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Kinesin-like protein KAR3 (Nuclear fusion protein)

 KAR3_YEAST              Reviewed;         729 AA.
P17119; D6W4D9;
01-AUG-1990, integrated into UniProtKB/Swiss-Prot.
01-AUG-1990, sequence version 1.
22-NOV-2017, entry version 180.
RecName: Full=Kinesin-like protein KAR3;
AltName: Full=Nuclear fusion protein;
Name=KAR3; OrderedLocusNames=YPR141C; ORFNames=P9659.16;
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast).
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces.
NCBI_TaxID=559292;
[1]
NUCLEOTIDE SEQUENCE [MRNA], AND FUNCTION.
STRAIN=MY1124;
PubMed=2138512; DOI=10.1016/0092-8674(90)90351-E;
Meluh P.B., Rose M.D.;
"KAR3, a kinesin-related gene required for yeast nuclear fusion.";
Cell 60:1029-1041(1990).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ATCC 204508 / S288c;
PubMed=9169875;
Bussey H., Storms R.K., Ahmed A., Albermann K., Allen E., Ansorge W.,
Araujo R., Aparicio A., Barrell B.G., Badcock K., Benes V.,
Botstein D., Bowman S., Brueckner M., Carpenter J., Cherry J.M.,
Chung E., Churcher C.M., Coster F., Davis K., Davis R.W.,
Dietrich F.S., Delius H., DiPaolo T., Dubois E., Duesterhoeft A.,
Duncan M., Floeth M., Fortin N., Friesen J.D., Fritz C., Goffeau A.,
Hall J., Hebling U., Heumann K., Hilbert H., Hillier L.W.,
Hunicke-Smith S., Hyman R.W., Johnston M., Kalman S., Kleine K.,
Komp C., Kurdi O., Lashkari D., Lew H., Lin A., Lin D., Louis E.J.,
Marathe R., Messenguy F., Mewes H.-W., Mirtipati S., Moestl D.,
Mueller-Auer S., Namath A., Nentwich U., Oefner P., Pearson D.,
Petel F.X., Pohl T.M., Purnelle B., Rajandream M.A., Rechmann S.,
Rieger M., Riles L., Roberts D., Schaefer M., Scharfe M., Scherens B.,
Schramm S., Schroeder M., Sdicu A.-M., Tettelin H., Urrestarazu L.A.,
Ushinsky S., Vierendeels F., Vissers S., Voss H., Walsh S.V.,
Wambutt R., Wang Y., Wedler E., Wedler H., Winnett E., Zhong W.-W.,
Zollner A., Vo D.H., Hani J.;
"The nucleotide sequence of Saccharomyces cerevisiae chromosome XVI.";
Nature 387:103-105(1997).
[3]
GENOME REANNOTATION.
STRAIN=ATCC 204508 / S288c;
PubMed=24374639; DOI=10.1534/g3.113.008995;
Engel S.R., Dietrich F.S., Fisk D.G., Binkley G., Balakrishnan R.,
Costanzo M.C., Dwight S.S., Hitz B.C., Karra K., Nash R.S., Weng S.,
Wong E.D., Lloyd P., Skrzypek M.S., Miyasato S.R., Simison M.,
Cherry J.M.;
"The reference genome sequence of Saccharomyces cerevisiae: Then and
now.";
G3 (Bethesda) 4:389-398(2014).
[4]
MUTANTS KAR3.
PubMed=8224825;
Hoyt M.A., He L., Totis L., Saunders W.S.;
"Loss of function of Saccharomyces cerevisiae kinesin-related CIN8 and
KIP1 is suppressed by KAR3 motor domain mutations.";
Genetics 135:35-44(1993).
[5]
CHARACTERIZATION.
PubMed=7912193;
Endow S.A., Kang S.J., Satterwhite L.L., Rose M.D., Skeen V.P.,
Salmon E.D.;
"Yeast Kar3 is a minus-end microtubule motor protein that destabilizes
microtubules preferentially at the minus ends.";
EMBO J. 13:2708-2713(1994).
[6]
INTERACTION WITH CIK1 AND VIK1, AND SUBCELLULAR LOCATION.
