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LD28763p (PDGF-and VEGF-related factor 1, isoform A) (VEGF2-A ligand long isoform)

 Q9VWP6_DROME            Unreviewed;       325 AA.
Q9VWP6; Q960Z8;
01-MAY-2000, integrated into UniProtKB/TrEMBL.
01-OCT-2002, sequence version 3.
12-SEP-2018, entry version 166.
SubName: Full=LD28763p {ECO:0000313|EMBL:AAK93175.1};
SubName: Full=PDGF-and VEGF-related factor 1, isoform A {ECO:0000313|EMBL:AAF48892.3};
SubName: Full=VEGF2-A ligand long isoform {ECO:0000313|EMBL:AAL91093.1};
Name=Pvf1 {ECO:0000313|EMBL:AAF48892.3,
ECO:0000313|FlyBase:FBgn0030964};
Synonyms=Dmel\CG7103 {ECO:0000313|EMBL:AAF48892.3},
DmVEGF-1 {ECO:0000313|EMBL:AAF48892.3},
EP1624 {ECO:0000313|EMBL:AAF48892.3},
l(1)G0146 {ECO:0000313|EMBL:AAF48892.3},
PVF {ECO:0000313|EMBL:AAF48892.3}, Pvf {ECO:0000313|EMBL:AAF48892.3},
Pvf-1 {ECO:0000313|EMBL:AAF48892.3},
PVF1 {ECO:0000313|EMBL:AAF48892.3},
pvf1 {ECO:0000313|EMBL:AAF48892.3},
PVFs {ECO:0000313|EMBL:AAF48892.3},
VEGF {ECO:0000313|EMBL:AAF48892.3},
vegf1 {ECO:0000313|EMBL:AAF48892.3},
Vegf17E {ECO:0000313|EMBL:AAF48892.3},
Vegf17e-a {ECO:0000313|EMBL:AAF48892.3},
Vegf17e-b {ECO:0000313|EMBL:AAF48892.3},
VEGF2-B {ECO:0000313|EMBL:AAF48892.3};
ORFNames=CG7103 {ECO:0000313|EMBL:AAF48892.3,
ECO:0000313|FlyBase:FBgn0030964},
Dmel_CG7103 {ECO:0000313|EMBL:AAF48892.3};
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227 {ECO:0000313|EMBL:AAF48892.3, ECO:0000313|Proteomes:UP000000803};
[1] {ECO:0000313|EMBL:AAF48892.3, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L.,
Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J.,
Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O.,
Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[2] {ECO:0000313|EMBL:AAK93175.1}
NUCLEOTIDE SEQUENCE.
STRAIN=Berkeley {ECO:0000313|EMBL:AAK93175.1};
Stapleton M., Brokstein P., Hong L., Agbayani A., Carlson J.,
Champe M., Chavez C., Dorsett V., Farfan D., Frise E., George R.,
Gonzalez M., Guarin H., Li P., Liao G., Miranda A., Mungall C.J.,
Nunoo J., Pacleb J., Paragas V., Park S., Phouanenavong S., Wan K.,
Yu C., Lewis S.E., Rubin G.M., Celniker S.;
Submitted (AUG-2001) to the EMBL/GenBank/DDBJ databases.
[3] {ECO:0000313|EMBL:AAL91093.1}
NUCLEOTIDE SEQUENCE.
PubMed=11955438; DOI=10.1016/S0092-8674(02)00676-1;
Cho N.K., Keyes L., Johnson E., Heller J., Ryner L., Karim F.,
Krasnow M.A.;
"Developmental control of blood cell migration by the Drosophila VEGF
pathway.";
Cell 108:865-876(2002).
[4] {ECO:0000313|EMBL:AAF48892.3, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537568;
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
"Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence.";
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002).
[5] {ECO:0000313|EMBL:AAF48892.3, ECO:0000313|Proteomes:UP000000803}
GENOME REANNOTATION.
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[6] {ECO:0000313|EMBL:AAF48892.3, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537573;
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M.,
Ashburner M., Celniker S.E.;
"The transposable elements of the Drosophila melanogaster euchromatin:
a genomics perspective.";
Genome Biol. 3:RESEARCH0084-RESEARCH0084(2002).
[7] {ECO:0000313|EMBL:AAF48892.3, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537574;
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
Karpen G.H.;
"Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly.";
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002).
[8] {ECO:0000313|EMBL:AAL91093.1}
NUCLEOTIDE SEQUENCE.
Carroll S., Ryner L., Karim F.D.;
Submitted (FEB-2002) to the EMBL/GenBank/DDBJ databases.
[9] {ECO:0000313|EMBL:AAF48892.3, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=16110336; DOI=10.1371/journal.pcbi.0010022;
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
Ashburner M., Anxolabehere D.;
"Combined evidence annotation of transposable elements in genome
sequences.";
PLoS Comput. Biol. 1:166-175(2005).
[10] {ECO:0000313|EMBL:AAF48892.3}
NUCLEOTIDE SEQUENCE.
Berkeley Drosophila Genome Project;
Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R.,
Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E.,
Yu C., Rubin G.;
"Drosophila melanogaster release 4 sequence.";
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
[11] {ECO:0000313|EMBL:AAF48892.3}
NUCLEOTIDE SEQUENCE.
O'Boyle S.T.;
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
[12] {ECO:0000313|EMBL:AAF48892.3, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569856; DOI=10.1126/science.1139815;
Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
"The Release 5.1 annotation of Drosophila melanogaster
heterochromatin.";
Science 316:1586-1591(2007).
