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Jumonji domain containing 2B (Lysine (K)-specific demethylase 4B)

 Q1LUQ0_DANRE            Unreviewed;      1134 AA.
Q1LUQ0;
30-MAY-2006, integrated into UniProtKB/TrEMBL.
30-MAY-2006, sequence version 1.
27-SEP-2017, entry version 96.
SubName: Full=Jumonji domain containing 2B {ECO:0000313|EMBL:AAI71698.1};
SubName: Full=Lysine (K)-specific demethylase 4B {ECO:0000313|Ensembl:ENSDARP00000133766};
Name=kdm4b {ECO:0000313|Ensembl:ENSDARP00000133766,
ECO:0000313|ZFIN:ZDB-GENE-060503-664};
Synonyms=jmjd2b {ECO:0000313|EMBL:AAI71698.1};
Danio rerio (Zebrafish) (Brachydanio rerio).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
Cyprinidae; Danio.
NCBI_TaxID=7955 {ECO:0000313|Ensembl:ENSDARP00000133766, ECO:0000313|Proteomes:UP000000437};
[1] {ECO:0000313|EMBL:AAI71698.1}
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
NIH - Zebrafish Gene Collection (ZGC) project;
Submitted (NOV-2008) to the EMBL/GenBank/DDBJ databases.
[2] {ECO:0000313|Ensembl:ENSDARP00000133766, ECO:0000313|Proteomes:UP000000437}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000133766,
ECO:0000313|Proteomes:UP000000437};
PubMed=23594743; DOI=10.1038/nature12111;
Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C.,
Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L.,
McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C.,
Koch R., Rauch G.J., White S., Chow W., Kilian B., Quintais L.T.,
Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T.,
Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F.,
Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H.,
Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J.,
Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P.,
Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G.,
Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D.,
Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K.,
Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C.,
Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J.,
Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
Saunders D., Wallis J., Babbage A., Hammond S.,
Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A.,
Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D.,
Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z.,
Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J.,
Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C.,
Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C.,
Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J.,
Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C.,
Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H.,
Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J.,
Stemple D.L.;
"The zebrafish reference genome sequence and its relationship to the
human genome.";
Nature 496:498-503(2013).
[3] {ECO:0000313|Ensembl:ENSDARP00000133766}
IDENTIFICATION.
STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000133766};
Ensembl;
Submitted (NOV-2015) to UniProtKB.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00773113}.
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EMBL; BX927276; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; CU074310; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; BC171698; AAI71698.1; -; mRNA.
EMBL; BC171700; AAI71700.1; -; mRNA.
RefSeq; NP_001076274.1; NM_001082805.1.
UniGene; Dr.81759; -.
STRING; 7955.ENSDARP00000106448; -.
Ensembl; ENSDART00000162523; ENSDARP00000133766; ENSDARG00000099675.
GeneID; 556504; -.
KEGG; dre:556504; -.
CTD; 23030; -.
ZFIN; ZDB-GENE-060503-664; kdm4b.
eggNOG; KOG0958; Eukaryota.
eggNOG; COG5141; LUCA.
GeneTree; ENSGT00530000063342; -.
HOGENOM; HOG000231125; -.
HOVERGEN; HBG080483; -.
KO; K06709; -.
OMA; LKENRHW; -.
OrthoDB; EOG091G01FR; -.
TreeFam; TF106449; -.
Reactome; R-DRE-5693565; Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks.
Proteomes; UP000000437; Chromosome 22.
Bgee; ENSDARG00000099675; -.
GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
Gene3D; 3.30.40.10; -; 2.
InterPro; IPR034732; EPHD.
InterPro; IPR003347; JmjC_dom.
InterPro; IPR003349; JmjN.
InterPro; IPR002999; Tudor.
InterPro; IPR011011; Znf_FYVE_PHD.
InterPro; IPR001965; Znf_PHD.
InterPro; IPR013083; Znf_RING/FYVE/PHD.
Pfam; PF02373; JmjC; 1.
Pfam; PF02375; JmjN; 1.
SMART; SM00558; JmjC; 1.
SMART; SM00545; JmjN; 1.
SMART; SM00249; PHD; 2.
