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IGF-II mRNA-binding protein, isoform L (IGF-II mRNA-binding protein, isoform M)

 M9NF14_DROME            Unreviewed;       638 AA.
M9NF14;
26-JUN-2013, integrated into UniProtKB/TrEMBL.
26-JUN-2013, sequence version 1.
20-JUN-2018, entry version 47.
SubName: Full=IGF-II mRNA-binding protein, isoform L {ECO:0000313|EMBL:AFH07330.1};
SubName: Full=IGF-II mRNA-binding protein, isoform M {ECO:0000313|EMBL:AHN59561.1};
Name=Imp {ECO:0000313|EMBL:AFH07330.1,
ECO:0000313|FlyBase:FBgn0285926};
Synonyms=anon-EST:fe2B3 {ECO:0000313|EMBL:AFH07330.1},
anon-WO0140519.39 {ECO:0000313|EMBL:AFH07330.1},
dIMP {ECO:0000313|EMBL:AFH07330.1},
Dmel\CG1691 {ECO:0000313|EMBL:AFH07330.1},
IGF-II {ECO:0000313|EMBL:AFH07330.1},
IGF2BP1 {ECO:0000313|EMBL:AFH07330.1},
IMP {ECO:0000313|EMBL:AFH07330.1}, imp {ECO:0000313|EMBL:AFH07330.1},
IMP-1 {ECO:0000313|EMBL:AFH07330.1},
l(1)G0072 {ECO:0000313|EMBL:AFH07330.1},
MRE11 {ECO:0000313|EMBL:AFH07330.1},
mre11 {ECO:0000313|EMBL:AFH07330.1},
ORE-9 {ECO:0000313|EMBL:AFH07330.1};
ORFNames=CG1691 {ECO:0000313|EMBL:AFH07330.1,
ECO:0000313|FlyBase:FBgn0285926},
Dmel_CG1691 {ECO:0000313|EMBL:AFH07330.1};
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227 {ECO:0000313|EMBL:AFH07330.1, ECO:0000313|Proteomes:UP000000803};
[1] {ECO:0000313|EMBL:AFH07330.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L.,
Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J.,
Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O.,
Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[2] {ECO:0000313|EMBL:AFH07330.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537568;
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
"Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence.";
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002).
[3] {ECO:0000313|EMBL:AFH07330.1, ECO:0000313|Proteomes:UP000000803}
GENOME REANNOTATION.
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[4] {ECO:0000313|EMBL:AFH07330.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537573;
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M.,
Ashburner M., Celniker S.E.;
"The transposable elements of the Drosophila melanogaster euchromatin:
a genomics perspective.";
Genome Biol. 3:RESEARCH0084-RESEARCH0084(2002).
[5] {ECO:0000313|EMBL:AFH07330.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537574;
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
Karpen G.H.;
"Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly.";
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002).
[6] {ECO:0000313|EMBL:AFH07330.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=16110336; DOI=10.1371/journal.pcbi.0010022;
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
Ashburner M., Anxolabehere D.;
"Combined evidence annotation of transposable elements in genome
sequences.";
PLoS Comput. Biol. 1:166-175(2005).
[7] {ECO:0000313|EMBL:AFH07330.1}
NUCLEOTIDE SEQUENCE.
Berkeley Drosophila Genome Project;
Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R.,
Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E.,
Yu C., Rubin G.;
"Drosophila melanogaster release 4 sequence.";
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
[8] {ECO:0000313|EMBL:AFH07330.1}
NUCLEOTIDE SEQUENCE.
Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S.,
Svirskas R., Rubin G.;
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
[9] {ECO:0000313|EMBL:AFH07330.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569856; DOI=10.1126/science.1139815;
Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
"The Release 5.1 annotation of Drosophila melanogaster
heterochromatin.";
Science 316:1586-1591(2007).
[10] {ECO:0000313|EMBL:AFH07330.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569867; DOI=10.1126/science.1139816;
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
Dimitri P., Karpen G.H., Celniker S.E.;
"Sequence finishing and mapping of Drosophila melanogaster
heterochromatin.";
Science 316:1625-1628(2007).
[11] {ECO:0000313|EMBL:AFH07330.1}
NUCLEOTIDE SEQUENCE.
FlyBase;
Submitted (DEC-2016) to the EMBL/GenBank/DDBJ databases.
-----------------------------------------------------------------------
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EMBL; AE014298; AFH07330.1; -; Genomic_DNA.
EMBL; AE014298; AHN59561.1; -; Genomic_DNA.
RefSeq; NP_001245616.1; NM_001258687.3.
RefSeq; NP_001285091.1; NM_001298162.1.
UniGene; Dm.3773; -.
STRING; 7227.FBpp0293680; -.
EnsemblMetazoa; FBtr0305150; FBpp0293680; FBgn0285926.
