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Inactive tyrosine-protein kinase 7 (Protein chuzhoi) (Protein-tyrosine kinase 7) (Pseudo tyrosine kinase receptor 7) (Tyrosine-protein kinase-like 7)

 PTK7_MOUSE              Reviewed;        1062 AA.
Q8BKG3; Q3V422; Q6W8S9; Q8CHK5; Q8K178;
28-NOV-2006, integrated into UniProtKB/Swiss-Prot.
01-MAR-2003, sequence version 1.
05-DEC-2018, entry version 144.
RecName: Full=Inactive tyrosine-protein kinase 7;
AltName: Full=Protein chuzhoi;
AltName: Full=Protein-tyrosine kinase 7;
AltName: Full=Pseudo tyrosine kinase receptor 7;
AltName: Full=Tyrosine-protein kinase-like 7;
Flags: Precursor;
Name=Ptk7;
Mus musculus (Mouse).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
NCBI_TaxID=10090;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA], AND TISSUE SPECIFICITY.
STRAIN=BALB/cJ, and C57BL/6J; TISSUE=Liver;
PubMed=15019986; DOI=10.1016/j.gene.2003.12.006;
Jung J.-W., Shin W.S., Song J., Lee S.-T.;
"Cloning and characterization of the full-length mouse Ptk7 cDNA
encoding a defective receptor protein tyrosine kinase.";
Gene 328:75-84(2004).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=C57BL/6J; TISSUE=Head, and Lung;
PubMed=16141072; DOI=10.1126/science.1112014;
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N.,
Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K.,
Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M.,
Davis M.J., Wilming L.G., Aidinis V., Allen J.E.,
Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L.,
Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M.,
Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R.,
Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G.,
di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G.,
Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M.,
Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E.,
Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N.,
Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T.,
Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H.,
Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K.,
Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J.,
Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L.,
Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K.,
Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P.,
Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O.,
Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G.,
Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M.,
Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C.,
Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y.,
Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B.,
Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K.,
Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A.,
Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K.,
Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C.,
Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J.,
Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y.,
Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T.,
Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N.,
Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N.,
Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S.,
Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J.,
Hayashizaki Y.;
"The transcriptional landscape of the mammalian genome.";
Science 309:1559-1563(2005).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=C57BL/6J, and FVB/N; TISSUE=Brain, and Mammary tumor;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[4]
NUCLEOTIDE SEQUENCE [MRNA] OF 774-1062.
STRAIN=W/Wv;
Daigo Y., Takayama I., Fujino M.A.;
"Isolation and characterization of novel human and mouse genes, which
are expressed in the digestive tract.";
Submitted (FEB-2001) to the EMBL/GenBank/DDBJ databases.
[5]
FUNCTION, AND DISRUPTION PHENOTYPE.
PubMed=15229603; DOI=10.1038/nature02677;
Lu X., Borchers A.G.M., Jolicoeur C., Rayburn H., Baker J.C.,
Tessier-Lavigne M.;
"PTK7/CCK-4 is a novel regulator of planar cell polarity in
vertebrates.";
Nature 430:93-98(2004).
[6]
GLYCOSYLATION [LARGE SCALE ANALYSIS] AT ASN-108 AND ASN-397.
TISSUE=Myoblast;
PubMed=19656770; DOI=10.1074/mcp.M900195-MCP200;
Gundry R.L., Raginski K., Tarasova Y., Tchernyshyov I.,
Bausch-Fluck D., Elliott S.T., Boheler K.R., Van Eyk J.E.,
Wollscheid B.;
"The mouse C2C12 myoblast cell surface N-linked glycoproteome:
identification, glycosite occupancy, and membrane orientation.";
Mol. Cell. Proteomics 8:2555-2569(2009).
[7]
GLYCOSYLATION [LARGE SCALE ANALYSIS] AT ASN-98; ASN-275; ASN-397 AND
ASN-559.
PubMed=19349973; DOI=10.1038/nbt.1532;
Wollscheid B., Bausch-Fluck D., Henderson C., O'Brien R., Bibel M.,
Schiess R., Aebersold R., Watts J.D.;
"Mass-spectrometric identification and relative quantification of N-
linked cell surface glycoproteins.";
Nat. Biotechnol. 27:378-386(2009).