PubMed=10087265; DOI=10.1083/jcb.144.6.1219;
Manning B.D., Barrett J.G., Wallace J.A., Granok H., Snyder M.;
"Differential regulation of the Kar3p kinesin-related protein by two
associated proteins, Cik1p and Vik1p.";
J. Cell Biol. 144:1219-1233(1999).
[7]
FUNCTION, AND SUBCELLULAR LOCATION.
PubMed=11729143;
Shanks R.M.Q., Kamieniecki R.J., Dawson D.S.;
"The Kar3-interacting protein Cik1p plays a critical role in passage
through meiosis I in Saccharomyces cerevisiae.";
Genetics 159:939-951(2001).
[8]
LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
PubMed=14562106; DOI=10.1038/nature02046;
Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A.,
Dephoure N., O'Shea E.K., Weissman J.S.;
"Global analysis of protein expression in yeast.";
Nature 425:737-741(2003).
[9]
X-RAY CRYSTALLOGRAPHY (2.3 ANGSTROMS) OF 383-729.
PubMed=9485302; DOI=10.1021/bi972504o;
Gulick A.M., Song H., Endow S.A., Rayment I.;
"X-ray crystal structure of the yeast Kar3 motor domain complexed with
Mg.ADP to 2.3-A resolution.";
Biochemistry 37:1769-1776(1998).
-!- FUNCTION: Essential for yeast nuclear fusion during mating. KAR3
is a bifunctional protein having a kinesin-like motor domain
joined to a distinct microtubule binding domain. It may mediate
microtubule sliding during nuclear fusion and possibly mitosis.
May interact with spindle microtubules to produce an inwardly
directed force acting upon the poles. KAR3 function antagonizes
CIP8 and KIP1 outward force action. KAR3 motor activity is
directed toward the microtubule's minus end.
{ECO:0000269|PubMed:11729143, ECO:0000269|PubMed:2138512}.
-!- SUBUNIT: Interacts with CIK1 and VIK1.
{ECO:0000269|PubMed:10087265}.
-!- INTERACTION:
P32908:SMC1; NbExp=4; IntAct=EBI-9499, EBI-17402;
Q12045:VIK1; NbExp=4; IntAct=EBI-9499, EBI-38784;
-!- SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton, microtubule
organizing center, spindle pole body. Nucleus. Cytoplasm,
cytoskeleton. Note=Cytoplasmic microtubules.
-!- INDUCTION: By alpha factor.
-!- MISCELLANEOUS: KAR3 contains two globular domains separated by an
alpha-helical coiled coil. The N-terminal portion of KAR3 contains
a microtubule association domain distinct from the kinesin-like C-
terminal domain.
-!- MISCELLANEOUS: Present with 3250 molecules/cell in log phase SD
medium. {ECO:0000269|PubMed:14562106}.
-!- SIMILARITY: Belongs to the TRAFAC class myosin-kinesin ATPase
superfamily. Kinesin family. NCD subfamily. {ECO:0000255|PROSITE-
ProRule:PRU00283}.
-----------------------------------------------------------------------
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EMBL; M31719; AAA34715.1; -; mRNA.
EMBL; U40829; AAB68281.1; -; Genomic_DNA.
EMBL; BK006949; DAA11555.1; -; Genomic_DNA.
PIR; A34796; A34796.
RefSeq; NP_015467.1; NM_001184238.1.
PDB; 1F9T; X-ray; 1.50 A; A=372-729.
PDB; 1F9U; X-ray; 1.70 A; A=383-729.
PDB; 1F9V; X-ray; 1.30 A; A=383-729.
PDB; 1F9W; X-ray; 2.50 A; A/B=383-729.
PDB; 3KAR; X-ray; 2.30 A; A=385-729.
PDB; 4ETP; X-ray; 2.30 A; A=348-729.
PDBsum; 1F9T; -.
PDBsum; 1F9U; -.
PDBsum; 1F9V; -.
PDBsum; 1F9W; -.
PDBsum; 3KAR; -.
PDBsum; 4ETP; -.
ProteinModelPortal; P17119; -.
SMR; P17119; -.
BioGrid; 36310; 580.
DIP; DIP-75N; -.
IntAct; P17119; 8.
MINT; MINT-435688; -.
STRING; 4932.YPR141C; -.
iPTMnet; P17119; -.
