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LD02225p (LD05703p) (Utx histone demethylase, isoform A)

 Q9VL07_DROME            Unreviewed;      1136 AA.
Q9VL07; Q8MQK3; Q9VL08;
01-MAY-2000, integrated into UniProtKB/TrEMBL.
05-JUL-2004, sequence version 3.
22-NOV-2017, entry version 155.
SubName: Full=LD02225p {ECO:0000313|EMBL:AAQ22558.1};
SubName: Full=LD05703p {ECO:0000313|EMBL:AAM76179.1};
SubName: Full=Utx histone demethylase, isoform A {ECO:0000313|EMBL:AAF52897.3};
Name=Utx {ECO:0000313|EMBL:AAF52897.3,
ECO:0000313|FlyBase:FBgn0260749};
Synonyms=anon-31BCa {ECO:0000313|EMBL:AAF52897.3},
Dmel\CG5640 {ECO:0000313|EMBL:AAF52897.3},
dUTX {ECO:0000313|EMBL:AAF52897.3},
dUtx {ECO:0000313|EMBL:AAF52897.3}, UTX {ECO:0000313|EMBL:AAF52897.3},
utx {ECO:0000313|EMBL:AAF52897.3};
ORFNames=CG5640 {ECO:0000313|EMBL:AAF52897.3,
ECO:0000313|FlyBase:FBgn0260749},
Dmel_CG5640 {ECO:0000313|EMBL:AAF52897.3};
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227 {ECO:0000313|EMBL:AAF52897.3, ECO:0000313|Proteomes:UP000000803};
[1] {ECO:0000313|EMBL:AAF52897.3, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L.,
Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J.,
Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O.,
Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[2] {ECO:0000313|EMBL:AAF52897.3, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537568;
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
"Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence.";
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002).
[3] {ECO:0000313|EMBL:AAF52897.3, ECO:0000313|Proteomes:UP000000803}
GENOME REANNOTATION.
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[4] {ECO:0000313|EMBL:AAF52897.3, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537573;
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M.,
Ashburner M., Celniker S.E.;
"The transposable elements of the Drosophila melanogaster euchromatin:
a genomics perspective.";
Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002).
[5] {ECO:0000313|EMBL:AAF52897.3, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537574;
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
Karpen G.H.;
"Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly.";
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002).
[6] {ECO:0000313|EMBL:AAM76179.1}
NUCLEOTIDE SEQUENCE.
STRAIN=Berkeley {ECO:0000313|EMBL:AAM76179.1};
Stapleton M., Brokstein P., Hong L., Agbayani A., Carlson J.,
Champe M., Chavez C., Dorsett V., Dresnek D., Farfan D., Frise E.,
George R., Gonzalez M., Guarin H., Kronmiller B., Li P., Liao G.,
Miranda A., Mungall C.J., Nunoo J., Pacleb J., Paragas V., Park S.,
Patel S., Phouanenavong S., Wan K., Yu C., Lewis S.E., Rubin G.M.,
Celniker S.;
Submitted (JUL-2002) to the EMBL/GenBank/DDBJ databases.
[7] {ECO:0000313|EMBL:AAQ22558.1}
NUCLEOTIDE SEQUENCE.
STRAIN=Berkeley {ECO:0000313|EMBL:AAQ22558.1};
Stapleton M., Brokstein P., Hong L., Agbayani A., Carlson J.,
Champe M., Chavez C., Dorsett V., Dresnek D., Farfan D., Frise E.,
George R., Gonzalez M., Guarin H., Kronmiller B., Li P., Liao G.,
Miranda A., Mungall C.J., Nunoo J., Pacleb J., Paragas V., Park S.,
Patel S., Phouanenavong S., Wan K., Yu C., Lewis S.E., Rubin G.M.,
Celniker S.;
Submitted (AUG-2003) to the EMBL/GenBank/DDBJ databases.
[8] {ECO:0000313|EMBL:AAF52897.3, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=16110336; DOI=10.1371/journal.pcbi.0010022;
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
Ashburner M., Anxolabehere D.;
"Combined evidence annotation of transposable elements in genome
sequences.";
PLoS Comput. Biol. 1:166-175(2005).
[9] {ECO:0000313|EMBL:AAF52897.3}
NUCLEOTIDE SEQUENCE.
O'Boyle S.T.;
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
[10] {ECO:0000313|EMBL:AAF52897.3}
NUCLEOTIDE SEQUENCE.
Berkeley Drosophila Genome Project;
Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R.,
Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E.,
Yu C., Rubin G.;
"Drosophila melanogaster release 4 sequence.";
Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases.
