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Homeotic protein female sterile (Fragile-chorion membrane protein)

 FSH_DROME               Reviewed;        2038 AA.
P13709; A4V442; P13710; Q8IRN6; Q9W3L3;
01-JAN-1990, integrated into UniProtKB/Swiss-Prot.
21-JUN-2005, sequence version 2.
18-JUL-2018, entry version 164.
RecName: Full=Homeotic protein female sterile;
AltName: Full=Fragile-chorion membrane protein;
Name=fs(1)h; Synonyms=fsh; ORFNames=CG2252;
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORMS A AND B), FUNCTION,
AND DEVELOPMENTAL STAGE.
PubMed=2567251; DOI=10.1016/0012-1606(89)90094-8;
Haynes S.R., Mozer B.A., Bhatia-Dey N., Dawid I.B.;
"The Drosophila fsh locus, a maternal effect homeotic gene, encodes
apparent membrane proteins.";
Dev. Biol. 134:246-257(1989).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley;
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G.,
Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A.,
Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X.,
Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[3]
GENOME REANNOTATION, AND ALTERNATIVE SPLICING.
STRAIN=Berkeley;
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D.N.J., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM A).
STRAIN=Berkeley; TISSUE=Embryo;
Stapleton M., Carlson J.W., Chavez C., Frise E., George R.A.,
Pacleb J.M., Park S., Wan K.H., Yu C., Rubin G.M., Celniker S.E.;
Submitted (AUG-2004) to the EMBL/GenBank/DDBJ databases.
[5]
NUCLEOTIDE SEQUENCE [MRNA] OF 308-357 AND 848-897, AND NUCLEOTIDE
SEQUENCE [GENOMIC DNA] OF 1812-1861.
STRAIN=Canton-S; TISSUE=Embryo;
PubMed=3031652; DOI=10.1073/pnas.84.7.1819;
Haynes S.R., Rebbert M.L., Mozer B.A., Forquignon F., Dawid I.B.;
"Pen repeat sequences are GGN clusters and encode a glycine-rich
domain in a Drosophila cDNA homologous to the rat helix destabilizing
protein.";
Proc. Natl. Acad. Sci. U.S.A. 84:1819-1823(1987).
[6]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-452; SER-943; SER-1653;
SER-1980 AND SER-1988, AND IDENTIFICATION BY MASS SPECTROMETRY.
TISSUE=Embryo;
PubMed=18327897; DOI=10.1021/pr700696a;
Zhai B., Villen J., Beausoleil S.A., Mintseris J., Gygi S.P.;
"Phosphoproteome analysis of Drosophila melanogaster embryos.";
J. Proteome Res. 7:1675-1682(2008).
-!- FUNCTION: Required maternally for proper expression of other
homeotic genes involved in pattern formation, such as Ubx.
{ECO:0000269|PubMed:2567251}.
-!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Multi-pass membrane
protein {ECO:0000305}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=B;
IsoId=P13709-1; Sequence=Displayed;
Name=A; Synonyms=C, D, E;
IsoId=P13709-2; Sequence=VSP_014148, VSP_014149;
-!- DEVELOPMENTAL STAGE: Expressed both maternally and zygotically.
{ECO:0000269|PubMed:2567251}.
-----------------------------------------------------------------------
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EMBL; M23221; AAA28540.1; -; mRNA.
EMBL; M23222; AAA28541.1; -; mRNA.
EMBL; AE014298; AAF46312.3; -; Genomic_DNA.
EMBL; AE014298; AAN09226.1; -; Genomic_DNA.
EMBL; AE014298; AAS65277.1; -; Genomic_DNA.
EMBL; AE014298; AAS65278.1; -; Genomic_DNA.
EMBL; AE014298; AAS65279.1; -; Genomic_DNA.
EMBL; BT015270; AAT94499.1; -; mRNA.
EMBL; M15762; AAA70424.1; -; Genomic_DNA.
EMBL; M15763; AAA70423.1; -; mRNA.
EMBL; M15764; AAA70422.1; -; mRNA.
PIR; A43742; A43742.
RefSeq; NP_001162699.1; NM_001169228.2. [P13709-2]
RefSeq; NP_511078.2; NM_078523.3. [P13709-1]
RefSeq; NP_727228.1; NM_167144.4. [P13709-2]
RefSeq; NP_996368.1; NM_206645.4. [P13709-2]
RefSeq; NP_996369.1; NM_206646.4. [P13709-2]
RefSeq; NP_996370.1; NM_206647.3. [P13709-2]
UniGene; Dm.7909; -.
ProteinModelPortal; P13709; -.
SMR; P13709; -.
BioGrid; 58193; 24.
DIP; DIP-19376N; -.
IntAct; P13709; 32.
STRING; 7227.FBpp0305499; -.
iPTMnet; P13709; -.
PaxDb; P13709; -.
PRIDE; P13709; -.
