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Integrin beta

 F6WLF2_CALJA            Unreviewed;       801 AA.
F6WLF2;
27-JUL-2011, integrated into UniProtKB/TrEMBL.
27-JUL-2011, sequence version 1.
20-DEC-2017, entry version 51.
RecName: Full=Integrin beta {ECO:0000256|RuleBase:RU000633};
Name=ITGB1 {ECO:0000313|Ensembl:ENSCJAP00000025265};
Callithrix jacchus (White-tufted-ear marmoset).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix.
NCBI_TaxID=9483 {ECO:0000313|Ensembl:ENSCJAP00000025265, ECO:0000313|Proteomes:UP000008225};
[1] {ECO:0000313|Ensembl:ENSCJAP00000025265, ECO:0000313|Proteomes:UP000008225}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Warren W., Ye L., Minx P., Worley K., Gibbs R., Wilson R.K.;
Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases.
[2] {ECO:0000313|Ensembl:ENSCJAP00000025265}
IDENTIFICATION.
Ensembl;
Submitted (JUN-2011) to UniProtKB.
-!- SUBCELLULAR LOCATION: Membrane {ECO:0000256|RuleBase:RU000633};
Single-pass type I membrane protein
{ECO:0000256|RuleBase:RU000633}.
-!- SIMILARITY: Belongs to the integrin beta chain family.
{ECO:0000256|RuleBase:RU000633}.
-!- CAUTION: The sequence shown here is derived from an Ensembl
automatic analysis pipeline and should be considered as
preliminary data. {ECO:0000313|Ensembl:ENSCJAP00000025265}.
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EMBL; ACFV01069499; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; ACFV01069500; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; ACFV01069501; -; NOT_ANNOTATED_CDS; Genomic_DNA.
RefSeq; XP_017829668.1; XM_017974179.1.
STRING; 9483.ENSCJAP00000025265; -.
Ensembl; ENSCJAT00000026698; ENSCJAP00000025265; ENSCJAG00000013701.
GeneID; 100394145; -.
KEGG; cjc:100394145; -.
CTD; 3688; -.
eggNOG; KOG1226; Eukaryota.
eggNOG; ENOG410XP60; LUCA.
GeneTree; ENSGT00760000119064; -.
InParanoid; F6WLF2; -.
KO; K05719; -.
OMA; FFDEDDC; -.
OrthoDB; EOG091G029W; -.
TreeFam; TF105392; -.
Proteomes; UP000008225; Chromosome 7.
GO; GO:0031410; C:cytoplasmic vesicle; IEA:Ensembl.
GO; GO:0043197; C:dendritic spine; IEA:Ensembl.
GO; GO:0009897; C:external side of plasma membrane; IEA:Ensembl.
GO; GO:0070062; C:extracellular exosome; IEA:Ensembl.
GO; GO:0030175; C:filopodium; IEA:Ensembl.
GO; GO:0005925; C:focal adhesion; IEA:Ensembl.
GO; GO:0034665; C:integrin alpha1-beta1 complex; IEA:Ensembl.
GO; GO:0034680; C:integrin alpha10-beta1 complex; IEA:Ensembl.
GO; GO:0034681; C:integrin alpha11-beta1 complex; IEA:Ensembl.
GO; GO:0034666; C:integrin alpha2-beta1 complex; IEA:Ensembl.
GO; GO:0034667; C:integrin alpha3-beta1 complex; IEA:Ensembl.
GO; GO:0034677; C:integrin alpha7-beta1 complex; IEA:Ensembl.
GO; GO:0014704; C:intercalated disc; IEA:Ensembl.
GO; GO:0071438; C:invadopodium membrane; IEA:Ensembl.
GO; GO:0045121; C:membrane raft; IEA:Ensembl.
GO; GO:0035748; C:myelin sheath abaxonal region; IEA:Ensembl.
GO; GO:0031594; C:neuromuscular junction; IEA:Ensembl.
GO; GO:0048471; C:perinuclear region of cytoplasm; IEA:Ensembl.
GO; GO:0032587; C:ruffle membrane; IEA:Ensembl.
GO; GO:0042383; C:sarcolemma; IEA:Ensembl.
GO; GO:0097060; C:synaptic membrane; IEA:Ensembl.
GO; GO:0003779; F:actin binding; IEA:Ensembl.
GO; GO:0019960; F:C-X3-C chemokine binding; IEA:Ensembl.
GO; GO:0045296; F:cadherin binding; IEA:Ensembl.
GO; GO:0098639; F:collagen binding involved in cell-matrix adhesion; IEA:Ensembl.
GO; GO:0001968; F:fibronectin binding; IEA:Ensembl.
