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KICSTOR complex protein kaptin (Actin-associated protein 2E4)

 KPTN_HUMAN              Reviewed;         436 AA.
Q9Y664; B3KN86; B4DQ76; Q96GT1;
30-MAY-2006, integrated into UniProtKB/Swiss-Prot.
30-MAY-2006, sequence version 2.
25-OCT-2017, entry version 120.
RecName: Full=KICSTOR complex protein kaptin {ECO:0000305|PubMed:10099934};
AltName: Full=Actin-associated protein 2E4 {ECO:0000303|PubMed:10099934};
Name=KPTN {ECO:0000312|HGNC:HGNC:6404};
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606;
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
PubMed=1372044;
Bearer E.L.;
"An actin-associated protein present in the microtubule organizing
center and the growth cones of PC-12 cells.";
J. Neurosci. 12:750-761(1992).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], SUBUNIT, AND SUBCELLULAR LOCATION.
PubMed=10099934; DOI=10.1016/S0171-9335(99)80013-2;
Bearer E.L., Abraham M.T.;
"2E4 (kaptin): a novel actin-associated protein from human blood
platelets found in lamellipodia and the tips of the stereocilia of the
inner ear.";
Eur. J. Cell Biol. 78:117-126(1999).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
PubMed=14702039; DOI=10.1038/ng1285;
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R.,
Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H.,
Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.,
Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K.,
Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A.,
Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M.,
Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y.,
Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M.,
Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K.,
Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S.,
Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J.,
Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y.,
Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N.,
Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S.,
Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S.,
Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O.,
Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H.,
Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B.,
Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y.,
Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T.,
Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y.,
Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S.,
Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T.,
Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M.,
Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T.,
Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K.,
Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R.,
Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.;
"Complete sequencing and characterization of 21,243 full-length human
cDNAs.";
Nat. Genet. 36:40-45(2004).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=15057824; DOI=10.1038/nature02399;
Grimwood J., Gordon L.A., Olsen A.S., Terry A., Schmutz J.,
Lamerdin J.E., Hellsten U., Goodstein D., Couronne O., Tran-Gyamfi M.,
Aerts A., Altherr M., Ashworth L., Bajorek E., Black S., Branscomb E.,
Caenepeel S., Carrano A.V., Caoile C., Chan Y.M., Christensen M.,
Cleland C.A., Copeland A., Dalin E., Dehal P., Denys M., Detter J.C.,
Escobar J., Flowers D., Fotopulos D., Garcia C., Georgescu A.M.,
Glavina T., Gomez M., Gonzales E., Groza M., Hammon N., Hawkins T.,
Haydu L., Ho I., Huang W., Israni S., Jett J., Kadner K., Kimball H.,
Kobayashi A., Larionov V., Leem S.-H., Lopez F., Lou Y., Lowry S.,
Malfatti S., Martinez D., McCready P.M., Medina C., Morgan J.,
Nelson K., Nolan M., Ovcharenko I., Pitluck S., Pollard M.,
Popkie A.P., Predki P., Quan G., Ramirez L., Rash S., Retterer J.,
Rodriguez A., Rogers S., Salamov A., Salazar A., She X., Smith D.,
Slezak T., Solovyev V., Thayer N., Tice H., Tsai M., Ustaszewska A.,
Vo N., Wagner M., Wheeler J., Wu K., Xie G., Yang J., Dubchak I.,
Furey T.S., DeJong P., Dickson M., Gordon D., Eichler E.E.,
Pennacchio L.A., Richardson P., Stubbs L., Rokhsar D.S., Myers R.M.,
Rubin E.M., Lucas S.M.;
"The DNA sequence and biology of human chromosome 19.";
Nature 428:529-535(2004).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L.,
Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R.,
Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V.,
Hannenhalli S., Turner R., Yooseph S., Lu F., Nusskern D.R.,
Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H.,
Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G.,
Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W.,
Venter J.C.;
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases.
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
TISSUE=Muscle;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[7]
ACETYLATION [LARGE SCALE ANALYSIS] AT MET-1, AND IDENTIFICATION BY
MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=22814378; DOI=10.1073/pnas.1210303109;
Van Damme P., Lasa M., Polevoda B., Gazquez C., Elosegui-Artola A.,
Kim D.S., De Juan-Pardo E., Demeyer K., Hole K., Larrea E.,
Timmerman E., Prieto J., Arnesen T., Sherman F., Gevaert K.,
Aldabe R.;
"N-terminal acetylome analyses and functional insights of the N-
terminal acetyltransferase NatB.";
Proc. Natl. Acad. Sci. U.S.A. 109:12449-12454(2012).
[8]
FUNCTION, IDENTIFICATION IN THE KICSTOR COMPLEX, AND SUBCELLULAR
LOCATION.
PubMed=28199306; DOI=10.1038/nature21423;
Wolfson R.L., Chantranupong L., Wyant G.A., Gu X., Orozco J.M.,
Shen K., Condon K.J., Petri S., Kedir J., Scaria S.M.,
Abu-Remaileh M., Frankel W.N., Sabatini D.M.;
"KICSTOR recruits GATOR1 to the lysosome and is necessary for
nutrients to regulate mTORC1.";
Nature 543:438-442(2017).