EnsemblMetazoa; FBtr0071118; FBpp0071073; FBgn0004656. [P13709-2]
EnsemblMetazoa; FBtr0071119; FBpp0071074; FBgn0004656. [P13709-1]
EnsemblMetazoa; FBtr0071120; FBpp0089297; FBgn0004656. [P13709-2]
EnsemblMetazoa; FBtr0071121; FBpp0089298; FBgn0004656. [P13709-2]
EnsemblMetazoa; FBtr0071122; FBpp0089299; FBgn0004656. [P13709-2]
EnsemblMetazoa; FBtr0301309; FBpp0290524; FBgn0004656. [P13709-2]
EnsemblMetazoa; FBtr0333309; FBpp0305501; FBgn0004656.
GeneID; 31722; -.
KEGG; dme:Dmel_CG2252; -.
UCSC; CG2252-RC; d. melanogaster.
CTD; 31722; -.
FlyBase; FBgn0004656; fs(1)h.
eggNOG; KOG1474; Eukaryota.
eggNOG; COG5076; LUCA.
GeneTree; ENSGT00920000148952; -.
HOGENOM; HOG000264002; -.
InParanoid; P13709; -.
OMA; DANQTDT; -.
OrthoDB; EOG091G01QC; -.
PhylomeDB; P13709; -.
ChiTaRS; fs(1)h; fly.
GenomeRNAi; 31722; -.
PRO; PR:P13709; -.
Proteomes; UP000000803; Chromosome X.
Bgee; FBgn0004656; -.
ExpressionAtlas; P13709; baseline and differential.
Genevisible; P13709; DM.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0005634; C:nucleus; IDA:FlyBase.
GO; GO:0048813; P:dendrite morphogenesis; IMP:FlyBase.
GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IMP:FlyBase.
GO; GO:0032968; P:positive regulation of transcription elongation from RNA polymerase II promoter; ISS:FlyBase.
GO; GO:0007362; P:terminal region determination; IMP:FlyBase.
Gene3D; 1.20.1270.220; -; 1.
Gene3D; 1.20.920.10; -; 2.
InterPro; IPR031354; BRD4_CDT.
InterPro; IPR001487; Bromodomain.
InterPro; IPR036427; Bromodomain-like_sf.
InterPro; IPR018359; Bromodomain_CS.
InterPro; IPR027353; NET_dom.
InterPro; IPR038336; NET_sf.
Pfam; PF17035; BET; 1.
Pfam; PF17105; BRD4_CDT; 1.
Pfam; PF00439; Bromodomain; 2.
PRINTS; PR00503; BROMODOMAIN.
SMART; SM00297; BROMO; 2.
SUPFAM; SSF47370; SSF47370; 2.
PROSITE; PS00633; BROMODOMAIN_1; 2.
PROSITE; PS50014; BROMODOMAIN_2; 2.
PROSITE; PS51525; NET; 1.
1: Evidence at protein level;
Alternative splicing; Bromodomain; Complete proteome;
Developmental protein; Membrane; Phosphoprotein; Reference proteome;
Repeat; Transmembrane; Transmembrane helix.
CHAIN 1 2038 Homeotic protein female sterile.
/FTId=PRO_0000211194.
TRANSMEM 330 350 Helical. {ECO:0000255}.
TRANSMEM 451 471 Helical. {ECO:0000255}.
TRANSMEM 750 770 Helical. {ECO:0000255}.
TRANSMEM 790 810 Helical. {ECO:0000255}.
TRANSMEM 816 830 Helical. {ECO:0000255}.
TRANSMEM 874 894 Helical. {ECO:0000255}.
TRANSMEM 1731 1751 Helical. {ECO:0000255}.
TRANSMEM 1939 1959 Helical. {ECO:0000255}.
DOMAIN 51 123 Bromo 1. {ECO:0000255|PROSITE-
ProRule:PRU00035}.
DOMAIN 495 567 Bromo 2. {ECO:0000255|PROSITE-
ProRule:PRU00035}.
DOMAIN 942 1024 NET. {ECO:0000255|PROSITE-
ProRule:PRU00857}.
MOD_RES 452 452 Phosphoserine.
{ECO:0000269|PubMed:18327897}.
MOD_RES 943 943 Phosphoserine.
{ECO:0000269|PubMed:18327897}.
MOD_RES 1653 1653 Phosphoserine.
{ECO:0000269|PubMed:18327897}.
MOD_RES 1980 1980 Phosphoserine.
{ECO:0000269|PubMed:18327897}.
MOD_RES 1988 1988 Phosphoserine.
{ECO:0000269|PubMed:18327897}.
VAR_SEQ 1022 1022 H -> RKPYY (in isoform A).
{ECO:0000303|PubMed:2567251,
ECO:0000303|Ref.4}.
/FTId=VSP_014148.
VAR_SEQ 1107 2038 Missing (in isoform A).
{ECO:0000303|PubMed:2567251,
ECO:0000303|Ref.4}.
/FTId=VSP_014149.
CONFLICT 909 909 A -> G (in Ref. 1; AAA28540).
{ECO:0000305}.
CONFLICT 1403 1403 Q -> QQ (in Ref. 1; AAA28540).
{ECO:0000305}.
CONFLICT 1532 1532 Missing (in Ref. 1; AAA28540).
{ECO:0000305}.