[8]
FUNCTION, AND DISRUPTION PHENOTYPE.
PubMed=19439496; DOI=10.1242/dev.030601;
Yen W.W., Williams M., Periasamy A., Conaway M., Burdsal C.,
Keller R., Lu X., Sutherland A.;
"PTK7 is essential for polarized cell motility and convergent
extension during mouse gastrulation.";
Development 136:2039-2048(2009).
[9]
FUNCTION, AND DISRUPTION PHENOTYPE.
PubMed=20704721; DOI=10.1186/1471-213X-10-87;
Paudyal A., Damrau C., Patterson V.L., Ermakov A., Formstone C.,
Lalanne Z., Wells S., Lu X., Norris D.P., Dean C.H., Henderson D.J.,
Murdoch J.N.;
"The novel mouse mutant, chuzhoi, has disruption of Ptk7 protein and
exhibits defects in neural tube, heart and lung development and
abnormal planar cell polarity in the ear.";
BMC Dev. Biol. 10:87-87(2010).
[10]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1056, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Brain, Heart, Kidney, Lung, Spleen, and Testis;
PubMed=21183079; DOI=10.1016/j.cell.2010.12.001;
Huttlin E.L., Jedrychowski M.P., Elias J.E., Goswami T., Rad R.,
Beausoleil S.A., Villen J., Haas W., Sowa M.E., Gygi S.P.;
"A tissue-specific atlas of mouse protein phosphorylation and
expression.";
Cell 143:1174-1189(2010).
-!- FUNCTION: Inactive tyrosine kinase involved in Wnt signaling
pathway. Component of both the non-canonical (also known as the
Wnt/planar cell polarity signaling) and the canonical Wnt
signaling pathway. Functions in cell adhesion, cell migration,
cell polarity, proliferation, actin cytoskeleton reorganization
and apoptosis. Has a role in embryogenesis, epithelial tissue
organization and angiogenesis. {ECO:0000269|PubMed:15229603,
ECO:0000269|PubMed:19439496, ECO:0000269|PubMed:20704721}.
-!- SUBUNIT: Interacts with CTNNB1. {ECO:0000250}.
-!- SUBCELLULAR LOCATION: Membrane; Single-pass type I membrane
protein. Cell junction {ECO:0000250}. Note=Colocalizes with MMP14
at cell junctions. Also localizes at the leading edge of migrating
cells.
-!- TISSUE SPECIFICITY: Expressed at high levels in lung and un-
pregnant uterus among adult tissues, and in the tail, limbs,
somites, gut and craniofacial regions among embryonic tissues.
{ECO:0000269|PubMed:15019986}.
-!- DOMAIN: The protein kinase domain is predicted to be catalytically
inactive.
-!- PTM: MMP14 cleaves PTK7 between Pro-613 and Leu-614 generating an
N-terminal soluble (70 kDa) fragment and a membrane C-terminal (50
kDa) fragment. Proteolysis by MMP14 regulates PTK7 function in
non-canonical Wnt signaling pathway. {ECO:0000250}.
-!- DISRUPTION PHENOTYPE: Mice die perinatally and display
craniorachischisis, a severe form of neural tube defect in which
the neural tube fails to close from the midbrain hindbrain
boundary to the base of the spine. Chuzhoi mutants also display
disruption of planar cell polarity in the inner ear, and defective
heart and lung development. {ECO:0000269|PubMed:15229603,
ECO:0000269|PubMed:19439496, ECO:0000269|PubMed:20704721}.
-!- SIMILARITY: Belongs to the protein kinase superfamily. Tyr protein
kinase family. Insulin receptor subfamily. {ECO:0000255|PROSITE-
ProRule:PRU00159}.
-!- SEQUENCE CAUTION:
Sequence=AAH27800.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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EMBL; AF531873; AAQ10071.1; -; mRNA.
EMBL; AY303976; AAQ73496.1; -; Genomic_DNA.
EMBL; AK018379; BAE43251.1; -; mRNA.
EMBL; AK053044; BAC35248.1; -; mRNA.
EMBL; AK163135; BAE37208.1; -; mRNA.
EMBL; BC027800; AAH27800.1; ALT_INIT; mRNA.
