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Inhibitor of vertebrate lysozyme

 IVY_ECOLI               Reviewed;         157 AA.
P0AD59; P45502; P77185;
06-DEC-2005, integrated into UniProtKB/Swiss-Prot.
06-DEC-2005, sequence version 1.
28-MAR-2018, entry version 89.
RecName: Full=Inhibitor of vertebrate lysozyme;
Flags: Precursor;
Name=ivy; Synonyms=ykfE; OrderedLocusNames=b0220, JW0210;
Escherichia coli (strain K12).
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
Enterobacteriaceae; Escherichia.
NCBI_TaxID=83333;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
Takemoto K., Mori H., Murayama N., Kataoka K., Yano M., Itoh T.,
Yamamoto Y., Inokuchi H., Miki T., Hatada E., Fukuda R., Ichihara S.,
Mizuno T., Makino K., Nakata A., Yura T., Sampei G., Mizobuchi K.;
"Systematic sequencing of the Escherichia coli genome: analysis of the
4.0 - 6.0 min (189,987 - 281,416bp) region.";
Submitted (FEB-1996) to the EMBL/GenBank/DDBJ databases.
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=K12 / MG1655 / ATCC 47076;
Chung E., Allen E., Araujo R., Aparicio A.M., Davis K., Duncan M.,
Federspiel N., Hyman R., Kalman S., Komp C., Kurdi O., Lew H., Lin D.,
Namath A., Oefner P., Roberts D., Schramm S., Davis R.W.;
"Sequence of minutes 4-25 of Escherichia coli.";
Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=K12 / MG1655 / ATCC 47076;
PubMed=9278503; DOI=10.1126/science.277.5331.1453;
Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J.,
Mau B., Shao Y.;
"The complete genome sequence of Escherichia coli K-12.";
Science 277:1453-1462(1997).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
PubMed=16738553; DOI=10.1038/msb4100049;
Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
"Highly accurate genome sequences of Escherichia coli K-12 strains
MG1655 and W3110.";
Mol. Syst. Biol. 2:E1-E5(2006).
[5]
PROTEIN SEQUENCE OF 29-39.
STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
Pasquali C., Sanchez J.-C., Ravier F., Golaz O., Hughes G.J.,
Frutiger S., Paquet N., Wilkins M., Appel R.D., Bairoch A.,
Hochstrasser D.F.;
Submitted (AUG-1995) to UniProtKB.
[6]
PROTEIN SEQUENCE OF 29-38.
STRAIN=K12;
PubMed=9868784; DOI=10.1111/j.1574-6968.1998.tb13343.x;
Wasinger V.C., Humphery-Smith I.;
"Small genes/gene-products in Escherichia coli K-12.";
FEMS Microbiol. Lett. 169:375-382(1998).
[7]
CHARACTERIZATION.
STRAIN=K12 / XL1-Blue;
PubMed=11278658; DOI=10.1074/jbc.M010297200;
Montchois V., Abergel C., Sturgis J., Jeudy S., Claverie J.-M.;
"Escherichia coli ykfE ORFan gene encodes a potent inhibitor of C-type
lysozyme.";
J. Biol. Chem. 276:18437-18441(2001).
[8]
CRYSTALLIZATION.
PubMed=11092949; DOI=10.1107/S0907444900015316;
Abergel C., Monchois V., Chenivesse S., Jeudy S., Claverie J.-M.;
"Crystallization and preliminary crystallographic study of b0220, an
'ORFan' protein of unknown function from Escherichia coli.";
Acta Crystallogr. D 56:1694-1695(2000).
[9]
X-RAY CRYSTALLOGRAPHY (1.6 ANGSTROMS).
Abergel C., Monchois V., Claverie J.-M.;
"Structure and evolution of a paradoxical protein family of vertebrate
lysozyme inhibitors only found in Gram-negative bacteria.";
Submitted (NOV-2001) to the PDB data bank.
-!- FUNCTION: Strong inhibitor of lysozyme C.
-!- SUBUNIT: Homodimer.
-!- SUBCELLULAR LOCATION: Periplasm.
-!- SIMILARITY: Belongs to the ivy family. {ECO:0000305}.
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EMBL; U70214; AAB08642.1; -; Genomic_DNA.
EMBL; U00096; AAC73324.1; -; Genomic_DNA.
EMBL; AP009048; BAA77890.1; -; Genomic_DNA.
PIR; E64746; E64746.
