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LD33094p (Liprin-alpha, isoform A) (Liprin-alpha, isoform B)

 Q9VM93_DROME            Unreviewed;      1201 AA.
Q9VM93;
01-MAY-2000, integrated into UniProtKB/TrEMBL.
01-OCT-2002, sequence version 2.
12-SEP-2018, entry version 153.
SubName: Full=LD33094p {ECO:0000313|EMBL:AAO42648.1};
SubName: Full=Liprin-alpha, isoform A {ECO:0000313|EMBL:AAF52430.2};
SubName: Full=Liprin-alpha, isoform B {ECO:0000313|EMBL:AAN10596.1};
Name=Liprin-alpha {ECO:0000313|EMBL:AAF52430.2,
ECO:0000313|FlyBase:FBgn0046704};
Synonyms=DLiprin {ECO:0000313|EMBL:AAF52430.2},
DLiprin-alpha {ECO:0000313|EMBL:AAF52430.2},
Dliprin-alpha {ECO:0000313|EMBL:AAF52430.2},
Dmel\CG11199 {ECO:0000313|EMBL:AAF52430.2},
LIP {ECO:0000313|EMBL:AAF52430.2},
lip-alpha {ECO:0000313|EMBL:AAF52430.2},
LIP.1 {ECO:0000313|EMBL:AAF52430.2},
LIP1 {ECO:0000313|EMBL:AAF52430.2},
Liprin {ECO:0000313|EMBL:AAF52430.2},
lpr {ECO:0000313|EMBL:AAF52430.2}, oos {ECO:0000313|EMBL:AAF52430.2};
ORFNames=CG11199 {ECO:0000313|EMBL:AAN10596.1,
ECO:0000313|FlyBase:FBgn0046704},
Dmel_CG11199 {ECO:0000313|EMBL:AAF52430.2};
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227 {ECO:0000313|EMBL:AAF52430.2, ECO:0000313|Proteomes:UP000000803};
[1] {ECO:0000313|EMBL:AAF52430.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L.,
Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J.,
Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O.,
Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[2] {ECO:0000313|EMBL:AAF52430.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537568;
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
"Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence.";
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002).
[3] {ECO:0000313|EMBL:AAF52430.2, ECO:0000313|Proteomes:UP000000803}
GENOME REANNOTATION.
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[4] {ECO:0000313|EMBL:AAF52430.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537573;
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M.,
Ashburner M., Celniker S.E.;
"The transposable elements of the Drosophila melanogaster euchromatin:
a genomics perspective.";
Genome Biol. 3:RESEARCH0084-RESEARCH0084(2002).
[5] {ECO:0000313|EMBL:AAF52430.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537574;
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
Karpen G.H.;
"Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly.";
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002).
[6] {ECO:0000313|EMBL:AAO42648.1}
NUCLEOTIDE SEQUENCE.
STRAIN=Berkeley {ECO:0000313|EMBL:AAO42648.1};
Stapleton M., Brokstein P., Hong L., Agbayani A., Carlson J.,
Champe M., Chavez C., Dorsett V., Dresnek D., Farfan D., Frise E.,
George R., Gonzalez M., Guarin H., Kronmiller B., Li P., Liao G.,
Miranda A., Mungall C.J., Nunoo J., Pacleb J., Paragas V., Park S.,
Patel S., Phouanenavong S., Wan K., Yu C., Lewis S.E., Rubin G.M.,
Celniker S.;
Submitted (FEB-2003) to the EMBL/GenBank/DDBJ databases.
[7] {ECO:0000313|EMBL:AAF52430.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=16110336; DOI=10.1371/journal.pcbi.0010022;
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
Ashburner M., Anxolabehere D.;
"Combined evidence annotation of transposable elements in genome
sequences.";
PLoS Comput. Biol. 1:166-175(2005).
[8] {ECO:0000313|EMBL:AAF52430.2}
NUCLEOTIDE SEQUENCE.
Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S.,
Svirskas R., Rubin G.;
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
[9] {ECO:0000313|EMBL:AAF52430.2}
NUCLEOTIDE SEQUENCE.
Berkeley Drosophila Genome Project;
Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R.,
Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E.,
Yu C., Rubin G.;
"Drosophila melanogaster release 4 sequence.";
Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases.