[11] {ECO:0000313|EMBL:AAF52897.3, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569856; DOI=10.1126/science.1139815;
Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
"The Release 5.1 annotation of Drosophila melanogaster
heterochromatin.";
Science 316:1586-1591(2007).
[12] {ECO:0000313|EMBL:AAF52897.3, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569867; DOI=10.1126/science.1139816;
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
Dimitri P., Karpen G.H., Celniker S.E.;
"Sequence finishing and mapping of Drosophila melanogaster
heterochromatin.";
Science 316:1625-1628(2007).
[13] {ECO:0000313|EMBL:AAF52897.3}
NUCLEOTIDE SEQUENCE.
FlyBase;
Submitted (DEC-2016) to the EMBL/GenBank/DDBJ databases.
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EMBL; AE014134; AAF52897.3; -; Genomic_DNA.
EMBL; AY129437; AAM76179.1; -; mRNA.
EMBL; BT010089; AAQ22558.1; -; mRNA.
RefSeq; NP_609368.3; NM_135524.4.
UniGene; Dm.11404; -.
MINT; MINT-797721; -.
STRING; 7227.FBpp0079664; -.
EnsemblMetazoa; FBtr0080075; FBpp0079664; FBgn0260749.
GeneID; 34377; -.
UCSC; CG5640-RA; d. melanogaster.
CTD; 34377; -.
FlyBase; FBgn0260749; Utx.
eggNOG; KOG1124; Eukaryota.
eggNOG; KOG1246; Eukaryota.
eggNOG; COG0457; LUCA.
GeneTree; ENSGT00410000025758; -.
OMA; NHVHQVT; -.
OrthoDB; EOG091G0OL6; -.
Reactome; R-DME-2559580; Oxidative Stress Induced Senescence.
Reactome; R-DME-3214842; HDMs demethylate histones.
GenomeRNAi; 34377; -.
Proteomes; UP000000803; Chromosome 2L.
Bgee; FBgn0260749; -.
GO; GO:0044666; C:MLL3/4 complex; IDA:FlyBase.
GO; GO:0005634; C:nucleus; IDA:FlyBase.
GO; GO:0005700; C:polytene chromosome; IDA:FlyBase.
GO; GO:0005705; C:polytene chromosome interband; IDA:FlyBase.
GO; GO:0001047; F:core promoter binding; IDA:FlyBase.
GO; GO:0032452; F:histone demethylase activity; IDA:FlyBase.
GO; GO:0071558; F:histone demethylase activity (H3-K27 specific); IDA:FlyBase.
GO; GO:0046872; F:metal ion binding; IEA:InterPro.
GO; GO:0008168; F:methyltransferase activity; IEA:UniProtKB-KW.
GO; GO:0071390; P:cellular response to ecdysone; IMP:FlyBase.
GO; GO:0071480; P:cellular response to gamma radiation; IMP:FlyBase.
GO; GO:0035072; P:ecdysone-mediated induction of salivary gland cell autophagic cell death; IMP:FlyBase.
GO; GO:0016577; P:histone demethylation; IDA:FlyBase.
GO; GO:0071557; P:histone H3-K27 demethylation; IMP:FlyBase.
GO; GO:0051568; P:histone H3-K4 methylation; IDA:FlyBase.
GO; GO:0035078; P:induction of programmed cell death by ecdysone; IMP:FlyBase.
GO; GO:0008285; P:negative regulation of cell proliferation; IMP:FlyBase.
GO; GO:0061086; P:negative regulation of histone H3-K27 methylation; IMP:FlyBase.
GO; GO:1902465; P:negative regulation of histone H3-K27 trimethylation; IMP:FlyBase.
GO; GO:0045746; P:negative regulation of Notch signaling pathway; IGI:FlyBase.
GO; GO:0010508; P:positive regulation of autophagy; IMP:FlyBase.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IMP:FlyBase.
GO; GO:1990248; P:regulation of transcription from RNA polymerase II promoter in response to DNA damage; IMP:FlyBase.
GO; GO:0045498; P:sex comb development; IMP:FlyBase.
GO; GO:0042060; P:wound healing; IMP:FlyBase.
Gene3D; 1.25.40.10; -; 4.
InterPro; IPR003347; JmjC_dom.
InterPro; IPR029516; KDM6C.
InterPro; IPR013026; TPR-contain_dom.
InterPro; IPR011990; TPR-like_helical_dom_sf.
InterPro; IPR019734; TPR_repeat.
PANTHER; PTHR14017:SF9; PTHR14017:SF9; 2.