[13] {ECO:0000313|EMBL:AAF48892.3, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569867; DOI=10.1126/science.1139816;
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
Dimitri P., Karpen G.H., Celniker S.E.;
"Sequence finishing and mapping of Drosophila melanogaster
heterochromatin.";
Science 316:1625-1628(2007).
[14] {ECO:0000313|EMBL:AAF48892.3}
NUCLEOTIDE SEQUENCE.
FlyBase;
Submitted (MAY-2018) to the EMBL/GenBank/DDBJ databases.
-!- SIMILARITY: Belongs to the PDGF/VEGF growth factor family.
{ECO:0000256|RuleBase:RU003818}.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution (CC BY 4.0) License
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EMBL; AE014298; AAF48892.3; -; Genomic_DNA.
EMBL; AY051751; AAK93175.1; -; mRNA.
EMBL; AY079188; AAL91093.1; -; mRNA.
RefSeq; NP_523407.1; NM_078683.3.
UniGene; Dm.4697; -.
IntAct; Q9VWP6; 3.
STRING; 7227.FBpp0074411; -.
EnsemblMetazoa; FBtr0074640; FBpp0074411; FBgn0030964.
GeneID; 32876; -.
UCSC; CG7103-RA; d. melanogaster.
CTD; 32876; -.
FlyBase; FBgn0030964; Pvf1.
eggNOG; ENOG410IZ3Q; Eukaryota.
eggNOG; ENOG4111RWK; LUCA.
OrthoDB; EOG091G0ZSH; -.
GenomeRNAi; 32876; -.
Proteomes; UP000000803; Chromosome X.
Bgee; FBgn0030964; Expressed in 35 organ(s), highest expression level in spermathecum.
GO; GO:0005737; C:cytoplasm; IDA:FlyBase.
GO; GO:0005576; C:extracellular region; ISS:FlyBase.
GO; GO:0005615; C:extracellular space; IBA:GO_Central.
GO; GO:0016020; C:membrane; IEA:InterPro.
GO; GO:0008083; F:growth factor activity; IEA:UniProtKB-KW.
GO; GO:0070851; F:growth factor receptor binding; IBA:GO_Central.
GO; GO:0008201; F:heparin binding; IDA:FlyBase.
GO; GO:0005102; F:signaling receptor binding; IPI:FlyBase.
GO; GO:0005172; F:vascular endothelial growth factor receptor binding; ISS:FlyBase.
GO; GO:0061327; P:anterior Malpighian tubule development; IMP:FlyBase.
GO; GO:0007298; P:border follicle cell migration; IMP:FlyBase.
GO; GO:0030031; P:cell projection assembly; IMP:FlyBase.
GO; GO:0035099; P:hemocyte migration; IGI:FlyBase.
GO; GO:0007443; P:Malpighian tubule morphogenesis; IMP:FlyBase.
GO; GO:0060548; P:negative regulation of cell death; IMP:FlyBase.
GO; GO:0008284; P:positive regulation of cell proliferation; IBA:GO_Central.
GO; GO:0031954; P:positive regulation of protein autophosphorylation; IBA:GO_Central.
GO; GO:2000683; P:regulation of cellular response to X-ray; IMP:FlyBase.
GO; GO:0007435; P:salivary gland morphogenesis; IMP:FlyBase.
GO; GO:0048010; P:vascular endothelial growth factor receptor signaling pathway; ISS:FlyBase.
CDD; cd00135; PDGF; 1.
Gene3D; 2.10.90.10; -; 1.
InterPro; IPR029034; Cystine-knot_cytokine.
InterPro; IPR000072; PDGF/VEGF_dom.
Pfam; PF00341; PDGF; 1.
SMART; SM00141; PDGF; 1.
SUPFAM; SSF57501; SSF57501; 1.
PROSITE; PS50278; PDGF_2; 1.
2: Evidence at transcript level;
Complete proteome {ECO:0000313|Proteomes:UP000000803};
Growth factor {ECO:0000256|RuleBase:RU003818};
Reference proteome {ECO:0000313|Proteomes:UP000000803};
Signal {ECO:0000256|SAM:SignalP}.
SIGNAL 1 33 {ECO:0000256|SAM:SignalP}.
CHAIN 34 325 {ECO:0000256|SAM:SignalP}.
/FTId=PRO_5015100729.
DOMAIN 127 228 PDGF_2. {ECO:0000259|PROSITE:PS50278}.
SEQUENCE 325 AA; 35780 MW; D215BC47DCA4FD9D CRC64;
MAMSRIRILK PMQHPLLILP VLLLVLIVSE AAAGSLVSPN NRQPSQRFFY AAATSSSSTQ
TKVRLLRQAD DPSAAPGALE GSCCQGAAAE AGTPLTLPLS VSAELTNVTA DYDVSGEMPS
SKENFKRSIM KSTVRNATPA SCSPQPTIVE LKPPAEDEAN YYYMPACTRI SRCNGCCGST
LISCQPTEVE QVQLRVRKVD RAATSGRRPF TIITVEQHTQ CRCDCRTKAE DCNVYQSYRK
DLCRCECHNT DARDKCLEQA ENKYWVDDNC TCVCRYNQSC TTGTVFDETQ CKCTDPAAPI
DVLDRKRFIV QAVQVDPDNT TLYSV


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