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Integrin beta

 F1N8N7_CHICK            Unreviewed;       803 AA.
F1N8N7;
03-MAY-2011, integrated into UniProtKB/TrEMBL.
03-MAY-2011, sequence version 1.
31-JAN-2018, entry version 63.
RecName: Full=Integrin beta {ECO:0000256|RuleBase:RU000633};
Name=ITGB1 {ECO:0000313|Ensembl:ENSGALP00000011559};
Gallus gallus (Chicken).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
Phasianidae; Phasianinae; Gallus.
NCBI_TaxID=9031 {ECO:0000313|Ensembl:ENSGALP00000011559, ECO:0000313|Proteomes:UP000000539};
[1] {ECO:0000313|Ensembl:ENSGALP00000011559, ECO:0000313|Proteomes:UP000000539}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Red jungle fowl {ECO:0000313|Ensembl:ENSGALP00000011559,
ECO:0000313|Proteomes:UP000000539};
PubMed=15592404; DOI=10.1038/nature03154;
International Chicken Genome Sequencing Consortium;
Hillier L.W., Miller W., Birney E., Warren W., Hardison R.C.,
Ponting C.P., Bork P., Burt D.W., Groenen M.A.M., Delany M.E.,
Dodgson J.B., Chinwalla A.T., Cliften P.F., Clifton S.W.,
Delehaunty K.D., Fronick C., Fulton R.S., Graves T.A., Kremitzki C.,
Layman D., Magrini V., McPherson J.D., Miner T.L., Minx P., Nash W.E.,
Nhan M.N., Nelson J.O., Oddy L.G., Pohl C.S., Randall-Maher J.,
Smith S.M., Wallis J.W., Yang S.-P., Romanov M.N., Rondelli C.M.,
Paton B., Smith J., Morrice D., Daniels L., Tempest H.G.,
Robertson L., Masabanda J.S., Griffin D.K., Vignal A., Fillon V.,
Jacobbson L., Kerje S., Andersson L., Crooijmans R.P., Aerts J.,
van der Poel J.J., Ellegren H., Caldwell R.B., Hubbard S.J.,
Grafham D.V., Kierzek A.M., McLaren S.R., Overton I.M., Arakawa H.,
Beattie K.J., Bezzubov Y., Boardman P.E., Bonfield J.K.,
Croning M.D.R., Davies R.M., Francis M.D., Humphray S.J., Scott C.E.,
Taylor R.G., Tickle C., Brown W.R.A., Rogers J., Buerstedde J.-M.,
Wilson S.A., Stubbs L., Ovcharenko I., Gordon L., Lucas S.,
Miller M.M., Inoko H., Shiina T., Kaufman J., Salomonsen J.,
Skjoedt K., Wong G.K.-S., Wang J., Liu B., Wang J., Yu J., Yang H.,
Nefedov M., Koriabine M., Dejong P.J., Goodstadt L., Webber C.,
Dickens N.J., Letunic I., Suyama M., Torrents D., von Mering C.,
Zdobnov E.M., Makova K., Nekrutenko A., Elnitski L., Eswara P.,
King D.C., Yang S.-P., Tyekucheva S., Radakrishnan A., Harris R.S.,
Chiaromonte F., Taylor J., He J., Rijnkels M., Griffiths-Jones S.,
Ureta-Vidal A., Hoffman M.M., Severin J., Searle S.M.J., Law A.S.,
Speed D., Waddington D., Cheng Z., Tuzun E., Eichler E., Bao Z.,
Flicek P., Shteynberg D.D., Brent M.R., Bye J.M., Huckle E.J.,
Chatterji S., Dewey C., Pachter L., Kouranov A., Mourelatos Z.,
Hatzigeorgiou A.G., Paterson A.H., Ivarie R., Brandstrom M.,
Axelsson E., Backstrom N., Berlin S., Webster M.T., Pourquie O.,
Reymond A., Ucla C., Antonarakis S.E., Long M., Emerson J.J.,
Betran E., Dupanloup I., Kaessmann H., Hinrichs A.S., Bejerano G.,
Furey T.S., Harte R.A., Raney B., Siepel A., Kent W.J., Haussler D.,
Eyras E., Castelo R., Abril J.F., Castellano S., Camara F., Parra G.,
Guigo R., Bourque G., Tesler G., Pevzner P.A., Smit A., Fulton L.A.,
Mardis E.R., Wilson R.K.;
"Sequence and comparative analysis of the chicken genome provide
unique perspectives on vertebrate evolution.";
Nature 432:695-716(2004).
[2] {ECO:0000313|Ensembl:ENSGALP00000011559}
IDENTIFICATION.
