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LDL receptor-related protein 6 (Low density lipoprotein receptor-related protein 6 (Predicted))

 D3ZUH9_RAT              Unreviewed;      1234 AA.
D3ZUH9;
20-APR-2010, integrated into UniProtKB/TrEMBL.
20-APR-2010, sequence version 1.
07-NOV-2018, entry version 85.
SubName: Full=LDL receptor-related protein 6 {ECO:0000313|Ensembl:ENSRNOP00000063261};
SubName: Full=Low density lipoprotein receptor-related protein 6 (Predicted) {ECO:0000313|EMBL:EDM01658.1};
Name=Lrp6 {ECO:0000313|Ensembl:ENSRNOP00000063261,
ECO:0000313|RGD:1304749};
Synonyms=Lrp6_predicted {ECO:0000313|EMBL:EDM01658.1};
ORFNames=rCG_29933 {ECO:0000313|EMBL:EDM01658.1};
Rattus norvegicus (Rat).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
NCBI_TaxID=10116 {ECO:0000313|Ensembl:ENSRNOP00000063261, ECO:0000313|Proteomes:UP000002494};
[1] {ECO:0000313|Ensembl:ENSRNOP00000063261, ECO:0000313|Proteomes:UP000002494}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Brown Norway {ECO:0000313|Ensembl:ENSRNOP00000063261,
ECO:0000313|Proteomes:UP000002494};
PubMed=15057822; DOI=10.1038/nature02426;
Rat Genome Sequencing Project Consortium;
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J.,
Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G.,
Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G.,
Morgan M., Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G.,
Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S.,
Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T.,
Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T.,
Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A.,
Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M.,
Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K.,
Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S.,
Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J.,
Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y.,
Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A.,
Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J.,
D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R.,
Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A.,
Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E.,
Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E.,
Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J.,
Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D.,
Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M.,
Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O.,
Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O.,
Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H.,
Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S.,
Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J.,
Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M.,
Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E.,
Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F.,
Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K.,
Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S.,
Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M.,
Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M.,
Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A.,
Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S.,
Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G.,
Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H.,
Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R.,
Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M.,
Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H.,
Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S.,
Collins F.S.;
"Genome sequence of the Brown Norway rat yields insights into
mammalian evolution.";
Nature 428:493-521(2004).
[2] {ECO:0000313|EMBL:EDM01658.1}
NUCLEOTIDE SEQUENCE.
STRAIN=BN {ECO:0000313|EMBL:EDM01658.1};
PubMed=15632090; DOI=10.1101/gr.2889405;
Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M.,
Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z.,
Istrail S., Li P., Sutton G.;
"Gene and alternative splicing annotation with AIR.";
Genome Res. 15:54-66(2005).
[3] {ECO:0000313|EMBL:EDM01658.1}
NUCLEOTIDE SEQUENCE.
STRAIN=BN {ECO:0000313|EMBL:EDM01658.1};
Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H.,
Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M.,
Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L.,
Lu F., Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C.,
Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F.;
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases.
[4] {ECO:0000313|Ensembl:ENSRNOP00000063261}
IDENTIFICATION.
STRAIN=Brown Norway {ECO:0000313|Ensembl:ENSRNOP00000063261};
Ensembl;
Submitted (JUL-2011) to UniProtKB.
-!- CAUTION: Lacks conserved residue(s) required for the propagation
of feature annotation. {ECO:0000256|PROSITE-ProRule:PRU00124}.
-----------------------------------------------------------------------
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EMBL; AABR07062321; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AABR07062322; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; CH473964; EDM01658.1; -; Genomic_DNA.
RefSeq; NP_001101362.1; NM_001107892.1.
UniGene; Rn.229041; -.
STRING; 10116.ENSRNOP00000063261; -.
PRIDE; D3ZUH9; -.
Ensembl; ENSRNOT00000066575; ENSRNOP00000063261; ENSRNOG00000006338.
GeneID; 312781; -.
KEGG; rno:312781; -.
CTD; 4040; -.
RGD; 1304749; Lrp6.
eggNOG; KOG1215; Eukaryota.
eggNOG; ENOG410XP34; LUCA.
GeneTree; ENSGT00760000118968; -.
KO; K03068; -.
Reactome; R-RNO-3772470; Negative regulation of TCF-dependent signaling by WNT ligand antagonists.
Reactome; R-RNO-4641262; Disassembly of the destruction complex and recruitment of AXIN to the membrane.
Reactome; R-RNO-4641263; Regulation of FZD by ubiquitination.
Proteomes; UP000002494; Chromosome 4.
Bgee; ENSRNOG00000006338; Expressed in 10 organ(s), highest expression level in liver.
ExpressionAtlas; D3ZUH9; baseline and differential.
GO; GO:0005901; C:caveola; IBA:GO_Central.
GO; GO:0009986; C:cell surface; IBA:GO_Central.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0005622; C:intracellular; IEA:GOC.
GO; GO:0043025; C:neuronal cell body; IDA:RGD.
GO; GO:0045202; C:synapse; IDA:RGD.
GO; GO:0034185; F:apolipoprotein binding; IBA:GO_Central.
GO; GO:0005041; F:low-density lipoprotein particle receptor activity; IBA:GO_Central.
GO; GO:0009952; P:anterior/posterior pattern specification; IBA:GO_Central.
GO; GO:0090245; P:axis elongation involved in somitogenesis; IBA:GO_Central.
GO; GO:0060349; P:bone morphogenesis; IBA:GO_Central.
GO; GO:0046849; P:bone remodeling; IBA:GO_Central.