RefSeq; NP_414755.1; NC_000913.3.
RefSeq; WP_000532698.1; NZ_LN832404.1.
PDB; 1GPQ; X-ray; 1.60 A; A/B=29-156.
PDB; 1XS0; X-ray; 1.58 A; A/B/C=29-156.
PDBsum; 1GPQ; -.
PDBsum; 1XS0; -.
ProteinModelPortal; P0AD59; -.
SMR; P0AD59; -.
BioGrid; 4261212; 10.
DIP; DIP-10051N; -.
IntAct; P0AD59; 1.
STRING; 316385.ECDH10B_0202; -.
SWISS-2DPAGE; P0AD59; -.
PaxDb; P0AD59; -.
PRIDE; P0AD59; -.
EnsemblBacteria; AAC73324; AAC73324; b0220.
EnsemblBacteria; BAA77890; BAA77890; BAA77890.
GeneID; 946530; -.
KEGG; ecj:JW0210; -.
KEGG; eco:b0220; -.
PATRIC; fig|1411691.4.peg.2063; -.
EchoBASE; EB3317; -.
EcoGene; EG13547; ivy.
eggNOG; ENOG4108WN0; Bacteria.
eggNOG; ENOG4111K9M; LUCA.
HOGENOM; HOG000117011; -.
InParanoid; P0AD59; -.
OMA; DCAAQNI; -.
BioCyc; EcoCyc:G6104-MONOMER; -.
EvolutionaryTrace; P0AD59; -.
PRO; PR:P0AD59; -.
Proteomes; UP000000318; Chromosome.
Proteomes; UP000000625; Chromosome.
GO; GO:0030288; C:outer membrane-bounded periplasmic space; IDA:EcoCyc.
GO; GO:0060241; F:lysozyme inhibitor activity; IDA:EcoCyc.
GO; GO:0061077; P:chaperone-mediated protein folding; IDA:EcoCyc.
GO; GO:0050790; P:regulation of catalytic activity; IDA:EcoCyc.
Gene3D; 3.40.1420.10; -; 1.
InterPro; IPR036501; Ihibitor_vert_lysozyme_sf.
InterPro; IPR014453; Ihibitor_vertebrate_lysozyme.
PIRSF; PIRSF009103; Ivy; 1.
SUPFAM; SSF89872; SSF89872; 1.
1: Evidence at protein level;
3D-structure; Complete proteome; Direct protein sequencing;
Disulfide bond; Periplasm; Reference proteome; Signal.
SIGNAL 1 28 {ECO:0000269|PubMed:9868784,
ECO:0000269|Ref.5}.
CHAIN 29 157 Inhibitor of vertebrate lysozyme.
/FTId=PRO_0000016546.
SITE 88 88 Important for lysozyme inhibition.
DISULFID 85 90
CONFLICT 36 36 Missing (in Ref. 6; AA sequence).
{ECO:0000305}.
HELIX 34 39 {ECO:0000244|PDB:1XS0}.
TURN 41 43 {ECO:0000244|PDB:1XS0}.
HELIX 44 51 {ECO:0000244|PDB:1XS0}.
HELIX 59 62 {ECO:0000244|PDB:1XS0}.
STRAND 65 75 {ECO:0000244|PDB:1XS0}.
STRAND 77 85 {ECO:0000244|PDB:1XS0}.
TURN 90 92 {ECO:0000244|PDB:1XS0}.
STRAND 93 99 {ECO:0000244|PDB:1XS0}.
TURN 101 103 {ECO:0000244|PDB:1XS0}.
STRAND 106 113 {ECO:0000244|PDB:1XS0}.
TURN 115 117 {ECO:0000244|PDB:1XS0}.
STRAND 120 125 {ECO:0000244|PDB:1XS0}.
HELIX 129 131 {ECO:0000244|PDB:1GPQ}.
HELIX 133 144 {ECO:0000244|PDB:1XS0}.
HELIX 146 149 {ECO:0000244|PDB:1XS0}.
SEQUENCE 157 AA; 16872 MW; 9156C5944DFE6D84 CRC64;
MGRISSGGMM FKAITTVAAL VIATSAMAQD DLTISSLAKG ETTKAAFNQM VQGHKLPAWV
MKGGTYTPAQ TVTLGDETYQ VMSACKPHDC GSQRIAVMWS EKSNQMTGLF STIDEKTSQE
KLTWLNVNDA LSIDGKTVLF AALTGSLENH PDGFNFK


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