MaxQB; P17119; -.
PRIDE; P17119; -.
EnsemblFungi; YPR141C; YPR141C; YPR141C.
GeneID; 856263; -.
KEGG; sce:YPR141C; -.
EuPathDB; FungiDB:YPR141C; -.
SGD; S000006345; KAR3.
GeneTree; ENSGT00550000074610; -.
HOGENOM; HOG000116164; -.
InParanoid; P17119; -.
KO; K10405; -.
OMA; NSIMDYK; -.
OrthoDB; EOG092C2D4G; -.
BioCyc; YEAST:G3O-34276-MONOMER; -.
BRENDA; 3.6.4.5; 984.
EvolutionaryTrace; P17119; -.
PRO; PR:P17119; -.
Proteomes; UP000002311; Chromosome XVI.
GO; GO:0005881; C:cytoplasmic microtubule; IDA:SGD.
GO; GO:0005871; C:kinesin complex; IBA:GO_Central.
GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO; GO:0005816; C:spindle pole body; IDA:SGD.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0008569; F:ATP-dependent microtubule motor activity, minus-end-directed; IDA:SGD.
GO; GO:0008017; F:microtubule binding; IDA:SGD.
GO; GO:0046982; F:protein heterodimerization activity; IPI:SGD.
GO; GO:0051301; P:cell division; IEA:UniProtKB-KW.
GO; GO:0000742; P:karyogamy involved in conjugation with cellular fusion; IMP:SGD.
GO; GO:0051321; P:meiotic cell cycle; IDA:SGD.
GO; GO:0000278; P:mitotic cell cycle; IGI:SGD.
GO; GO:0007064; P:mitotic sister chromatid cohesion; IMP:SGD.
GO; GO:0000743; P:nuclear migration involved in conjugation with cellular fusion; IMP:SGD.
GO; GO:0060236; P:regulation of mitotic spindle organization; IMP:SGD.
Gene3D; 3.40.850.10; -; 1.
InterPro; IPR027640; Kinesin-like_fam.
InterPro; IPR019821; Kinesin_motor_CS.
InterPro; IPR001752; Kinesin_motor_dom.
InterPro; IPR036961; Kinesin_motor_dom_sf.
InterPro; IPR027417; P-loop_NTPase.
PANTHER; PTHR24115; PTHR24115; 1.
Pfam; PF00225; Kinesin; 1.
PRINTS; PR00380; KINESINHEAVY.
SMART; SM00129; KISc; 1.
SUPFAM; SSF52540; SSF52540; 1.
PROSITE; PS00411; KINESIN_MOTOR_1; 1.
PROSITE; PS50067; KINESIN_MOTOR_2; 1.
1: Evidence at protein level;
3D-structure; ATP-binding; Cell cycle; Cell division; Coiled coil;
Complete proteome; Cytoplasm; Cytoskeleton; Karyogamy; Microtubule;
Motor protein; Nucleotide-binding; Nucleus; Reference proteome.
CHAIN 1 729 Kinesin-like protein KAR3.
/FTId=PRO_0000125391.
DOMAIN 386 723 Kinesin motor. {ECO:0000255|PROSITE-
ProRule:PRU00283}.
NP_BIND 474 481 ATP. {ECO:0000255|PROSITE-
ProRule:PRU00283}.
REGION 1 109 Globular.
COILED 110 357 {ECO:0000255}.
VARIANT 378 378 N -> K (in KAR3-894).
VARIANT 462 462 S -> L (in KAR3-891).
VARIANT 521 521 E -> D (in KAR3-893).
VARIANT 550 550 R -> S (in KAR3-899).
VARIANT 558 558 T -> A (in KAR3-8912).
VARIANT 650 650 N -> K (in KAR3-898).
VARIANT 659 659 V -> L (in KAR3-897).
MUTAGEN 479 479 G->E: Poisons nuclear fusion.
HELIX 331 338 {ECO:0000244|PDB:4ETP}.
HELIX 340 384 {ECO:0000244|PDB:4ETP}.
STRAND 386 393 {ECO:0000244|PDB:1F9V}.
TURN 398 400 {ECO:0000244|PDB:1F9V}.
STRAND 406 410 {ECO:0000244|PDB:1F9V}.