EMBL; BC076578; AAH76578.1; -; mRNA.
EMBL; AB055408; BAC53806.1; -; mRNA.
CCDS; CCDS37637.1; -.
RefSeq; NP_780377.1; NM_175168.4.
UniGene; Mm.181833; -.
ProteinModelPortal; Q8BKG3; -.
SMR; Q8BKG3; -.
BioGrid; 214723; 1.
IntAct; Q8BKG3; 1.
MINT; Q8BKG3; -.
STRING; 10090.ENSMUSP00000043703; -.
iPTMnet; Q8BKG3; -.
PhosphoSitePlus; Q8BKG3; -.
SwissPalm; Q8BKG3; -.
MaxQB; Q8BKG3; -.
PaxDb; Q8BKG3; -.
PeptideAtlas; Q8BKG3; -.
PRIDE; Q8BKG3; -.
Ensembl; ENSMUST00000044442; ENSMUSP00000043703; ENSMUSG00000023972.
GeneID; 71461; -.
KEGG; mmu:71461; -.
UCSC; uc008cth.2; mouse.
CTD; 5754; -.
MGI; MGI:1918711; Ptk7.
eggNOG; KOG1026; Eukaryota.
eggNOG; KOG4475; Eukaryota.
eggNOG; COG0515; LUCA.
GeneTree; ENSGT00940000157908; -.
HOGENOM; HOG000115767; -.
HOVERGEN; HBG008320; -.
InParanoid; Q8BKG3; -.
KO; K05127; -.
OMA; VLHCQAT; -.
OrthoDB; EOG091G0BWE; -.
PhylomeDB; Q8BKG3; -.
TreeFam; TF326835; -.
PRO; PR:Q8BKG3; -.
Proteomes; UP000000589; Chromosome 17.
Bgee; ENSMUSG00000023972; Expressed in 137 organ(s), highest expression level in camera-type eye.
CleanEx; MM_PTK7; -.
Genevisible; Q8BKG3; MM.
GO; GO:0005911; C:cell-cell junction; IDA:MGI.
GO; GO:0005887; C:integral component of plasma membrane; IEA:InterPro.
GO; GO:0016020; C:membrane; IDA:MGI.
GO; GO:0005886; C:plasma membrane; IDA:MGI.
GO; GO:1904929; F:coreceptor activity involved in Wnt signaling pathway, planar cell polarity pathway; IEA:InterPro.
GO; GO:0031532; P:actin cytoskeleton reorganization; ISO:MGI.
GO; GO:0003401; P:axis elongation; IMP:MGI.
GO; GO:0007155; P:cell adhesion; IEA:UniProtKB-KW.
GO; GO:0016477; P:cell migration; ISO:MGI.
GO; GO:0071300; P:cellular response to retinoic acid; ISO:MGI.
GO; GO:0090103; P:cochlea morphogenesis; IMP:MGI.
GO; GO:0060026; P:convergent extension; IMP:MGI.
GO; GO:0060976; P:coronary vasculature development; IMP:MGI.
GO; GO:0045198; P:establishment of epithelial cell apical/basal polarity; IMP:MGI.
GO; GO:0001736; P:establishment of planar polarity; IMP:MGI.
GO; GO:0007507; P:heart development; IMP:MGI.
GO; GO:0060484; P:lung-associated mesenchyme development; IMP:MGI.
GO; GO:0001843; P:neural tube closure; IMP:MGI.
GO; GO:0018108; P:peptidyl-tyrosine phosphorylation; IEA:GOC.
GO; GO:0090179; P:planar cell polarity pathway involved in neural tube closure; IGI:MGI.
GO; GO:0090263; P:positive regulation of canonical Wnt signaling pathway; ISO:MGI.
GO; GO:0010976; P:positive regulation of neuron projection development; ISO:MGI.
GO; GO:0003281; P:ventricular septum development; IMP:MGI.
GO; GO:0042060; P:wound healing; IGI:MGI.
Gene3D; 2.60.40.10; -; 7.
InterPro; IPR007110; Ig-like_dom.
InterPro; IPR036179; Ig-like_dom_sf.
InterPro; IPR013783; Ig-like_fold.
