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Interferon-induced transmembrane protein 2 (Dispanin subfamily A member 2c) (DSPA2c) (Interferon-inducible protein 1-8D)

 IFM2_HUMAN              Reviewed;         132 AA.
Q01629; Q6FH82; Q96DA8;
01-JUL-1993, integrated into UniProtKB/Swiss-Prot.
02-MAR-2010, sequence version 2.
20-JUN-2018, entry version 141.
RecName: Full=Interferon-induced transmembrane protein 2;
AltName: Full=Dispanin subfamily A member 2c;
Short=DSPA2c;
AltName: Full=Interferon-inducible protein 1-8D;
Name=IFITM2;
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606;
[1]
NUCLEOTIDE SEQUENCE [MRNA], AND VARIANTS THR-41 AND VAL-121.
PubMed=1906403; DOI=10.1111/j.1432-1033.1991.tb16139.x;
Lewin A.R., Reid L.E., McMahon M., Stark G.R., Kerr I.M.;
"Molecular analysis of a human interferon-inducible gene family.";
Eur. J. Biochem. 199:417-423(1991).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], AND VARIANT ALA-33.
Ebert L., Schick M., Neubert P., Schatten R., Henze S., Korn B.;
"Cloning of human full open reading frames in Gateway(TM) system entry
vector (pDONR201).";
Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=16554811; DOI=10.1038/nature04632;
Taylor T.D., Noguchi H., Totoki Y., Toyoda A., Kuroki Y., Dewar K.,
Lloyd C., Itoh T., Takeda T., Kim D.-W., She X., Barlow K.F.,
Bloom T., Bruford E., Chang J.L., Cuomo C.A., Eichler E.,
FitzGerald M.G., Jaffe D.B., LaButti K., Nicol R., Park H.-S.,
Seaman C., Sougnez C., Yang X., Zimmer A.R., Zody M.C., Birren B.W.,
Nusbaum C., Fujiyama A., Hattori M., Rogers J., Lander E.S.,
Sakaki Y.;
"Human chromosome 11 DNA sequence and analysis including novel gene
identification.";
Nature 440:497-500(2006).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], AND VARIANTS ALA-33; THR-41
AND VAL-121.
TISSUE=Lung;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[5]
FUNCTION IN VIRAL RESISTANCE.
PubMed=20064371; DOI=10.1016/j.cell.2009.12.017;
Brass A.L., Huang I.C., Benita Y., John S.P., Krishnan M.N.,
Feeley E.M., Ryan B.J., Weyer J.L., van der Weyden L., Fikrig E.,
Adams D.J., Xavier R.J., Farzan M., Elledge S.J.;
"The IFITM proteins mediate cellular resistance to influenza A H1N1
virus, West Nile virus, and dengue virus.";
Cell 139:1243-1254(2009).
[6]
FUNCTION, AND INDUCTION.
PubMed=19544527; DOI=10.1002/ijc.24669;
Daniel-Carmi V., Makovitzki-Avraham E., Reuven E.M., Goldstein I.,
Zilkha N., Rotter V., Tzehoval E., Eisenbach L.;
"The human 1-8D gene (IFITM2) is a novel p53 independent pro-apoptotic
gene.";
Int. J. Cancer 125:2810-2819(2009).
[7]
FUNCTION.
PubMed=20534863; DOI=10.1128/JVI.02199-09;
Jiang D., Weidner J.M., Qing M., Pan X.B., Guo H., Xu C., Zhang X.,
Birk A., Chang J., Shi P.Y., Block T.M., Guo J.T.;
"Identification of five interferon-induced cellular proteins that
inhibit west nile virus and dengue virus infections.";
J. Virol. 84:8332-8341(2010).
[8]
FUNCTION.
PubMed=20943977; DOI=10.1128/JVI.01328-10;
Weidner J.M., Jiang D., Pan X.B., Chang J., Block T.M., Guo J.T.;
"Interferon-induced cell membrane proteins, IFITM3 and tetherin,
inhibit vesicular stomatitis virus infection via distinct
mechanisms.";
J. Virol. 84:12646-12657(2010).
[9]
ACETYLATION [LARGE SCALE ANALYSIS] AT MET-1, AND IDENTIFICATION BY
MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Cervix carcinoma;
PubMed=20068231; DOI=10.1126/scisignal.2000475;
Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L.,
Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S.,
Mann M.;
"Quantitative phosphoproteomics reveals widespread full
phosphorylation site occupancy during mitosis.";
Sci. Signal. 3:RA3-RA3(2010).
[10]
REVIEW.
PubMed=21166591; DOI=10.1089/jir.2010.0112;
Siegrist F., Ebeling M., Certa U.;
"The small interferon-induced transmembrane genes and proteins.";
J. Interferon Cytokine Res. 31:183-197(2011).
[11]
FUNCTION.