SMART; SM00333; TUDOR; 2.
SUPFAM; SSF57903; SSF57903; 1.
PROSITE; PS51805; EPHD; 1.
PROSITE; PS51184; JMJC; 1.
PROSITE; PS51183; JMJN; 1.
1: Evidence at protein level;
Coiled coil {ECO:0000256|SAM:Coils};
Complete proteome {ECO:0000313|Proteomes:UP000000437};
Metal-binding {ECO:0000256|SAAS:SAAS00592111};
Nucleus {ECO:0000256|SAAS:SAAS00773228};
Proteomics identification {ECO:0000213|PeptideAtlas:Q1LUQ0};
Reference proteome {ECO:0000313|Proteomes:UP000000437};
Zinc {ECO:0000256|SAAS:SAAS00592111};
Zinc-finger {ECO:0000256|SAAS:SAAS00592111}.
DOMAIN 95 137 JmjN. {ECO:0000259|PROSITE:PS51183}.
DOMAIN 223 389 JmjC. {ECO:0000259|PROSITE:PS51184}.
DOMAIN 780 893 PHD-type. {ECO:0000259|PROSITE:PS51805}.
COILED 473 523 {ECO:0000256|SAM:Coils}.
SEQUENCE 1134 AA; 127470 MW; 306BC1B5D4E59EE4 CRC64;
MDPSLPPDPN PAETEPSADV TPPADTDQDS PINPLVDPQP CDTPISDLVH EPAAPAEPTP
AQGLKPELPA PELTTQNLIP GPAPAPPPGA NFNKIMTFRP TMEEFKDFGK YIAYMETQGA
HVAGLAKVIP PKEWKPRRSY ETIEDMVIPA PIMQVVTGQS GLFTQYNIQK KSMTVGEYRK
LANSKKYNTP QHKDFDDLER KYWKNLTFVS PIYGADISGS LYDPDISEWN IGHLNTLLDM
VEQECGIVIE GVNTPYLYFG MWKTTFAWHT EDMDLYSINY LHFGKPKSWY AIPPEHGKRL
ERLAQGFFPG SSQGCDAFLR HKMTLISPSI LKKYSIPFDR ITQEEGEFMI TFPYGYHAGF
NHGFNCAEST NFATLRWIDY GKMAAQCTCR KDMVKISMDV FVRRLQPERY TQWKQGKDTM
VLDHLKPTSL SSPELEHWRK NRVTFREKVL RRAQAKMKQF RRLKPEDLKV LMEAGVELDM
EEYQRKVEEH DEQRRQQRDE RMAREAMLTL EALEREEQEQ AEAALRGGGV EEIKADFQDP
PVENGEKKKK KKKKLQLTDE MSFQEVFEQF TTASEMQNQS NGAAPLQTNP FTKLKKKVEV
KKSRRHPISK PPMRSPHSIV KQEASSDEEL YSGLPVGGGV THESKKPEDS DLWQNRSPNF
LAEKQFNAAM STIEPYCAIC TLFCPYTQSV KDPFHISDMS GLVSRVGCRT RPLVPEMCFS
AGAENMEPLS SNSHIADDGT SVLLSCSGCN LQVHASCYGV NPQTKQEGWM CSRCTTVAWT
AACCLCSLRG GALKKTTDER WVHVICAIAV AEVRFVNAIE REPVDVTAVP ETRKSLKCVY
CHKTTKQIFG ACIQCSQDNC STSFHVTCAL LAGVVMKPAD WPYVVSVTCH KHKLTNQKAK
SGSRDLSLGQ EVIGRNSNGW FYRCVITGTG TQTYYEVNFD DGSYCDNIFP ENLLSHDCLR
NGPPELGELV VVKTVDGRVL NASYIKEHVH RYYQVEFQDE TQLLLKRSEI HSLDQELPKR
VMSRLATVNQ QQPQAQPSDE PLAAKRPRLP TPPPTLAIEP SALPPELVST FLPPSITANT
STAPCLPPAA LPVSAPPEPS ESYTHSSSYI AYMESLLKSD FPAEDGEPGL EPMY


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