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Keratin, type II cytoskeletal 79 (Cytokeratin-79) (CK-79) (Keratin-6-like) (Keratin-6L) (Keratin-79) (K79) (Type-II keratin Kb38)

 K2C79_HUMAN             Reviewed;         535 AA.
Q5XKE5; Q6P465; Q7Z793;
15-JAN-2008, integrated into UniProtKB/Swiss-Prot.
18-MAY-2010, sequence version 2.
23-MAY-2018, entry version 118.
RecName: Full=Keratin, type II cytoskeletal 79;
AltName: Full=Cytokeratin-79;
Short=CK-79;
AltName: Full=Keratin-6-like;
Short=Keratin-6L;
AltName: Full=Keratin-79;
Short=K79;
AltName: Full=Type-II keratin Kb38;
Name=KRT79; Synonyms=K6L, KB38, KRT6L;
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606;
[1]
NUCLEOTIDE SEQUENCE [MRNA], AND TISSUE SPECIFICITY.
TISSUE=Skin;
PubMed=15737194; DOI=10.1111/j.0022-202X.2004.23530.x;
Rogers M.A., Edler L., Winter H., Langbein L., Beckmann I.,
Schweizer J.;
"Characterization of new members of the human type II keratin gene
family and a general evaluation of the keratin gene domain on
chromosome 12q13.13.";
J. Invest. Dermatol. 124:536-544(2005).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=16541075; DOI=10.1038/nature04569;
Scherer S.E., Muzny D.M., Buhay C.J., Chen R., Cree A., Ding Y.,
Dugan-Rocha S., Gill R., Gunaratne P., Harris R.A., Hawes A.C.,
Hernandez J., Hodgson A.V., Hume J., Jackson A., Khan Z.M.,
Kovar-Smith C., Lewis L.R., Lozado R.J., Metzker M.L.,
Milosavljevic A., Miner G.R., Montgomery K.T., Morgan M.B.,
Nazareth L.V., Scott G., Sodergren E., Song X.-Z., Steffen D.,
Lovering R.C., Wheeler D.A., Worley K.C., Yuan Y., Zhang Z.,
Adams C.Q., Ansari-Lari M.A., Ayele M., Brown M.J., Chen G., Chen Z.,
Clerc-Blankenburg K.P., Davis C., Delgado O., Dinh H.H., Draper H.,
Gonzalez-Garay M.L., Havlak P., Jackson L.R., Jacob L.S., Kelly S.H.,
Li L., Li Z., Liu J., Liu W., Lu J., Maheshwari M., Nguyen B.-V.,
Okwuonu G.O., Pasternak S., Perez L.M., Plopper F.J.H., Santibanez J.,
Shen H., Tabor P.E., Verduzco D., Waldron L., Wang Q., Williams G.A.,
Zhang J., Zhou J., Allen C.C., Amin A.G., Anyalebechi V., Bailey M.,
Barbaria J.A., Bimage K.E., Bryant N.P., Burch P.E., Burkett C.E.,
Burrell K.L., Calderon E., Cardenas V., Carter K., Casias K.,
Cavazos I., Cavazos S.R., Ceasar H., Chacko J., Chan S.N., Chavez D.,
Christopoulos C., Chu J., Cockrell R., Cox C.D., Dang M.,
Dathorne S.R., David R., Davis C.M., Davy-Carroll L., Deshazo D.R.,
Donlin J.E., D'Souza L., Eaves K.A., Egan A., Emery-Cohen A.J.,
Escotto M., Flagg N., Forbes L.D., Gabisi A.M., Garza M., Hamilton C.,
Henderson N., Hernandez O., Hines S., Hogues M.E., Huang M.,
Idlebird D.G., Johnson R., Jolivet A., Jones S., Kagan R., King L.M.,
Leal B., Lebow H., Lee S., LeVan J.M., Lewis L.C., London P.,
Lorensuhewa L.M., Loulseged H., Lovett D.A., Lucier A., Lucier R.L.,
Ma J., Madu R.C., Mapua P., Martindale A.D., Martinez E., Massey E.,
Mawhiney S., Meador M.G., Mendez S., Mercado C., Mercado I.C.,
Merritt C.E., Miner Z.L., Minja E., Mitchell T., Mohabbat F.,
Mohabbat K., Montgomery B., Moore N., Morris S., Munidasa M.,
Ngo R.N., Nguyen N.B., Nickerson E., Nwaokelemeh O.O., Nwokenkwo S.,
Obregon M., Oguh M., Oragunye N., Oviedo R.J., Parish B.J.,
Parker D.N., Parrish J., Parks K.L., Paul H.A., Payton B.A., Perez A.,
Perrin W., Pickens A., Primus E.L., Pu L.-L., Puazo M., Quiles M.M.,
Quiroz J.B., Rabata D., Reeves K., Ruiz S.J., Shao H., Sisson I.,
Sonaike T., Sorelle R.P., Sutton A.E., Svatek A.F., Svetz L.A.,
Tamerisa K.S., Taylor T.R., Teague B., Thomas N., Thorn R.D.,
Trejos Z.Y., Trevino B.K., Ukegbu O.N., Urban J.B., Vasquez L.I.,
Vera V.A., Villasana D.M., Wang L., Ward-Moore S., Warren J.T.,
Wei X., White F., Williamson A.L., Wleczyk R., Wooden H.S.,
Wooden S.H., Yen J., Yoon L., Yoon V., Zorrilla S.E., Nelson D.,
Kucherlapati R., Weinstock G., Gibbs R.A.;
"The finished DNA sequence of human chromosome 12.";
Nature 440:346-351(2006).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], AND VARIANT SER-81.
Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L.,
Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R.,
Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V.,
Hannenhalli S., Turner R., Yooseph S., Lu F., Nusskern D.R.,
Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H.,
Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G.,
Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W.,
Venter J.C.;
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], AND VARIANTS SER-81 AND
LEU-195.
TISSUE=Skin;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[5]
IDENTIFICATION.
PubMed=11683385;
Hesse M., Magin T.M., Weber K.;
"Genes for intermediate filament proteins and the draft sequence of
the human genome: novel keratin genes and a surprisingly high number
of pseudogenes related to keratin genes 8 and 18.";
J. Cell Sci. 114:2569-2575(2001).
[6]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=21269460; DOI=10.1186/1752-0509-5-17;
Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P.,
Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J.;
"Initial characterization of the human central proteome.";
BMC Syst. Biol. 5:17-17(2011).
-!- SUBUNIT: Heterotetramer of two type I and two type II keratins.
-!- INTERACTION:
A1A4E9:KRT13; NbExp=3; IntAct=EBI-2514135, EBI-10171552;
P19012:KRT15; NbExp=5; IntAct=EBI-2514135, EBI-739566;
Q7Z3Y7:KRT28; NbExp=4; IntAct=EBI-2514135, EBI-11980489;
Q15323:KRT31; NbExp=5; IntAct=EBI-2514135, EBI-948001;
Q14525:KRT33B; NbExp=5; IntAct=EBI-2514135, EBI-1049638;
O76015:KRT38; NbExp=3; IntAct=EBI-2514135, EBI-1047263;
Q8N6Y0:USHBP1; NbExp=3; IntAct=EBI-2514135, EBI-739895;
-!- TISSUE SPECIFICITY: Expressed in skeletal muscle, skin and scalp,
but not in any other tissues or organs examined.
{ECO:0000269|PubMed:15737194}.
-!- MISCELLANEOUS: There are two types of cytoskeletal and
microfibrillar keratin, I (acidic) and II (neutral to basic) (40-
55 and 56-70 kDa, respectively).
-!- SIMILARITY: Belongs to the intermediate filament family.
{ECO:0000255|PROSITE-ProRule:PRU01188}.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution-NoDerivs License
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EMBL; AJ564105; CAD91893.1; -; mRNA.
EMBL; AC107016; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; CH471054; EAW96648.1; -; Genomic_DNA.
EMBL; BC039148; AAH39148.1; -; mRNA.
EMBL; BC063648; AAH63648.1; -; mRNA.
EMBL; BK000976; DAA00403.1; -; Genomic_DNA.
CCDS; CCDS8839.1; -.
RefSeq; NP_787028.1; NM_175834.2.
UniGene; Hs.711471; -.
ProteinModelPortal; Q5XKE5; -.
SMR; Q5XKE5; -.
BioGrid; 130796; 22.
IntAct; Q5XKE5; 28.
iPTMnet; Q5XKE5; -.
PhosphoSitePlus; Q5XKE5; -.
SwissPalm; Q5XKE5; -.
BioMuta; KRT79; -.
DMDM; 296434550; -.
EPD; Q5XKE5; -.
PaxDb; Q5XKE5; -.
PeptideAtlas; Q5XKE5; -.
PRIDE; Q5XKE5; -.
Ensembl; ENST00000330553; ENSP00000328358; ENSG00000185640.
GeneID; 338785; -.
KEGG; hsa:338785; -.
UCSC; uc001sbb.4; human.
CTD; 338785; -.
EuPathDB; HostDB:ENSG00000185640.5; -.
GeneCards; KRT79; -.
H-InvDB; HIX0201906; -.
HGNC; HGNC:28930; KRT79.
HPA; HPA059347; -.
MIM; 611160; gene.
neXtProt; NX_Q5XKE5; -.
OpenTargets; ENSG00000185640; -.