[10] {ECO:0000313|EMBL:AAF52430.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569856; DOI=10.1126/science.1139815;
Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
"The Release 5.1 annotation of Drosophila melanogaster
heterochromatin.";
Science 316:1586-1591(2007).
[11] {ECO:0000313|EMBL:AAF52430.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569867; DOI=10.1126/science.1139816;
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
Dimitri P., Karpen G.H., Celniker S.E.;
"Sequence finishing and mapping of Drosophila melanogaster
heterochromatin.";
Science 316:1625-1628(2007).
[12] {ECO:0000313|EMBL:AAF52430.2}
NUCLEOTIDE SEQUENCE.
FlyBase;
Submitted (MAY-2018) to the EMBL/GenBank/DDBJ databases.
-!- INTERACTION:
P16621:Lar; NbExp=6; IntAct=EBI-113116, EBI-668630;
-----------------------------------------------------------------------
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EMBL; AE014134; AAF52430.2; -; Genomic_DNA.
EMBL; AE014134; AAN10596.1; -; Genomic_DNA.
EMBL; BT004484; AAO42648.1; -; mRNA.
RefSeq; NP_609067.2; NM_135223.3.
RefSeq; NP_723208.1; NM_164707.3.
UniGene; Dm.12197; -.
DIP; DIP-61238N; -.
IntAct; Q9VM93; 7.
EnsemblMetazoa; FBtr0079300; FBpp0078930; FBgn0046704.
EnsemblMetazoa; FBtr0079301; FBpp0078931; FBgn0046704.
GeneID; 249072; -.
UCSC; CG11199-RA; d. melanogaster.
CTD; 249072; -.
FlyBase; FBgn0046704; Liprin-alpha.
eggNOG; KOG0249; Eukaryota.
eggNOG; ENOG410XP8Z; LUCA.
GeneTree; ENSGT00760000119138; -.
OrthoDB; EOG091G14UK; -.
Reactome; R-DME-388844; Receptor-type tyrosine-protein phosphatases.
GenomeRNAi; 249072; -.
Proteomes; UP000000803; Chromosome 2L.
Bgee; FBgn0046704; Expressed in 35 organ(s), highest expression level in cleaving embryo.
GO; GO:1904115; C:axon cytoplasm; IEA:GOC.
GO; GO:0005925; C:focal adhesion; IDA:FlyBase.
GO; GO:0048786; C:presynaptic active zone; IDA:FlyBase.
GO; GO:0032991; C:protein-containing complex; IDA:FlyBase.
GO; GO:0045202; C:synapse; IDA:FlyBase.
GO; GO:0048490; P:anterograde synaptic vesicle transport; IMP:FlyBase.
GO; GO:0048675; P:axon extension; IMP:FlyBase.
GO; GO:0007411; P:axon guidance; IMP:FlyBase.
GO; GO:0007412; P:axon target recognition; IMP:FlyBase.
GO; GO:0008594; P:photoreceptor cell morphogenesis; IMP:FlyBase.
GO; GO:0045467; P:R7 cell development; IMP:FlyBase.
GO; GO:0048841; P:regulation of axon extension involved in axon guidance; IMP:FlyBase.
GO; GO:0031290; P:retinal ganglion cell axon guidance; IMP:FlyBase.
GO; GO:0007416; P:synapse assembly; IMP:FlyBase.
GO; GO:0051124; P:synaptic growth at neuromuscular junction; IMP:FlyBase.
GO; GO:0097479; P:synaptic vesicle localization; IMP:FlyBase.
CDD; cd09562; SAM_liprin-alpha1_2_3_4_repeat; 1.
CDD; cd09565; SAM_liprin-alpha1_2_3_4_repeat; 1.
CDD; cd09568; SAM_liprin-alpha1_2_3_4_repeat; 1.
InterPro; IPR029515; Liprin.
InterPro; IPR037620; Liprin-alpha_SAM_rpt_1.
InterPro; IPR037621; Liprin-alpha_SAM_rpt_2.
InterPro; IPR037622; Liprin-alpha_SAM_rpt_3.
InterPro; IPR001660; SAM.
InterPro; IPR013761; SAM/pointed_sf.
InterPro; IPR030442; Syd-2.
PANTHER; PTHR12587; PTHR12587; 1.
PANTHER; PTHR12587:SF20; PTHR12587:SF20; 1.
Pfam; PF00536; SAM_1; 1.
Pfam; PF07647; SAM_2; 1.