STRAIN=Red jungle fowl {ECO:0000313|Ensembl:ENSGALP00000011559};
Ensembl;
Submitted (JUL-2011) to UniProtKB.
-!- SUBCELLULAR LOCATION: Membrane {ECO:0000256|RuleBase:RU000633};
Single-pass type I membrane protein
{ECO:0000256|RuleBase:RU000633}.
-!- SIMILARITY: Belongs to the integrin beta chain family.
{ECO:0000256|RuleBase:RU000633}.
-!- CAUTION: The sequence shown here is derived from an Ensembl
automatic analysis pipeline and should be considered as
preliminary data. {ECO:0000313|Ensembl:ENSGALP00000011559}.
-----------------------------------------------------------------------
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms
Distributed under the Creative Commons Attribution-NoDerivs License
-----------------------------------------------------------------------
EMBL; AADN04000098; -; NOT_ANNOTATED_CDS; Genomic_DNA.
RefSeq; NP_001034343.2; NM_001039254.2.
UniGene; Gga.111; -.
PRIDE; F1N8N7; -.
Ensembl; ENSGALT00000011573; ENSGALP00000011559; ENSGALG00000007145.
GeneID; 374058; -.
CTD; 3688; -.
eggNOG; KOG1226; Eukaryota.
eggNOG; ENOG410XP60; LUCA.
GeneTree; ENSGT00760000119064; -.
OMA; FFDEDDC; -.
OrthoDB; EOG091G029W; -.
PhylomeDB; F1N8N7; -.
TreeFam; TF105392; -.
Reactome; R-GGA-1566948; Elastic fibre formation.
Reactome; R-GGA-1566977; Fibronectin matrix formation.
Reactome; R-GGA-198933; Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell.
Reactome; R-GGA-202733; Cell surface interactions at the vascular wall.
Reactome; R-GGA-210991; Basigin interactions.
Reactome; R-GGA-2129379; Molecules associated with elastic fibres.
Reactome; R-GGA-216083; Integrin cell surface interactions.
Reactome; R-GGA-3000157; Laminin interactions.
Reactome; R-GGA-3000170; Syndecan interactions.
Reactome; R-GGA-3000178; ECM proteoglycans.
Reactome; R-GGA-446343; Localization of the PINCH-ILK-PARVIN complex to focal adhesions.
Reactome; R-GGA-8874081; MET activates PTK2 signaling.
Reactome; R-GGA-8875513; MET interacts with TNS proteins.
Proteomes; UP000000539; Chromosome 2.
Bgee; ENSGALG00000007145; -.
GO; GO:0005623; C:cell; IDA:AgBase.
GO; GO:0031410; C:cytoplasmic vesicle; IEA:Ensembl.
GO; GO:0043197; C:dendritic spine; IEA:Ensembl.
GO; GO:0009897; C:external side of plasma membrane; IEA:Ensembl.
GO; GO:0070062; C:extracellular exosome; IEA:Ensembl.
GO; GO:0030175; C:filopodium; IEA:Ensembl.
GO; GO:0005925; C:focal adhesion; IDA:AgBase.
GO; GO:0034665; C:integrin alpha1-beta1 complex; IEA:Ensembl.
GO; GO:0034680; C:integrin alpha10-beta1 complex; IEA:Ensembl.
GO; GO:0034681; C:integrin alpha11-beta1 complex; IEA:Ensembl.
GO; GO:0034666; C:integrin alpha2-beta1 complex; IEA:Ensembl.
GO; GO:0034667; C:integrin alpha3-beta1 complex; IEA:Ensembl.
GO; GO:0034677; C:integrin alpha7-beta1 complex; IEA:Ensembl.
GO; GO:0014704; C:intercalated disc; IEA:Ensembl.
GO; GO:0071438; C:invadopodium membrane; IEA:Ensembl.
GO; GO:0045121; C:membrane raft; IEA:Ensembl.
GO; GO:0035748; C:myelin sheath abaxonal region; IEA:Ensembl.
GO; GO:0031594; C:neuromuscular junction; IEA:Ensembl.
GO; GO:0048471; C:perinuclear region of cytoplasm; IEA:Ensembl.
GO; GO:0032587; C:ruffle membrane; IEA:Ensembl.
GO; GO:0042383; C:sarcolemma; IEA:Ensembl.
GO; GO:0097060; C:synaptic membrane; IEA:Ensembl.
GO; GO:0003779; F:actin binding; IEA:Ensembl.
GO; GO:0019960; F:C-X3-C chemokine binding; IEA:Ensembl.
GO; GO:0045296; F:cadherin binding; IEA:Ensembl.