TURN 415 418 {ECO:0000244|PDB:1F9V}.
STRAND 419 426 {ECO:0000244|PDB:1F9V}.
HELIX 427 429 {ECO:0000244|PDB:1F9V}.
STRAND 433 442 {ECO:0000244|PDB:1F9V}.
HELIX 448 459 {ECO:0000244|PDB:1F9V}.
HELIX 460 464 {ECO:0000244|PDB:1F9V}.
STRAND 468 473 {ECO:0000244|PDB:1F9V}.
HELIX 480 485 {ECO:0000244|PDB:1F9V}.
TURN 487 489 {ECO:0000244|PDB:1F9V}.
HELIX 491 506 {ECO:0000244|PDB:1F9V}.
HELIX 507 509 {ECO:0000244|PDB:1F9V}.
STRAND 512 523 {ECO:0000244|PDB:1F9V}.
STRAND 526 529 {ECO:0000244|PDB:1F9V}.
STRAND 549 552 {ECO:0000244|PDB:1F9V}.
TURN 553 556 {ECO:0000244|PDB:1F9V}.
STRAND 557 560 {ECO:0000244|PDB:1F9V}.
STRAND 566 570 {ECO:0000244|PDB:3KAR}.
HELIX 571 573 {ECO:0000244|PDB:1F9V}.
HELIX 574 581 {ECO:0000244|PDB:1F9V}.
HELIX 596 598 {ECO:0000244|PDB:1F9V}.
STRAND 599 610 {ECO:0000244|PDB:1F9V}.
TURN 612 614 {ECO:0000244|PDB:1F9U}.
STRAND 617 626 {ECO:0000244|PDB:1F9V}.
HELIX 635 637 {ECO:0000244|PDB:1F9V}.
HELIX 640 663 {ECO:0000244|PDB:1F9V}.
TURN 668 670 {ECO:0000244|PDB:4ETP}.
HELIX 675 677 {ECO:0000244|PDB:1F9V}.
HELIX 679 688 {ECO:0000244|PDB:1F9V}.
STRAND 693 700 {ECO:0000244|PDB:1F9V}.
HELIX 704 706 {ECO:0000244|PDB:1F9V}.
HELIX 707 720 {ECO:0000244|PDB:1F9V}.
TURN 723 725 {ECO:0000244|PDB:1F9V}.
SEQUENCE 729 AA; 84004 MW; BAEF98BC783ABDB9 CRC64;
MESLPRTPTK GRSTQHLSTP SPKNDILAMN GHKRRNTTTP PPKHTLLKPQ RTDIHRHSLA
SQSRISMSPN RELLKNYKGT ANLIYGNQKS NSGVTSFYKE NVNELNRTQA ILFEKKATLD
LLKDELTETK EKINAVNLKF ETLREEKIKI EQQLNLKNNE LISIKEEFLS KKQFMNEGHE
IHLKQLAASN KKELKQMENE YKTKIEKLKF MKIKQFENER ASLLDKIEEV RNKITMNPST
LQEMLNDVEQ KHMLEKEEWL TEYQSQWKKD IELNNKHMQE IESIKKEIEN TLKPELAEKK
KLLTEKRNAY EAIKVKVKEK EEETTRLRDE VALKQKTNLE TLEKIKELEE YIKDTELGMK
ELNEILIKEE TVRRTLHNEL QELRGNIRVY CRIRPALKNL ENSDTSLINV NEFDDNSGVQ
SMEVTKIQNT AQVHEFKFDK IFDQQDTNVD VFKEVGQLVQ SSLDGYNVCI FAYGQTGSGK
TFTMLNPGDG IIPSTISHIF NWINKLKTKG WDYKVNCEFI EIYNENIVDL LRSDNNNKED
TSIGLKHEIR HDQETKTTTI TNVTSCKLES EEMVEIILKK ANKLRSTAST ASNEHSSRSH
SIFIIHLSGS NAKTGAHSYG TLNLVDLAGS ERINVSQVVG DRLRETQNIN KSLSCLGDVI
HALGQPDSTK RHIPFRNSKL TYLLQYSLTG DSKTLMFVNI SPSSSHINET LNSLRFASKV
NSTRLVSRK


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