GO; GO:0005178; F:integrin binding; IEA:Ensembl.
GO; GO:0043236; F:laminin binding; IEA:Ensembl.
GO; GO:0002020; F:protease binding; IEA:Ensembl.
GO; GO:0046982; F:protein heterodimerization activity; IEA:Ensembl.
GO; GO:0004872; F:receptor activity; IEA:InterPro.
GO; GO:0048675; P:axon extension; IEA:Ensembl.
GO; GO:0071711; P:basement membrane organization; IEA:Ensembl.
GO; GO:0007161; P:calcium-independent cell-matrix adhesion; IEA:Ensembl.
GO; GO:0055007; P:cardiac muscle cell differentiation; IEA:Ensembl.
GO; GO:0001708; P:cell fate specification; IEA:Ensembl.
GO; GO:0002042; P:cell migration involved in sprouting angiogenesis; IEA:Ensembl.
GO; GO:0033631; P:cell-cell adhesion mediated by integrin; IEA:Ensembl.
GO; GO:0071404; P:cellular response to low-density lipoprotein particle stimulus; IEA:Ensembl.
GO; GO:0048813; P:dendrite morphogenesis; IEA:Ensembl.
GO; GO:0021943; P:formation of radial glial scaffolds; IEA:Ensembl.
GO; GO:0000082; P:G1/S transition of mitotic cell cycle; IEA:Ensembl.
GO; GO:0008354; P:germ cell migration; IEA:Ensembl.
GO; GO:0034113; P:heterotypic cell-cell adhesion; IEA:Ensembl.
GO; GO:0001701; P:in utero embryonic development; IEA:Ensembl.
GO; GO:0007229; P:integrin-mediated signaling pathway; IEA:UniProtKB-KW.
GO; GO:0050901; P:leukocyte tethering or rolling; IEA:Ensembl.
GO; GO:0048333; P:mesodermal cell differentiation; IEA:Ensembl.
GO; GO:2000811; P:negative regulation of anoikis; IEA:Ensembl.
GO; GO:0045596; P:negative regulation of cell differentiation; IEA:Ensembl.
GO; GO:0035024; P:negative regulation of Rho protein signal transduction; IEA:Ensembl.
GO; GO:0045766; P:positive regulation of angiogenesis; IEA:Ensembl.
GO; GO:0043065; P:positive regulation of apoptotic process; IEA:Ensembl.
GO; GO:0008284; P:positive regulation of cell proliferation; IEA:Ensembl.
GO; GO:0043547; P:positive regulation of GTPase activity; IEA:Ensembl.
GO; GO:0051897; P:positive regulation of protein kinase B signaling; IEA:Ensembl.
GO; GO:1903078; P:positive regulation of protein localization to plasma membrane; IEA:Ensembl.
GO; GO:2000273; P:positive regulation of receptor activity; IEA:Ensembl.
GO; GO:0031623; P:receptor internalization; IEA:Ensembl.
GO; GO:0051726; P:regulation of cell cycle; IEA:Ensembl.
GO; GO:0010710; P:regulation of collagen catabolic process; IEA:Ensembl.
GO; GO:0045214; P:sarcomere organization; IEA:Ensembl.
GO; GO:0008542; P:visual learning; IEA:Ensembl.
Gene3D; 1.20.5.100; -; 1.
Gene3D; 1.20.5.630; -; 1.
InterPro; IPR021157; Cyt_c1_TM_anchor_C.
InterPro; IPR013111; EGF_extracell.
InterPro; IPR027071; Integrin_beta-1.
InterPro; IPR033760; Integrin_beta_N.
InterPro; IPR015812; Integrin_bsu.
InterPro; IPR014836; Integrin_bsu_cyt_dom.
InterPro; IPR037076; Integrin_bsu_cyt_dom_sf.
InterPro; IPR012896; Integrin_bsu_tail.
InterPro; IPR036349; Integrin_bsu_tail_dom_sf.
InterPro; IPR002369; Integrin_bsu_VWA.
InterPro; IPR032695; Integrin_dom_sf.
InterPro; IPR016201; PSI.
InterPro; IPR036465; vWFA_dom_sf.
PANTHER; PTHR10082; PTHR10082; 1.
PANTHER; PTHR10082:SF28; PTHR10082:SF28; 1.
Pfam; PF07974; EGF_2; 1.
Pfam; PF08725; Integrin_b_cyt; 1.
Pfam; PF07965; Integrin_B_tail; 1.
Pfam; PF00362; Integrin_beta; 1.
Pfam; PF17205; PSI_integrin; 1.
PIRSF; PIRSF002512; Integrin_B; 1.