EnsemblMetazoa; FBtr0346315; FBpp0312047; FBgn0285926.
GeneID; 32009; -.
CTD; 32009; -.
FlyBase; FBgn0285926; Imp.
eggNOG; KOG2193; Eukaryota.
eggNOG; ENOG410ZKB4; LUCA.
GeneTree; ENSGT00530000063171; -.
OrthoDB; EOG091G17T1; -.
GenomeRNAi; 32009; -.
Proteomes; UP000000803; Chromosome X.
Bgee; FBgn0262735; -.
GO; GO:0030424; C:axon; IDA:FlyBase.
GO; GO:0071013; C:catalytic step 2 spliceosome; HDA:FlyBase.
GO; GO:0005737; C:cytoplasm; HDA:FlyBase.
GO; GO:0043025; C:neuronal cell body; IDA:FlyBase.
GO; GO:0071011; C:precatalytic spliceosome; HDA:FlyBase.
GO; GO:0019955; F:cytokine binding; IPI:FlyBase.
GO; GO:0003730; F:mRNA 3'-UTR binding; IDA:FlyBase.
GO; GO:0005975; P:carbohydrate metabolic process; IMP:FlyBase.
GO; GO:0000398; P:mRNA splicing, via spliceosome; IC:FlyBase.
GO; GO:0007399; P:nervous system development; IMP:FlyBase.
GO; GO:0016322; P:neuron remodeling; IMP:FlyBase.
GO; GO:0048680; P:positive regulation of axon regeneration; IMP:FlyBase.
GO; GO:0046427; P:positive regulation of JAK-STAT cascade; IDA:FlyBase.
GO; GO:0042594; P:response to starvation; IMP:FlyBase.
GO; GO:0007283; P:spermatogenesis; IEP:FlyBase.
GO; GO:0051124; P:synaptic growth at neuromuscular junction; IMP:FlyBase.
Gene3D; 3.30.1370.10; -; 2.
Gene3D; 3.30.70.330; -; 1.
InterPro; IPR004087; KH_dom.
InterPro; IPR004088; KH_dom_type_1.
InterPro; IPR036612; KH_dom_type_1_sf.
InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
InterPro; IPR035979; RBD_domain_sf.
InterPro; IPR000504; RRM_dom.
Pfam; PF00013; KH_1; 4.
Pfam; PF00076; RRM_1; 1.
SMART; SM00322; KH; 4.
SMART; SM00360; RRM; 1.
SUPFAM; SSF54791; SSF54791; 4.
SUPFAM; SSF54928; SSF54928; 1.
PROSITE; PS50102; RRM; 1.
1: Evidence at protein level;
Coiled coil {ECO:0000256|SAM:Coils};
Complete proteome {ECO:0000313|Proteomes:UP000000803};
Proteomics identification {ECO:0000213|PeptideAtlas:M9NF14};
Reference proteome {ECO:0000313|Proteomes:UP000000803};
RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176}.
DOMAIN 42 118 RRM. {ECO:0000259|PROSITE:PS50102}.
COILED 282 302 {ECO:0000256|SAM:Coils}.
SEQUENCE 638 AA; 69912 MW; 6318E050D1F91C17 CRC64;
MASELDQFAD LELSKEDREQ IFDPPLDRQQ LEGAGTSSVT TSKILISGIP MQTRFEDIEP
LLKPYGIVKQ CEAISSKDQN TQTVHITFEN PEQAQRAAVG LNGVEFEGSK LHAEQLDKNQ
RRSQRNQRNP YPGMPGPGRQ ADFPLRILVQ SEMVGAIIGR QGSTIRTITQ QSRARVDVHR
KENVGSLEKS ITIYGNPENC TNACKRILEV MQQEAISTNK GELSPECSEI CLKILAHNNL
IGRIIGKSGN TIKRIMQDTD TKITVSSIND INSFNLERII TVKGLIENMS RAENQISTKL
RQSYENDLQA MAPQSLMFPG LHPMAMMSTP GNGMVFNTSM PFPSCQSFAM SKTPASVVPP
VFPNDLQETT YLYIPNNAVG AIIGTRGSHI RSIMRFSNAS LKIAPLDADK PLDQQTERKV
TIVGTPEGQW KAQYMIFEKM REEGFMCGTD DVRLTVELLV ASSQVGRIIG KGGQNVRELQ
RVTGSVIKLP EHALAPPSGG DEETPVHIIG LFYSVQSAQR RIRAMMLSTN PPPITKKQKA
AKEQLQQQQQ SLAGAASSGS QQQQPQSPSQ QQALPPQLHH QPVSSASSSS TPPAHHQQQA
STAATSHQLQ QQQPSPPPPG NATAAAAQQQ QQLASSQQ


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