[9]
VARIANT MRT41 241-MET--GLN-246 INS, CHARACTERIZATION OF VARIANT MRT41
241-MET--GLN-246 INS, AND SUBCELLULAR LOCATION.
PubMed=24239382; DOI=10.1016/j.ajhg.2013.10.001;
Baple E.L., Maroofian R., Chioza B.A., Izadi M., Cross H.E.,
Al-Turki S., Barwick K., Skrzypiec A., Pawlak R., Wagner K.,
Coblentz R., Zainy T., Patton M.A., Mansour S., Rich P., Qualmann B.,
Hurles M.E., Kessels M.M., Crosby A.H.;
"Mutations in KPTN cause macrocephaly, neurodevelopmental delay, and
seizures.";
Am. J. Hum. Genet. 94:87-94(2014).
-!- FUNCTION: As part of the KICSTOR complex functions in the amino
acid-sensing branch of the TORC1 signaling pathway. Recruits, in
an amino acid-independent manner, the GATOR1 complex to the
lysosomal membranes and allows its interaction with GATOR2 and the
RAG GTPases. Functions upstream of the RAG GTPases and is required
to negatively regulate mTORC1 signaling in absence of amino acids.
In absence of the KICSTOR complex mTORC1 is constitutively
localized to the lysosome and activated. The KICSTOR complex is
also probably involved in the regulation of mTORC1 by glucose.
{ECO:0000269|PubMed:28199306}.
-!- SUBUNIT: Part of the KICSTOR complex composed of KPTN, ITFG2,
C12orf66 and SZT2. SZT2 probably serves as a link between the
other three proteins in the KICSTOR complex and mediates the
direct interaction with the GATOR1 complex (PubMed:28199306). May
associate with F-actin filaments (PubMed:10099934).
{ECO:0000269|PubMed:10099934, ECO:0000269|PubMed:28199306}.
-!- SUBCELLULAR LOCATION: Lysosome membrane
{ECO:0000269|PubMed:28199306}. Cell projection, lamellipodium
{ECO:0000269|PubMed:10099934, ECO:0000269|PubMed:24239382}. Cell
projection, stereocilium {ECO:0000250|UniProtKB:A0A1D5PJB7}.
Note=Localization to lysosomes is amino acid-independent
(PubMed:28199306). Colocalizes with F-actin (PubMed:24239382).
{ECO:0000269|PubMed:24239382, ECO:0000269|PubMed:28199306}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=1;
IsoId=Q9Y664-1; Sequence=Displayed;
Name=2;
IsoId=Q9Y664-2; Sequence=VSP_053990;
Note=No experimental confirmation available.;
-!- DISEASE: Mental retardation, autosomal recessive 41 (MRT41)
[MIM:615637]: A disorder characterized by significantly below
average general intellectual functioning associated with
impairments in adaptive behavior and manifested during the
developmental period. MRT41 most consistent features are global
developmental delay, macrocephaly with frontal bossing, high
levels of anxiety, and some features suggestive of a pervasive
developmental disorder. Less common features include fifth finger
clinodactyly, recurrent pneumonia, and hepatosplenomegaly.
{ECO:0000269|PubMed:24239382}. Note=The disease is caused by
mutations affecting the gene represented in this entry.
-!- SEQUENCE CAUTION:
Sequence=AAD39358.1; Type=Frameshift; Positions=8, 14, 410, 419; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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EMBL; AF105369; AAD39358.1; ALT_FRAME; mRNA.
EMBL; AF243529; AAF98790.1; ALT_FRAME; Genomic_DNA.
EMBL; AK023996; BAG51248.1; -; mRNA.
EMBL; AK298672; BAG60838.1; -; mRNA.
EMBL; AC073548; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; CH471126; EAW57487.1; -; Genomic_DNA.
EMBL; BC009249; AAH09249.1; -; mRNA.
CCDS; CCDS42583.1; -. [Q9Y664-1]
RefSeq; NP_001278225.1; NM_001291296.1.
RefSeq; NP_008990.2; NM_007059.3. [Q9Y664-1]
UniGene; Hs.25441; -.
ProteinModelPortal; Q9Y664; -.
SMR; Q9Y664; -.
BioGrid; 116306; 40.
CORUM; Q9Y664; -.
IntAct; Q9Y664; 1.
STRING; 9606.ENSP00000337850; -.
iPTMnet; Q9Y664; -.
PhosphoSitePlus; Q9Y664; -.
BioMuta; KPTN; -.
DMDM; 108936022; -.
EPD; Q9Y664; -.
PaxDb; Q9Y664; -.
PeptideAtlas; Q9Y664; -.
PRIDE; Q9Y664; -.
Ensembl; ENST00000338134; ENSP00000337850; ENSG00000118162. [Q9Y664-1]
GeneID; 11133; -.
KEGG; hsa:11133; -.
UCSC; uc002pgy.4; human. [Q9Y664-1]
CTD; 11133; -.