PRINTS; PR01186; INTEGRINB.
SMART; SM00187; INB; 1.
SMART; SM01241; Integrin_b_cyt; 1.
SMART; SM01242; Integrin_B_tail; 1.
SMART; SM00423; PSI; 1.
SUPFAM; SSF53300; SSF53300; 1.
SUPFAM; SSF69179; SSF69179; 1.
SUPFAM; SSF69687; SSF69687; 1.
PROSITE; PS00243; INTEGRIN_BETA; 1.
3: Inferred from homology;
Cell adhesion {ECO:0000256|RuleBase:RU000633};
Complete proteome {ECO:0000313|Proteomes:UP000008225};
Disulfide bond {ECO:0000256|PIRSR:PIRSR002512-1};
Integrin {ECO:0000256|RuleBase:RU000633,
ECO:0000256|SAAS:SAAS00895071};
Membrane {ECO:0000256|SAAS:SAAS00895947, ECO:0000256|SAM:Phobius};
Reference proteome {ECO:0000313|Proteomes:UP000008225};
Signal {ECO:0000256|SAM:SignalP};
Transmembrane {ECO:0000256|SAAS:SAAS00895947,
ECO:0000256|SAM:Phobius};
Transmembrane helix {ECO:0000256|SAAS:SAAS00895947,
ECO:0000256|SAM:Phobius}.
SIGNAL 1 20 {ECO:0000256|SAM:SignalP}.
CHAIN 21 801 Integrin beta. {ECO:0000256|SAM:SignalP}.
/FTId=PRO_5003344592.
TRANSMEM 729 751 Helical. {ECO:0000256|SAM:Phobius}.
DOMAIN 26 76 PSI. {ECO:0000259|SMART:SM00423}.
DOMAIN 34 464 INB. {ECO:0000259|SMART:SM00187}.
DOMAIN 640 728 Integrin_B_tail.
{ECO:0000259|SMART:SM01242}.
DOMAIN 752 798 Integrin_b_cyt.
{ECO:0000259|SMART:SM01241}.
DISULFID 35 45 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 38 75 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 48 64 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 207 213 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 261 301 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 435 691 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 462 466 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 477 489 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 486 525 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 491 500 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 502 516 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 531 536 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 533 568 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 538 553 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 555 560 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 574 579 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 576 607 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 581 590 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 592 599 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 613 618 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 615 661 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 620 630 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 633 636 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 640 649 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 646 723 {ECO:0000256|PIRSR:PIRSR002512-1}.
DISULFID 665 699 {ECO:0000256|PIRSR:PIRSR002512-1}.
SEQUENCE 801 AA; 88905 MW; 2C389D7B4DEAF487 CRC64;
MNLQLIFWIG LISSVCCVFG QTDENRCLKA NAKSCGECIQ AGPNCGWCTN STFLQEGMPT
SARCDDLEAL KKKGCPPDDI ENPRGSKDIK KNKNVTNRSK GTAEKLKPED ITQIQPQQLV
LRLRSGEPQT FTLKFKRAED YPIDLYYLMD LSYSMKDDLE NVKSLGTDLM NEMRRITSDF
RIGFGSFVEK TVMPYISTTP AKLRNPCTSE QNCTSPFSYK NVLSLTNKGE VFNELVGKQR
ISGNLDSPEG GFDAIMQVAV CGSLIGWRNV TRLLVFSTDA GFHFAGDGKL GGIVLPNDGQ
CHLENNMYTM SHYYDYPSIA HLVQKLSENN IQTIFAVTEE FQPVYKELKN LIPKSAVGTL
SSNSSNVIQL IIDAYNSLSS EVILENSKLS EGVTISYKSY CKNGVNGTGE NGRKCSNISI
GDEVQFEISI TSNKCPKKDS DAFKIRPLGF TEEVEVILQY ICECECQSEG IPGSPKCHEG
NGTFECGACR CNEGRVGRHC ECSTDEVNSE DMDAYCRKEN SSEICSNNGE CICGQCVCRK
RDNTNEIYSG KFCECDNFNC DRSNGLICGG NGVCKCRVCE CYPNYTGSAC DCSLDTSTCV
ASNGQICNGR GICECGVCKC TDPKFQGQTC EMCQTCLGVC AEHKECVQCR AFNKGEKKDT
CAQECSYFNI TKVESREKLP QPVQPDPVSH CKEKDVDDCW FYFTYSVNGN NEIMVHVVEN
PECPTGPDII PIVAGVVAGI VLIGLALLLI WKLLMIIHDR REFAKFEKEK MNAKWDTQEN
PIYKSPINNF KNPNYGRKTG L


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