GO; GO:0098639; F:collagen binding involved in cell-matrix adhesion; IEA:Ensembl.
GO; GO:0001968; F:fibronectin binding; IEA:Ensembl.
GO; GO:0005178; F:integrin binding; IEA:Ensembl.
GO; GO:0043236; F:laminin binding; IEA:Ensembl.
GO; GO:0002020; F:protease binding; IEA:Ensembl.
GO; GO:0046982; F:protein heterodimerization activity; IEA:Ensembl.
GO; GO:1990782; F:protein tyrosine kinase binding; IPI:AgBase.
GO; GO:0004872; F:receptor activity; IEA:InterPro.
GO; GO:0048675; P:axon extension; IEA:Ensembl.
GO; GO:0071711; P:basement membrane organization; IEA:Ensembl.
GO; GO:0007161; P:calcium-independent cell-matrix adhesion; IEA:Ensembl.
GO; GO:0055007; P:cardiac muscle cell differentiation; IEA:Ensembl.
GO; GO:0001708; P:cell fate specification; IEA:Ensembl.
GO; GO:0002042; P:cell migration involved in sprouting angiogenesis; IEA:Ensembl.
GO; GO:0033631; P:cell-cell adhesion mediated by integrin; IEA:Ensembl.
GO; GO:0071404; P:cellular response to low-density lipoprotein particle stimulus; IEA:Ensembl.
GO; GO:0048813; P:dendrite morphogenesis; IEA:Ensembl.
GO; GO:0021943; P:formation of radial glial scaffolds; IEA:Ensembl.
GO; GO:0000082; P:G1/S transition of mitotic cell cycle; IEA:Ensembl.
GO; GO:0008354; P:germ cell migration; IEA:Ensembl.
GO; GO:0034113; P:heterotypic cell-cell adhesion; IEA:Ensembl.
GO; GO:0007229; P:integrin-mediated signaling pathway; IEA:UniProtKB-KW.
GO; GO:0050901; P:leukocyte tethering or rolling; IEA:Ensembl.
GO; GO:0048333; P:mesodermal cell differentiation; IEA:Ensembl.
GO; GO:2000811; P:negative regulation of anoikis; IEA:Ensembl.
GO; GO:0045596; P:negative regulation of cell differentiation; IEA:Ensembl.
GO; GO:0035024; P:negative regulation of Rho protein signal transduction; IEA:Ensembl.
GO; GO:0045766; P:positive regulation of angiogenesis; IEA:Ensembl.
GO; GO:0043065; P:positive regulation of apoptotic process; IEA:Ensembl.
GO; GO:0008284; P:positive regulation of cell proliferation; IEA:Ensembl.
GO; GO:0043547; P:positive regulation of GTPase activity; IEA:Ensembl.
GO; GO:0051897; P:positive regulation of protein kinase B signaling; IEA:Ensembl.
GO; GO:1903078; P:positive regulation of protein localization to plasma membrane; IEA:Ensembl.
GO; GO:2000273; P:positive regulation of receptor activity; IEA:Ensembl.
GO; GO:0031623; P:receptor internalization; IEA:Ensembl.
GO; GO:0051726; P:regulation of cell cycle; IEA:Ensembl.
GO; GO:0010710; P:regulation of collagen catabolic process; IEA:Ensembl.
GO; GO:0045214; P:sarcomere organization; IEA:Ensembl.
GO; GO:0008542; P:visual learning; IEA:Ensembl.
Gene3D; 1.20.5.100; -; 1.
Gene3D; 1.20.5.630; -; 1.
InterPro; IPR021157; Cyt_c1_TM_anchor_C.
InterPro; IPR013111; EGF_extracell.
InterPro; IPR027071; Integrin_beta-1.
InterPro; IPR033760; Integrin_beta_N.
InterPro; IPR015812; Integrin_bsu.
InterPro; IPR014836; Integrin_bsu_cyt_dom.
InterPro; IPR037076; Integrin_bsu_cyt_dom_sf.
InterPro; IPR012896; Integrin_bsu_tail.
InterPro; IPR036349; Integrin_bsu_tail_dom_sf.
InterPro; IPR002369; Integrin_bsu_VWA.
InterPro; IPR032695; Integrin_dom_sf.
InterPro; IPR016201; PSI.
InterPro; IPR036465; vWFA_dom_sf.
PANTHER; PTHR10082; PTHR10082; 1.
PANTHER; PTHR10082:SF28; PTHR10082:SF28; 1.
Pfam; PF07974; EGF_2; 1.
Pfam; PF08725; Integrin_b_cyt; 1.
Pfam; PF07965; Integrin_B_tail; 1.
Pfam; PF00362; Integrin_beta; 1.