PharmGKB; PA162393725; -.
eggNOG; ENOG410IEK5; Eukaryota.
eggNOG; ENOG410XUTQ; LUCA.
GeneTree; ENSGT00910000144006; -.
HOGENOM; HOG000230976; -.
HOVERGEN; HBG013015; -.
InParanoid; Q5XKE5; -.
KO; K07605; -.
OMA; HLYEMEL; -.
OrthoDB; EOG091G09KR; -.
PhylomeDB; Q5XKE5; -.
TreeFam; TF317854; -.
Reactome; R-HSA-6805567; Keratinization.
Reactome; R-HSA-6809371; Formation of the cornified envelope.
GeneWiki; KRT79; -.
GenomeRNAi; 338785; -.
PRO; PR:Q5XKE5; -.
Proteomes; UP000005640; Chromosome 12.
Bgee; ENSG00000185640; -.
CleanEx; HS_KRT79; -.
ExpressionAtlas; Q5XKE5; baseline and differential.
Genevisible; Q5XKE5; HS.
GO; GO:0005829; C:cytosol; TAS:Reactome.
GO; GO:0070062; C:extracellular exosome; HDA:UniProtKB.
GO; GO:0045095; C:keratin filament; IEA:InterPro.
GO; GO:0019899; F:enzyme binding; IPI:UniProtKB.
GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
GO; GO:0070268; P:cornification; TAS:Reactome.
GO; GO:0031424; P:keratinization; TAS:Reactome.
InterPro; IPR001664; IF.
InterPro; IPR018039; IF_conserved.
InterPro; IPR039008; IF_rod_dom.
InterPro; IPR032444; Keratin_2_head.
InterPro; IPR003054; Keratin_II.
PANTHER; PTHR23239; PTHR23239; 1.
Pfam; PF00038; Filament; 1.
Pfam; PF16208; Keratin_2_head; 2.
PRINTS; PR01276; TYPE2KERATIN.
SMART; SM01391; Filament; 1.
PROSITE; PS00226; IF_ROD_1; 1.
PROSITE; PS51842; IF_ROD_2; 1.
1: Evidence at protein level;
Coiled coil; Complete proteome; Intermediate filament; Keratin;
Polymorphism; Reference proteome.
CHAIN 1 535 Keratin, type II cytoskeletal 79.
/FTId=PRO_0000314893.
DOMAIN 142 457 IF rod. {ECO:0000255|PROSITE-
ProRule:PRU01188}.
REGION 1 141 Head.
REGION 142 177 Coil 1A.
REGION 178 198 Linker 1.
REGION 199 290 Coil 1B.
REGION 291 314 Linker 12.
REGION 315 453 Coil 2.
REGION 454 535 Tail.
SITE 395 395 Stutter.
VARIANT 81 81 L -> S (in dbSNP:rs2638497).
{ECO:0000269|PubMed:15489334,
ECO:0000269|Ref.3}.
/FTId=VAR_038113.
VARIANT 195 195 F -> L (in dbSNP:rs17855862).
{ECO:0000269|PubMed:15489334}.
/FTId=VAR_038114.
VARIANT 266 266 H -> R (in dbSNP:rs17688672).
/FTId=VAR_038115.
VARIANT 393 393 A -> V (in dbSNP:rs17688627).
/FTId=VAR_038116.
SEQUENCE 535 AA; 57836 MW; B25A71327186A1C4 CRC64;
MRSSVSRQTY STKGGFSSNS ASGGSGSQAR TSFSSVTVSR SSGSGGGAHC GPGTGGFGSR
SLYNLGGHKS ISVSVAGGAL LGRALGGFGF GSRAFMGQGA GRQTFGPACP PGGIQEVTVN
QSLLTPLHVE IDPEIQRVRT QEREQIKTLN NKFASFIDKV RFLEQQNKVL ETKWALLQEQ
GQNLGVTRNN LEPLFEAYLG SMRSTLDRLQ SERGRLDSEL RNVQDLVEDF KNKYEDEINK
HTAAENEFVV LKKDVDAAYM GRMDLHGKVG TLTQEIDFLQ QLYEMELSQV QTHVSNTNVV
LSMDNNRNLD LDSIIAEVKA QYELIAQRSR AEAEAWYQTK YEELQVTAGK HGDNLRDTKN
EIAELTRTIQ RLQGEADAAK KQCQQLQTAI AEAEQRGELA LKDAQKKLGD LDVALHQAKE
DLTRLLRDYQ ELMNVKLALD VEIATYRKLL ESEESRMSGE CPSAVSISVT GNSTTVCGGG
AASFGGGISL GGSGGATKGG FSTNVGYSTV KGGPVSAGTS ILRKTTTVKT SSQRY


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