PubMed=21177806; DOI=10.1128/JVI.01531-10;
Lu J., Pan Q., Rong L., He W., Liu S.L., Liang C.;
"The IFITM proteins inhibit HIV-1 infection.";
J. Virol. 85:2126-2137(2011).
[12]
ERRATUM.
Lu J., Pan Q., Rong L., He W., Liu S.L., Liang C.;
J. Virol. 85:4043-4043(2011).
[13]
FUNCTION.
PubMed=21253575; DOI=10.1371/journal.ppat.1001258;
Huang I.C., Bailey C.C., Weyer J.L., Radoshitzky S.R., Becker M.M.,
Chiang J.J., Brass A.L., Ahmed A.A., Chi X., Dong L., Longobardi L.E.,
Boltz D., Kuhn J.H., Elledge S.J., Bavari S., Denison M.R., Choe H.,
Farzan M.;
"Distinct patterns of IFITM-mediated restriction of filoviruses, SARS
coronavirus, and influenza A virus.";
PLoS Pathog. 7:E1001258-E1001258(2011).
[14]
FUNCTION.
PubMed=22479637; DOI=10.1371/journal.pone.0034508;
Chan Y.K., Huang I.C., Farzan M.;
"IFITM proteins restrict antibody-dependent enhancement of dengue
virus infection.";
PLoS ONE 7:E34508-E34508(2012).
[15]
GENE FAMILY.
PubMed=22363774; DOI=10.1371/journal.pone.0031961;
Sallman Almen M., Bringeland N., Fredriksson R., Schioth H.B.;
"The dispanins: a novel gene family of ancient origin that contains 14
human members.";
PLoS ONE 7:E31961-E31961(2012).
[16]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Erythroleukemia;
PubMed=23186163; DOI=10.1021/pr300630k;
Zhou H., Di Palma S., Preisinger C., Peng M., Polat A.N., Heck A.J.,
Mohammed S.;
"Toward a comprehensive characterization of a human cancer cell
phosphoproteome.";
J. Proteome Res. 12:260-271(2013).
-!- FUNCTION: IFN-induced antiviral protein which inhibits the entry
of viruses to the host cell cytoplasm, permitting endocytosis, but
preventing subsequent viral fusion and release of viral contents
into the cytosol. Active against multiple viruses, including
influenza A virus, SARS coronavirus (SARS-CoV), Marburg virus
(MARV), Ebola virus (EBOV), Dengue virus (DNV), West Nile virus
(WNV), human immunodeficiency virus type 1 (HIV-1) and vesicular
stomatitis virus (VSV). Can inhibit: influenza virus hemagglutinin
protein-mediated viral entry, MARV and EBOV GP1,2-mediated viral
entry, SARS-CoV S protein-mediated viral entry and VSV G protein-
mediated viral entry. Induces cell cycle arrest and mediates
apoptosis by caspase activation and in p53-independent manner.
{ECO:0000269|PubMed:19544527, ECO:0000269|PubMed:20064371,
ECO:0000269|PubMed:20534863, ECO:0000269|PubMed:20943977,
ECO:0000269|PubMed:21177806, ECO:0000269|PubMed:21253575,
ECO:0000269|PubMed:22479637}.
-!- SUBUNIT: Interacts with CD81. {ECO:0000250}.
-!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Single-pass
membrane protein {ECO:0000305}.
-!- INDUCTION: By IFN-alpha and IFNG/IFN-gamma. Down-regulated by
p53/TP53. {ECO:0000269|PubMed:19544527}.
-!- PTM: Palmitoylation on membrane-proximal cysteines controls
clustering in membrane compartments and antiviral activity against
influenza virus. {ECO:0000250}.
-!- SIMILARITY: Belongs to the CD225/Dispanin family. {ECO:0000305}.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution-NoDerivs License
-----------------------------------------------------------------------
EMBL; X57351; CAA40625.1; -; mRNA.
EMBL; CR541874; CAG46672.1; -; mRNA.
EMBL; AC136475; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; BC009696; AAH09696.1; -; mRNA.
CCDS; CCDS41583.1; -.
PIR; S17183; S17183.
RefSeq; NP_006426.2; NM_006435.2.
UniGene; Hs.709321; -.
ProteinModelPortal; Q01629; -.
BioGrid; 115832; 2.
IntAct; Q01629; 6.
STRING; 9606.ENSP00000382714; -.
TCDB; 8.A.58.1.2; the dispanin (dispanin) family.
iPTMnet; Q01629; -.
PhosphoSitePlus; Q01629; -.
SwissPalm; Q01629; -.
BioMuta; IFITM2; -.
DMDM; 290457648; -.
EPD; Q01629; -.
MaxQB; Q01629; -.
PaxDb; Q01629; -.
PeptideAtlas; Q01629; -.
PRIDE; Q01629; -.
