
Genevisible; Q9SE43; AT.
GO; GO:0005634; C:nucleus; IDA:TAIR.
GO; GO:0008289; F:lipid binding; IEA:InterPro.
GO; GO:0043565; F:sequence-specific DNA binding; IPI:TAIR.
GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR.
GO; GO:0044212; F:transcription regulatory region DNA binding; IPI:TAIR.
GO; GO:0030154; P:cell differentiation; IMP:TAIR.
GO; GO:0009855; P:determination of bilateral symmetry; IMP:TAIR.
GO; GO:0010014; P:meristem initiation; IMP:TAIR.
GO; GO:0009944; P:polarity specification of adaxial/abaxial axis; IMP:TAIR.
GO; GO:0009956; P:radial pattern formation; IMP:TAIR.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
GO; GO:0010051; P:xylem and phloem pattern formation; IMP:TAIR.
GO; GO:0010089; P:xylem development; IMP:TAIR.
CDD; cd00086; homeodomain; 1.
Gene3D; 3.30.530.20; -; 1.
InterPro; IPR009057; Homeobox-like.
InterPro; IPR001356; Homeobox_dom.
InterPro; IPR013978; MEKHLA.
InterPro; IPR023393; START-like_dom.
InterPro; IPR002913; START_lipid-bd_dom.
Pfam; PF00046; Homeobox; 1.
Pfam; PF08670; MEKHLA; 1.
Pfam; PF01852; START; 1.
SMART; SM00389; HOX; 1.
SMART; SM00234; START; 1.
SUPFAM; SSF46689; SSF46689; 1.
PROSITE; PS50071; HOMEOBOX_2; 1.
PROSITE; PS50848; START; 1.
1: Evidence at protein level;
Coiled coil; Complete proteome; Differentiation; DNA-binding;
Homeobox; Nucleus; Reference proteome; Transcription;
Transcription regulation.
CHAIN 1 842 Homeobox-leucine zipper protein REVOLUTA.
/FTId=PRO_0000331736.
DOMAIN 151 379 START. {ECO:0000255|PROSITE-
ProRule:PRU00197}.
DNA_BIND 22 85 Homeobox. {ECO:0000255|PROSITE-
ProRule:PRU00108}.
COILED 89 122 {ECO:0000255}.
COMPBIAS 624 630 Poly-Ser.
COMPBIAS 825 828 Poly-Asn.
VARIANT 624 625 SF -> TS (in strain: cv. Ag-0).
VARIANT 625 627 FSS -> SSI (in strain: cv. C24).
VARIANT 625 625 F -> S (in strain: cv. Br-0, cv. Ct-1,
cv. Edi-0, cv. Ga-0, cv. Landsberg
erecta, cv. Ll-0, cv. Lz-0, cv. Ms-0, cv.
Sorbo, cv. Tu-1, cv. Wa-1 and cv.
Wassilewskija).
{ECO:0000269|PubMed:17435248}.
VARIANT 630 630 S -> L (in strain: cv. Nd-1).
{ECO:0000269|PubMed:17435248}.
MUTAGEN 190 190 P->L: In avb1; gain of function.
Transformation of the collateral vascular
bundles into amphivasal bundles and
disruption of the ring-like arrangement
of vascular bundles in the stele.
{ECO:0000269|PubMed:15111711}.
SEQUENCE 842 AA; 92438 MW; 6B546D2A87046EAA CRC64;
MEMAVANHRE RSSDSMNRHL DSSGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECS
ILANIEPKQI KVWFQNRRCR DKQRKEASRL QSVNRKLSAM NKLLMEENDR LQKQVSQLVC
ENGYMKQQLT TVVNDPSCES VVTTPQHSLR DANSPAGLLS IAEETLAEFL SKATGTAVDW
VQMPGMKPGP DSVGIFAISQ RCNGVAARAC GLVSLEPMKI AEILKDRPSW FRDCRSLEVF
TMFPAGNGGT IELVYMQTYA PTTLAPARDF WTLRYTTSLD NGSFVVCERS LSGSGAGPNA
ASASQFVRAE MLSSGYLIRP CDGGGSIIHI VDHLNLEAWS VPDVLRPLYE SSKVVAQKMT
ISALRYIRQL AQESNGEVVY GLGRQPAVLR TFSQRLSRGF NDAVNGFGDD GWSTMHCDGA
EDIIVAINST KHLNNISNSL SFLGGVLCAK ASMLLQNVPP AVLIRFLREH RSEWADFNVD
AYSAATLKAG SFAYPGMRPT RFTGSQIIMP LGHTIEHEEM LEVVRLEGHS LAQEDAFMSR
DVHLLQICTG IDENAVGACS ELIFAPINEM FPDDAPLVPS GFRVIPVDAK TGDVQDLLTA
NHRTLDLTSS LEVGPSPENA SGNSFSSSSS RCILTIAFQF PFENNLQENV AGMACQYVRS
VISSVQRVAM AISPSGISPS LGSKLSPGSP EAVTLAQWIS QSYSHHLGSE LLTIDSLGSD
DSVLKLLWDH QDAILCCSLK PQPVFMFANQ AGLDMLETTL VALQDITLEK IFDESGRKAI
CSDFAKLMQQ GFACLPSGIC VSTMGRHVSY EQAVAWKVFA ASEENNNNLH CLAFSFVNWS
FV


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