DisGeNET; 11133; -.
EuPathDB; HostDB:ENSG00000118162.13; -.
GeneCards; KPTN; -.
HGNC; HGNC:6404; KPTN.
HPA; HPA041710; -.
HPA; HPA041796; -.
MalaCards; KPTN; -.
MIM; 615620; gene.
MIM; 615637; phenotype.
neXtProt; NX_Q9Y664; -.
OpenTargets; ENSG00000118162; -.
Orphanet; 397612; Macrocephaly-developmental delay syndrome.
PharmGKB; PA30194; -.
eggNOG; ENOG410IJRR; Eukaryota.
eggNOG; ENOG41100KB; LUCA.
GeneTree; ENSGT00390000002548; -.
HOGENOM; HOG000008052; -.
HOVERGEN; HBG061148; -.
InParanoid; Q9Y664; -.
OMA; FTPFQLY; -.
OrthoDB; EOG091G0BBT; -.
PhylomeDB; Q9Y664; -.
TreeFam; TF328973; -.
ChiTaRS; KPTN; human.
GeneWiki; Kaptin_(actin_binding_protein); -.
GenomeRNAi; 11133; -.
PRO; PR:Q9Y664; -.
Proteomes; UP000005640; Chromosome 19.
Bgee; ENSG00000118162; -.
CleanEx; HS_KPTN; -.
ExpressionAtlas; Q9Y664; baseline and differential.
Genevisible; Q9Y664; HS.
GO; GO:0140007; C:KICSTOR complex; IDA:UniProtKB.
GO; GO:0030027; C:lamellipodium; IDA:UniProtKB.
GO; GO:0005765; C:lysosomal membrane; IEA:UniProtKB-SubCell.
GO; GO:0098871; C:postsynaptic actin cytoskeleton; IDA:UniProtKB.
GO; GO:0032420; C:stereocilium; ISS:UniProtKB.
GO; GO:0051015; F:actin filament binding; IDA:UniProtKB.
GO; GO:0007015; P:actin filament organization; IEA:InterPro.
GO; GO:0034198; P:cellular response to amino acid starvation; IMP:UniProtKB.
GO; GO:0042149; P:cellular response to glucose starvation; IMP:UniProtKB.
GO; GO:1904262; P:negative regulation of TORC1 signaling; IMP:UniProtKB.
GO; GO:0061462; P:protein localization to lysosome; IMP:UniProtKB.
InterPro; IPR029982; Kptn.
PANTHER; PTHR15435; PTHR15435; 1.
1: Evidence at protein level;
Acetylation; Actin-binding; Alternative splicing; Cell projection;
Complete proteome; Disease mutation; Lysosome; Membrane;
Mental retardation; Reference proteome.
CHAIN 1 436 KICSTOR complex protein kaptin.
/FTId=PRO_0000239234.
MOD_RES 1 1 N-acetylmethionine.
{ECO:0000244|PubMed:22814378}.
VAR_SEQ 1 240 Missing (in isoform 2).
{ECO:0000303|PubMed:14702039}.
/FTId=VSP_053990.
VARIANT 241 241 M -> MWSVLQ (in MRT41; loss of
localization to F-actin-rich regions;
cytoplasmic accumulation at irregular
perinuclear sites).
{ECO:0000269|PubMed:24239382}.
/FTId=VAR_070974.
CONFLICT 26 26 S -> N (in Ref. 1; AAD39358/AAF98790).
{ECO:0000305}.
CONFLICT 121 121 P -> T (in Ref. 1; AAD39358/AAF98790).
{ECO:0000305}.
CONFLICT 124 124 E -> V (in Ref. 1; AAD39358/AAF98790).
{ECO:0000305}.
CONFLICT 128 128 D -> V (in Ref. 1; AAD39358/AAF98790).
{ECO:0000305}.
SEQUENCE 436 AA; 48080 MW; 128C0D87C0850E8E CRC64;
MMGEAAVAAG PCPLREDSFT RFSSQSNVYG LAGGAGGRGE LLAATLKGKV LGFRYQDLRQ
KIRPVAKELQ FNYIPVDAEI VSIDTFNKSP PKRGLVVGIT FIKDSGDKGS PFLNIYCDYE
PGSEYNLDSI AQSCLNLELQ FTPFQLCHAE VQVGDQLETV FLLSGNDPAI HLYKENEGLH
QFEEQPVENL FPELTNLTSS VLWLDVHNFP GTSRRLSALG CQSGYVRVAH VDQRSREVLQ
MWSVLQDGPI SRVIVFSLSA AKETKDRPLQ DEYSVLVASM LEPAVVYRDL LNRGLEDQLL
LPGSDQFDSV LCSLVTDVDL DGRPEVLVAT YGQELLCYKY RGPESGLPEA QHGFHLLWQR
SFSSPLLAMA HVDLTGDGLQ ELAVVSLKGV HILQHSLIQA SELVLTRLRH QVEQRRRRLQ
GLEDGAGAGP AENAAS


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