Pfam; PF17205; PSI_integrin; 1.
PIRSF; PIRSF002512; Integrin_B; 1.
PRINTS; PR01186; INTEGRINB.
SMART; SM00187; INB; 1.
SMART; SM01241; Integrin_b_cyt; 1.
SMART; SM01242; Integrin_B_tail; 1.
SMART; SM00423; PSI; 1.
SUPFAM; SSF53300; SSF53300; 1.
SUPFAM; SSF69179; SSF69179; 1.
SUPFAM; SSF69687; SSF69687; 1.
PROSITE; PS00243; INTEGRIN_BETA; 1.
3: Inferred from homology;
Cell adhesion {ECO:0000256|RuleBase:RU000633};
Complete proteome {ECO:0000313|Proteomes:UP000000539};
Disulfide bond {ECO:0000256|PIRSR:PIRSR002512-1};
Integrin {ECO:0000256|RuleBase:RU000633,
ECO:0000256|SAAS:SAAS00895071};
Membrane {ECO:0000256|SAAS:SAAS00895947, ECO:0000256|SAM:Phobius};
Reference proteome {ECO:0000313|Proteomes:UP000000539};
Signal {ECO:0000256|SAM:SignalP};
Transmembrane {ECO:0000256|SAAS:SAAS00895947,
ECO:0000256|SAM:Phobius};
Transmembrane helix {ECO:0000256|SAAS:SAAS00895947,
ECO:0000256|SAM:Phobius}.
SIGNAL 1 24 {ECO:0000256|SAM:SignalP}.
CHAIN 25 803 Integrin beta. {ECO:0000256|SAM:SignalP}.
/FTId=PRO_5003270127.
TRANSMEM 734 756 Helical. {ECO:0000256|SAM:Phobius}.
DOMAIN 30 80 PSI. {ECO:0000259|SMART:SM00423}.
DOMAIN 38 469 INB. {ECO:0000259|SMART:SM00187}.
DOMAIN 645 733 Integrin_B_tail.
{ECO:0000259|SMART:SM01242}.
DOMAIN 757 803 Integrin_b_cyt.
{ECO:0000259|SMART:SM01241}.
DISULFID 31 469 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 39 49 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 42 79 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 52 68 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 211 217 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 265 305 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 439 696 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 467 471 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 482 494 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 491 530 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 496 505 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 507 521 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 536 541 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 538 573 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 543 558 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 560 565 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 579 584 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 581 612 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 586 595 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 618 623 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 620 666 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 625 635 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 638 641 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 645 654 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 651 728 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 670 704 {ECO:0000256|PIRSR:PIRSR002512-1}.
SEQUENCE 803 AA; 88618 MW; 05B009BC50619630 CRC64;
MAETNLTLLT WAGILCCLIW SGSAQQGGSD CIKANAKSCG ECIQAGPNCG WCKKTDFLQE
GEPTSARCDD LAALKSKGCP EQDIENPRGS KRVLEDREVT NRKIGAAEKL KPEAITQIQP
QKLVLQLRVG EPQTFSLKFK RAEDYPIDLY YLMDLSYSMK DDLENVKSLG TALMREMEKI
TSDFRIGFGS FVEKTVMPYI STTPAKLRNP CTGDQNCTSP FSYKNVLSLT SEGNKFNELV
GKQHISGNLD SPEGGFDAIM QVAVCGDQIG WRNVTRLLVF STDAGFHFAG DGKLGGIVLP
NDGKCHLENN MYTMSHYYDY PSIAHLVQKL SENNIQTIFA VTEEFQAVYK ELKNLIPKSA
VGTLSSNSSN VIQLIIDAYN SLSSEVILEN SKLPKEVTIS YKSYCKNGVN DTQEDGRKCS
NISIGDEVRF EINVTANECP KKGQNETIKI KPLGFTEEVE IHLQFICDCL CQSEGEPNSP
ACHDGNGTFE CGACRCNEGR IGRLCECSTD EVNSEDMDAY CRRENSTEIC SNNGECICGQ
CVCKKRENTN EVYSGKYCEC DNFNCDRSNG LICGGNGICK CRVCECFPNF TGSACDCSLD
TTPCMAGNGQ ICNGRGTCEC GTCNCTDPKF QGPTCEMCQT CLGVCAEHKD CVQCRAFEKG
EKKETCSQEC MHFNMTRVES RDKLPQPGQP DPLSHCKEKD VDDCWFYFTY SVNSNGEASV
HVVETPECPS GPDIIPIVAG VVAGIVLIGL ALLLIWKLLM IIHDRREFAK FEKEKMNAKW
DTGENPIYKS AVTTVVNPKY EGK


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