InterPro; IPR013098; Ig_I-set.
InterPro; IPR003599; Ig_sub.
InterPro; IPR003598; Ig_sub2.
InterPro; IPR013106; Ig_V-set.
InterPro; IPR011009; Kinase-like_dom_sf.
InterPro; IPR000719; Prot_kinase_dom.
InterPro; IPR033592; PTK7.
InterPro; IPR001245; Ser-Thr/Tyr_kinase_cat_dom.
InterPro; IPR008266; Tyr_kinase_AS.
PANTHER; PTHR26391:SF15; PTHR26391:SF15; 3.
Pfam; PF07679; I-set; 2.
Pfam; PF07714; Pkinase_Tyr; 1.
PRINTS; PR00109; TYRKINASE.
SMART; SM00409; IG; 7.
SMART; SM00408; IGc2; 7.
SMART; SM00406; IGv; 2.
SUPFAM; SSF48726; SSF48726; 6.
SUPFAM; SSF56112; SSF56112; 1.
PROSITE; PS50835; IG_LIKE; 7.
PROSITE; PS50011; PROTEIN_KINASE_DOM; 1.
PROSITE; PS00109; PROTEIN_KINASE_TYR; 1.
1: Evidence at protein level;
Cell adhesion; Cell junction; Complete proteome; Disulfide bond;
Glycoprotein; Immunoglobulin domain; Membrane; Phosphoprotein;
Receptor; Reference proteome; Repeat; Signal; Transmembrane;
Transmembrane helix; Wnt signaling pathway.
SIGNAL 1 22 {ECO:0000255}.
CHAIN 23 1062 Inactive tyrosine-protein kinase 7.
/FTId=PRO_0000260435.
TOPO_DOM 23 696 Extracellular. {ECO:0000255}.
TRANSMEM 697 717 Helical. {ECO:0000255}.
TOPO_DOM 718 1062 Cytoplasmic. {ECO:0000255}.
DOMAIN 23 112 Ig-like C2-type 1.
DOMAIN 120 210 Ig-like C2-type 2.
DOMAIN 217 309 Ig-like C2-type 3.
DOMAIN 301 399 Ig-like C2-type 4.
DOMAIN 404 489 Ig-like C2-type 5.
DOMAIN 495 578 Ig-like C2-type 6.
DOMAIN 570 672 Ig-like C2-type 7.
DOMAIN 788 1058 Protein kinase; inactive.
{ECO:0000255|PROSITE-ProRule:PRU00159}.
REGION 786 1062 Interaction with CTNNB1. {ECO:0000250}.
SITE 613 614 Cleavage; by MMP14. {ECO:0000250}.
MOD_RES 1056 1056 Phosphoserine.
{ECO:0000244|PubMed:21183079}.
CARBOHYD 98 98 N-linked (GlcNAc...) asparagine.
{ECO:0000269|PubMed:19349973}.
CARBOHYD 108 108 N-linked (GlcNAc...) asparagine.
{ECO:0000269|PubMed:19656770}.
CARBOHYD 176 176 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 206 206 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 260 260 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 275 275 N-linked (GlcNAc...) asparagine.
{ECO:0000269|PubMed:19349973}.
CARBOHYD 397 397 N-linked (GlcNAc...) asparagine.
{ECO:0000269|PubMed:19349973,
ECO:0000269|PubMed:19656770}.
CARBOHYD 455 455 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 559 559 N-linked (GlcNAc...) asparagine.
{ECO:0000269|PubMed:19349973}.
CARBOHYD 638 638 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
DISULFID 45 93 {ECO:0000255|PROSITE-ProRule:PRU00114}.
DISULFID 142 192 {ECO:0000255|PROSITE-ProRule:PRU00114}.
DISULFID 238 293 {ECO:0000255|PROSITE-ProRule:PRU00114}.
DISULFID 335 383 {ECO:0000255|PROSITE-ProRule:PRU00114}.
DISULFID 425 473 {ECO:0000255|PROSITE-ProRule:PRU00114}.
DISULFID 516 562 {ECO:0000255|PROSITE-ProRule:PRU00114}.