Pfam; PF02373; JmjC; 1.
Pfam; PF13181; TPR_8; 1.
SMART; SM00558; JmjC; 1.
SMART; SM00028; TPR; 7.
SUPFAM; SSF48452; SSF48452; 2.
PROSITE; PS51184; JMJC; 1.
PROSITE; PS50005; TPR; 6.
PROSITE; PS50293; TPR_REGION; 1.
2: Evidence at transcript level;
Complete proteome {ECO:0000313|Proteomes:UP000000803};
Methyltransferase {ECO:0000313|EMBL:AAF52897.3};
Reference proteome {ECO:0000313|Proteomes:UP000000803};
TPR repeat {ECO:0000256|PROSITE-ProRule:PRU00339};
Transferase {ECO:0000313|EMBL:AAF52897.3}.
DOMAIN 114 407 TPR_REGION.
{ECO:0000259|PROSITE:PS50293}.
REPEAT 114 147 TPR. {ECO:0000256|PROSITE-
ProRule:PRU00339}.
REPEAT 152 185 TPR. {ECO:0000256|PROSITE-
ProRule:PRU00339}.
REPEAT 189 222 TPR. {ECO:0000256|PROSITE-
ProRule:PRU00339}.
REPEAT 306 339 TPR. {ECO:0000256|PROSITE-
ProRule:PRU00339}.
REPEAT 340 373 TPR. {ECO:0000256|PROSITE-
ProRule:PRU00339}.
REPEAT 374 407 TPR. {ECO:0000256|PROSITE-
ProRule:PRU00339}.
DOMAIN 832 995 JmjC. {ECO:0000259|PROSITE:PS51184}.
SEQUENCE 1136 AA; 129340 MW; 3C3D0DD0D8D1B069 CRC64;
MGQLTFEDDC LIRELDSRYY GFLDLSNSKN AELRNLVQQT ITNLQNYIAN GQVHESKNSS
DNKNAIQKFE PSTQAGEHME NTSSRNNDDT KPFEQDAKEK VSIIEEKHQD EHYVNALCKL
GHLHLLLGEY SEALSAYQKY LRFRENNYWT NHAFIYGIGV AYFKLRCFKW AIKSFQELLY
LSPNFTCANE VHLRLGLMLK HCGEFHIALK HLQLALLYTY PSTFSELQVK FQIAHLYEVQ
NKHKAAKDGY EFLLNEKNIS LELKADVYRQ LGWMYHCVEC LGEKKEREAN ALNFLQKSIE
ADPKSGQSLY LLGRCYAGIN KVHDAFLAYR NSVEKSEGNA DTWCSIGVLY QQQNQPTDAL
QAYICAVQLD KDHKAAWTNL GILYESCGQL RDAYACYLNA TKQISFQKSS LIRKKQAIRM
KKDTIGLSKG LSQRITFLEG QLSQAPLPSI TSKRRQLCSI EEAWNLPISL EMNSRQQQTA
QMLPRQVTKQ SPVQGPPPPY PHSQLSQSPI PSKRIKEDGT SQQEVTQNNS QTSAQNLINI
SESLNQRNFN AMPESNKSSE QSVLDTFDDI SNDIYKQNES IKLERLSQDA LSNNEDSRHD
FIGGDNADIS TTFKIQMDSK QLMVAVKLLP IDEPPVHCTI LQVNAPPPSP PDCPPQKLTR
DQLLPPTPSV HLENKKHAFS PQLQEFCLKH PIAVVRGLAG VLKLDLGLFS TKTLVEANPD
HSVEVRTQVH QSPDENWDTS QGKRVWACIS HRSHTTIAKY AQYQASSFQD SLKLILPQDE
SDKGFPGSQA MSDSDSKDSV SNSNIVLKRK KHKINSKMLR FGTNVDLSDE KKWKPQLTEL
QKLPAFARVI SAANMLSHVG HVILGMNTVQ LYMKVPGSRT PGHQENNNFC SININIGPGD
CEWFAVPDAY WGGVHNLCEK NNISYLHGSW WPVLEDLYKE NIPVYRFIQK PGDLVWVNAG
CVHWVQSIGW CNNIAWNVGP LTARQYSLAI ERYEWNKVQA FKSIVPMVHL SWNLARNIKV
SDTKLFELIK MCLLQTLKNV LHIQEYVKSK GVEIRFNGRG KNEASHYCGQ CEVEVFNVLF
IKEQEKRHVV HCLSCALKLS PSLQGIVCLE EYRLSELQRV YDSFTLHRTQ GLAYTQ


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