SMART; SM00454; SAM; 3.
SUPFAM; SSF47769; SSF47769; 3.
PROSITE; PS50105; SAM_DOMAIN; 3.
1: Evidence at protein level;
Coiled coil {ECO:0000256|SAM:Coils};
Complete proteome {ECO:0000313|Proteomes:UP000000803};
Proteomics identification {ECO:0000213|PeptideAtlas:Q9VM93};
Reference proteome {ECO:0000313|Proteomes:UP000000803}.
DOMAIN 945 1011 SAM. {ECO:0000259|PROSITE:PS50105}.
DOMAIN 1038 1094 SAM. {ECO:0000259|PROSITE:PS50105}.
DOMAIN 1118 1187 SAM. {ECO:0000259|PROSITE:PS50105}.
COILED 35 76 {ECO:0000256|SAM:Coils}.
COILED 92 112 {ECO:0000256|SAM:Coils}.
COILED 177 204 {ECO:0000256|SAM:Coils}.
COILED 266 300 {ECO:0000256|SAM:Coils}.
COILED 308 384 {ECO:0000256|SAM:Coils}.
COILED 406 447 {ECO:0000256|SAM:Coils}.
COILED 473 528 {ECO:0000256|SAM:Coils}.
COILED 638 679 {ECO:0000256|SAM:Coils}.
SEQUENCE 1201 AA; 134727 MW; D502D42D4E6A5565 CRC64;
MWNMMCDVMP TISEDSISQR SSQFSGEDAN FEQLMVSMLD ERDKLMDSLR EAQERLNETE
NKLRDVEKER DSLQRQINAN LPQEFATLTK ELTQARETLL ERDEEIGELK AERNNTRLLL
EHLECLVSRH ERSLRMTVVK RQAAAQSGVS SEVEVLKALK SLFEHHKALD EKVRERLRLS
IEKNNMMEEE LSSAKEELAQ YKAGVVPAGV GSGSGAGSAA TTAGGGGAEN GLKEKMAGVG
GSGGVNGEAN ELNDYAAKTH ELQTIIEKQT SELSQWQRRV SDLNNKISEL EENMSRVQKE
HCKAQDQCAK LQRDLRENVA QKEDQEERIT TLEKRYLNAQ RESTSLHDLN EKLEQELRHK
EAQLKLHEEK IGAIEEKLEL SEQKLAQHAK LQPDMEEQLK ARMEALTKAQ ERHGSAEDRI
RGLETNLDEK TNEVVRLNQR LKMNEEHNLR LSSTVDKLLS ESNERLQVHL KERMHALDEK
NALTQELEKA RKVAEELHHE KSEIMKELSK TRLEIENFKR QLLQQEIAYN IQQTEALTRS
LSPSSVVDPS GAFSRSNSHA SFETHSLRRQ SKQRLSEENA LVRSMAEQEW EKLQQAAHAQ
QQAYELASAA DCDDSDVLYA AATDMMSPSG HTDAQTLAMM LQEQLDAINN EIRLIQEEKQ
STEARAEELE SRVGSLEHVN LLARGRSMDR QSPPMSGRST PNSPQRDFMQ KYHTLNLPVL
SSDASREELH GGMSTTGDSS SGGAASPLTA RSMRLERVAQ ALAHSQEELR RRSIGLNPNA
SVAPNHTGGH MPLSSHSYGL SPLSSRYGSQ ESLRHYNTMG SMSMLQTPTS GVSREAAAAA
VQKKKGIKSS LGRFFSKKEK VKGVKDTLPD GSPSMMSIGN LSIGLSEVDS NYDAMSMTGG
MMPRIASSQG SKISSVDYGR QKKEHDYRND LLGEAMKAGT PFALWNGPTI VAWLELWVGM
PAWYVAACRA NVKSGAIMSA LSDTEIQREI GISNPLHRLK LRLAIQEMVS LTSPSAPQTS
RTTLAFGDMN HEWIGNYWLP GLGLPQYRTT FMECLVDARM LDHLTKKDLR GQLKMVDSFH
RTSLQYGISM LKRLNYDRTE LEHRRKMSEN GLCDVLVWSN ERVIRWVGSI GLKEYANNLL
ESGVHGGLMA LDEGFDANAM GLALQIPTQN AQARQILDTE FNNLLQIATD RRPENEQRSA
S


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