SEQUENCE 2038 AA; 205345 MW; DC4A1A7B1266191E CRC64;
MSSSEPPPRY EPPVEPVNGI VQPPVIPPAE RPGRNTNQLQ YLIKTVMKVI WKHHFSWPFQ
QPVDAKKLNL PDYHKIIKQP MDMGTIKKRL ENNYYWSAKE TIQDFNTMFN NCYVYNKPGE
DVVVMAQTLE KVFLQKIESM PKEELELEPV TAKGGKKKQR APATPKSSSG GAGASTGSGT
SSAAVTSGPG SGSTKVSVAA SSAQQSGLQG ATGAGGGSSS TPGTQPGSGA GGAIAARPVS
AMGGTVSSTA GGAPSIPPIS TMPPHTVPGS TNTTTTAMAG GVGGPGAAGA NPNAAALMAS
LLNAGQTGAY PGAPGQTAVN SSSLLDGSTA AVAAAAAAAA AAAAAAGGAA GAAGGAGTIP
AVAVNAANAV QAYVNAGVSV GVDAVIPPQQ PAKIKKGVKR KADTTTPTAN AFESPYTQMD
SKSAKIATRR ESNRQDLTFQ GSGYNMSPLG VSGVPGLGGL VAGGVAGVAV AKNKEKLSDA
LKSCNEILKE LFSKKHSGYA WPFYKPVDAE MLGLHDYHDI IKKPMDLGTV KRKMDNREYK
SAPEFAADVR LIFTNCYKYN PPDHDVVAMG RKLQDVFEMR YANIPDEPVA NAAHHHGHGH
GHGHGHGHGH GHGHGHGHGH GYGGSSSLKH DASDSSSEDS SDTENESNSD EERSARLKML
ESKLLGLQEE IRKLSEEASA KKKAKKKLKE KKKSIGGGSG SGSASHHCHA TGGGANAGGA
GGPGSGGHGS VSVPGGVGSL GPGGAGGANL NALLGGSLVG HGGAAVAGGV PNVGALHSQV
HDVAMAFSQM AGGGAAAGAG FGAGVTAAGA SSGGKAGTLA GALAAGAAAG AGGTTAGSGS
SKGAKSKGGR GAKGSGAGGV GASNNAAAGN AAGGAAGAAA GAGSVGGVGG AGAAGGGNAS
KRAKGSSSAG AGGGVGGANA SAGGAGARGS SKKKPSQVMN FDSEEEDTAK PMSYDEKRQL
SLDINKLPGD KLGRVVHIIQ NREPSLRDSN PDEIEIDFET LKPSTLRELE SYVASCLRKK
THKKPSGKSK DEQMAEKKQE LEKRLQDVTG QLGASKKTAK KDESASSKVE AVQPANPVSS
SSSSSDSSSS SSSDSSSSDS SDSEAGDGDE RPPRKKKSRD SNGSNVNNPS INVVMGGNLP
SGALSPTTML MGLDHVVNSN TPTSQMSNML GNANPLTAAA MLNNNNKTSL PGSNFGGAPA
PGNMMHAGAG VPVAGAAVSA STGQQHNKNG PNDLSKVQPG GPINAALPPH SFAGGTATVA
TSQSSGGIRI ASNLHKPSGL GGGDLGEHHA ALAAALTSGI NSTGTAGGGI NNNGGSNNNA
NPLGGSHGDA MVNASLASLA SGLKQIPQFD DPVEQSLASL EFSAGSTGKS GLTDNFLMQQ
HLMQPAGPQQ QQQQQQQQPF GHQQQQQQQQ QQQQQQQQHM DYVTELLSKG AENVGGMNGN
HLLNFNLDMA AAYQQKHPQQ QQQQAHNNGF NVADFGMAGF DGLNMTAASF LDLEPSLQQQ
QMQQMQLQQQ HHQQQQQQTH QQQQQHQQQH HQQQQQQQLT QQQLQQQQQQ QQQQQHLQQQ
QHQQQHHQAA NKLLIIPKPI ESMMPSPPDK QQLQQHQKVL PPQQSPSDMK LHPNAAAAAA
VASAQAKLVQ TFKANEQNLK NASSWSSLAS ANSPQSHTSS SSSSSKAKPA MDSFQQFRNK
AKERDRLKLL EAAEKEKKNQ KEAAEKEQQR KHHKSSSSSL TSAAVAQAAA IAAATAAAAV
TLGAAAAAAL ASSASNPSGG SSSGGAGSTS QQAITGDRDR DRDRERERER SGSGGGQSGN
GNNSSNSANS NGPGSAGSGG SGGGGGSGPA SAGGPNSGGG GTANSNSGGG GGGGGPALLN
AGSNSNSGVG SGGAASSNSN SSVGGIVGSG GPGSNSQGSS GGGGGGPASG GGMGSGAIDY
GQQVAVLTQV AANAQAQHVA AAVAAQAILA ASPLGAMESG RKSVHDAQPQ ISRVEDIKAS
PGGQGQSSPA QQSPQDRAAA KRAEQRRAEQ ERRRREALAG QIDMNMQSDL MAAFEETL


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