ProteomicsDB; 57974; -.
DNASU; 10581; -.
Ensembl; ENST00000399817; ENSP00000382714; ENSG00000185201.
Ensembl; ENST00000616316; ENSP00000484689; ENSG00000185201.
GeneID; 10581; -.
KEGG; hsa:10581; -.
UCSC; uc001lox.5; human.
CTD; 10581; -.
DisGeNET; 10581; -.
EuPathDB; HostDB:ENSG00000185201.16; -.
GeneCards; IFITM2; -.
HGNC; HGNC:5413; IFITM2.
HPA; HPA004337; -.
MIM; 605578; gene.
neXtProt; NX_Q01629; -.
OpenTargets; ENSG00000185201; -.
PharmGKB; PA29654; -.
eggNOG; ENOG410J2DU; Eukaryota.
eggNOG; ENOG4112C1U; LUCA.
GeneTree; ENSGT00390000003476; -.
HOGENOM; HOG000115781; -.
HOVERGEN; HBG001182; -.
InParanoid; Q01629; -.
KO; K06566; -.
OMA; EEHEVAT; -.
OrthoDB; EOG091G1143; -.
PhylomeDB; Q01629; -.
TreeFam; TF334894; -.
Reactome; R-HSA-909733; Interferon alpha/beta signaling.
ChiTaRS; IFITM2; human.
GenomeRNAi; 10581; -.
PRO; PR:Q01629; -.
Proteomes; UP000005640; Chromosome 11.
Bgee; ENSG00000185201; -.
CleanEx; HS_IFITM2; -.
ExpressionAtlas; Q01629; baseline and differential.
Genevisible; Q01629; HS.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0005886; C:plasma membrane; TAS:Reactome.
GO; GO:0051607; P:defense response to virus; IEA:UniProtKB-KW.
GO; GO:0006955; P:immune response; TAS:ProtInc.
GO; GO:0046597; P:negative regulation of viral entry into host cell; IDA:UniProtKB.
GO; GO:0045071; P:negative regulation of viral genome replication; IDA:UniProtKB.
GO; GO:0035455; P:response to interferon-alpha; IDA:UniProtKB.
GO; GO:0035456; P:response to interferon-beta; IDA:UniProtKB.
GO; GO:0034341; P:response to interferon-gamma; IDA:UniProtKB.
GO; GO:0009615; P:response to virus; IDA:UniProtKB.
GO; GO:0060337; P:type I interferon signaling pathway; TAS:Reactome.
InterPro; IPR007593; CD225/Dispanin_fam.
Pfam; PF04505; CD225; 1.
1: Evidence at protein level;
Acetylation; Antiviral defense; Cell membrane; Complete proteome;
Immunity; Innate immunity; Lipoprotein; Membrane; Palmitate;
Polymorphism; Reference proteome; Transmembrane; Transmembrane helix.
CHAIN 1 132 Interferon-induced transmembrane protein
2.
/FTId=PRO_0000153728.
TOPO_DOM 1 56 Cytoplasmic. {ECO:0000255}.
INTRAMEM 57 77 Helical. {ECO:0000250|UniProtKB:P13164}.
TOPO_DOM 78 106 Cytoplasmic. {ECO:0000255}.
TRANSMEM 107 127 Helical. {ECO:0000255}.
TOPO_DOM 128 132 Extracellular. {ECO:0000255}.
MOD_RES 1 1 N-acetylmethionine.
{ECO:0000244|PubMed:20068231}.
LIPID 70 70 S-palmitoyl cysteine. {ECO:0000250}.
LIPID 71 71 S-palmitoyl cysteine. {ECO:0000250}.
LIPID 104 104 S-palmitoyl cysteine. {ECO:0000250}.
VARIANT 33 33 V -> A (in dbSNP:rs1058900).
{ECO:0000269|PubMed:15489334,
ECO:0000269|Ref.2}.
/FTId=VAR_062677.
VARIANT 41 41 M -> T (in dbSNP:rs14408).
{ECO:0000269|PubMed:15489334,
ECO:0000269|PubMed:1906403}.
/FTId=VAR_014848.
VARIANT 121 121 I -> V (in dbSNP:rs1059091).
{ECO:0000269|PubMed:15489334,
ECO:0000269|PubMed:1906403}.
/FTId=VAR_060470.
CONFLICT 33 33 V -> G (in Ref. 1; CAA40625).
{ECO:0000305}.
SEQUENCE 132 AA; 14632 MW; 232A32D109EEBF5D CRC64;
MNHIVQTFSP VNSGQPPNYE MLKEEQEVAM LGVPHNPAPP MSTVIHIRSE TSVPDHVVWS
LFNTLFMNTC CLGFIAFAYS VKSRDRKMVG DVTGAQAYAS TAKCLNIWAL ILGIFMTILL
IIIPVLVVQA QR


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