DISULFID 605 656 {ECO:0000255|PROSITE-ProRule:PRU00114}.
CONFLICT 818 818 L -> R (in Ref. 4; BAC53806).
{ECO:0000305}.
SEQUENCE 1062 AA; 117532 MW; 138E25198A21E6A1 CRC64;
MGARPLTLLR ALLLPLLAGA QAAIVFIKEP SSQDALQGRR ALLRCEVEAP DPVHVYWLLN
GVPVQDTERR FAQGSSLSFA AVDRLQDSGA FQCVARDNVT GEEVRSTNAS FNIKWIEAGP
VVLKHPASEA EIQPQTQVTL RCHIDGHPRP TYQWFRDGTP LSDDQSTHTV SSRERNLTLR
PASPEHSGLY SCCAHNAFGQ ACSSQNFTLS VADESFARVV LAPQDVVVAR NEEAMFHCQF
SAQPPPSLQW VFEDETPITN RSRPPHLRRA VVFANGSLLL TQVRPRNAGV YRCIGQGQRG
PPIVLEATLH LAEIEDMLPF EPRVFIAGDE ERVTCPAPQG LPTPSVWWEH AGVPLPAHGR
VHQKGLELVF VTIAESDTGV YTCHASNLAG QRRQDVNITV ATVPTWLRKP QDSQLEEGKP
GYLHCLTQAT PKPTVIWYRN QMLISEDSRF EVSKNGTLRI NSVEVYDGTL YRCVSSTPAG
SIEAQARVQV LEKLKFTPPP QPQQCMEFDK EATVPCSATG REKPTVKWVR ADGSSLPEWV
TDNAGTLHFA RVTRDDAGNY TCIASNEPQG QIRAHVQLTV AVFITFKVEP ERTTVYQGHT
ALLRCEAQGD PKPLIQWKGK DRILDPTKLG PRMHIFQNGS LVIHDVAPED SGSYTCIAGN
SCNIRHTEAP LLVVDKPVME DSEGPGSPPP YKMIQTIGLS VGAAVAYIIA VLGLMFYCKK
RCKAKRLQKQ PEGEEPEMEC LNGGPLQNGQ PSAEIQEEVA LTSLGSGPPA TNKRHSAGDR
MHFPRASLQP ITTLGKSEFG EVFLAKAQGV EEGATETLVL VKSLQSRDEQ QQLDFRREVE
MFGKLNHANV VRLLGLCREA EPHYMVLEYV DLGDLKQFLR ISKNKDEKLK SQPLSTKQKV
ALCSQVALGM EHLSNNRFVH KDLAARNCLI SAQRQVKVSA LGLSKDVYNS EYYHFRQAWV
PLRWMSPEAV LEGDFSTKSD VWAFGVLMWE VFTHGEMPHG GQADDEVLAD LQAGKARLPQ
PEGCPSKLYR LMQRCWAPNP KDRPSFSEIA STLGDSPADS KQ


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E0039h ELISA kit CD135,Fetal liver kinase-2,FL cytokine receptor,FLK2,FLK-2,FLT3,FLT-3,Fms-like tyrosine kinase 3,Homo sapiens,Human,Receptor-type tyrosine-protein kinase FLT3,Stem cell tyrosine kinase 1,ST 96T
U0039h CLIA CD135,Fetal liver kinase-2,FL cytokine receptor,FLK2,FLK-2,FLT3,FLT-3,Fms-like tyrosine kinase 3,Homo sapiens,Human,Receptor-type tyrosine-protein kinase FLT3,Stem cell tyrosine kinase 1,STK1,STK 96T
E0039h ELISA CD135,Fetal liver kinase-2,FL cytokine receptor,FLK2,FLK-2,FLT3,FLT-3,Fms-like tyrosine kinase 3,Homo sapiens,Human,Receptor-type tyrosine-protein kinase FLT3,Stem cell tyrosine kinase 1,STK1,ST 96T
10-782-55014 Cytoplasmic tyrosine-protein kinase BMX - EC 2.7.10.2; Bone marrow tyrosine kinase gene in chromosome X protein; Epithelial and endothelial tyrosine kinase; ETK; NTK38 N_A 0.02 mg


 

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