GO; GO:0060444; P:branching involved in mammary gland duct morphogenesis; IBA:GO_Central.
GO; GO:0060070; P:canonical Wnt signaling pathway; IMP:RGD.
GO; GO:0098609; P:cell-cell adhesion; IMP:RGD.
GO; GO:0021587; P:cerebellum morphogenesis; IBA:GO_Central.
GO; GO:0021987; P:cerebral cortex development; IBA:GO_Central.
GO; GO:0007268; P:chemical synaptic transmission; IMP:RGD.
GO; GO:0060026; P:convergent extension; IBA:GO_Central.
GO; GO:0048596; P:embryonic camera-type eye morphogenesis; IBA:GO_Central.
GO; GO:0030326; P:embryonic limb morphogenesis; IBA:GO_Central.
GO; GO:0009880; P:embryonic pattern specification; IBA:GO_Central.
GO; GO:0060059; P:embryonic retina morphogenesis in camera-type eye; IBA:GO_Central.
GO; GO:0035261; P:external genitalia morphogenesis; IBA:GO_Central.
GO; GO:0060325; P:face morphogenesis; IBA:GO_Central.
GO; GO:0001702; P:gastrulation with mouth forming second; IBA:GO_Central.
GO; GO:0030901; P:midbrain development; IBA:GO_Central.
GO; GO:0030917; P:midbrain-hindbrain boundary development; IBA:GO_Central.
GO; GO:0014033; P:neural crest cell differentiation; IBA:GO_Central.
GO; GO:0014029; P:neural crest formation; IBA:GO_Central.
GO; GO:0001843; P:neural tube closure; IBA:GO_Central.
GO; GO:0042475; P:odontogenesis of dentin-containing tooth; IBA:GO_Central.
GO; GO:0003344; P:pericardium morphogenesis; IBA:GO_Central.
GO; GO:0007204; P:positive regulation of cytosolic calcium ion concentration; IMP:RGD.
GO; GO:0051091; P:positive regulation of DNA-binding transcription factor activity; IBA:GO_Central.
GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IBA:GO_Central.
GO; GO:0090009; P:primitive streak formation; IBA:GO_Central.
GO; GO:0090118; P:receptor-mediated endocytosis involved in cholesterol transport; IBA:GO_Central.
GO; GO:0006355; P:regulation of transcription, DNA-templated; IMP:RGD.
GO; GO:0043434; P:response to peptide hormone; IEP:RGD.
GO; GO:0060021; P:roof of mouth development; IBA:GO_Central.
GO; GO:0021794; P:thalamus development; IBA:GO_Central.
GO; GO:0060535; P:trachea cartilage morphogenesis; IBA:GO_Central.
GO; GO:0090244; P:Wnt signaling pathway involved in somitogenesis; IBA:GO_Central.
CDD; cd00112; LDLa; 3.
Gene3D; 2.120.10.30; -; 4.
InterPro; IPR011042; 6-blade_b-propeller_TolB-like.
InterPro; IPR000742; EGF-like_dom.
InterPro; IPR036055; LDL_receptor-like_sf.
InterPro; IPR023415; LDLR_class-A_CS.
InterPro; IPR000033; LDLR_classB_rpt.
InterPro; IPR002172; LDrepeatLR_classA_rpt.
Pfam; PF00057; Ldl_recept_a; 3.
Pfam; PF00058; Ldl_recept_b; 10.
PRINTS; PR00261; LDLRECEPTOR.
SMART; SM00181; EGF; 4.
SMART; SM00192; LDLa; 3.
SMART; SM00135; LY; 17.
SUPFAM; SSF57424; SSF57424; 3.
PROSITE; PS01209; LDLRA_1; 2.
PROSITE; PS50068; LDLRA_2; 3.
PROSITE; PS51120; LDLRB; 18.
4: Predicted;
Complete proteome {ECO:0000313|Proteomes:UP000002494};
Disulfide bond {ECO:0000256|PROSITE-ProRule:PRU00124,
ECO:0000256|SAAS:SAAS01050632};
EGF-like domain {ECO:0000256|SAAS:SAAS00063520};
Lipoprotein {ECO:0000313|EMBL:EDM01658.1};
Membrane {ECO:0000256|SAAS:SAAS00492819};
Receptor {ECO:0000313|EMBL:EDM01658.1};
Reference proteome {ECO:0000313|Proteomes:UP000002494};
Repeat {ECO:0000256|SAAS:SAAS00998998};
Transmembrane {ECO:0000256|SAAS:SAAS00492819};
Transmembrane helix {ECO:0000256|SAAS:SAAS00492819}.
REPEAT 1 42 LDL-receptor class B.
{ECO:0000256|PROSITE-ProRule:PRU00461}.
REPEAT 43 85 LDL-receptor class B.
{ECO:0000256|PROSITE-ProRule:PRU00461}.
REPEAT 86 96 LDL-receptor class B.
{ECO:0000256|PROSITE-ProRule:PRU00461}.
DOMAIN 134 173 EGF-like. {ECO:0000259|SMART:SM00181}.
REPEAT 221 263 LDL-receptor class B.
{ECO:0000256|PROSITE-ProRule:PRU00461}.
REPEAT 264 306 LDL-receptor class B.
{ECO:0000256|PROSITE-ProRule:PRU00461}.
REPEAT 307 350 LDL-receptor class B.
{ECO:0000256|PROSITE-ProRule:PRU00461}.
REPEAT 351 393 LDL-receptor class B.
{ECO:0000256|PROSITE-ProRule:PRU00461}.
REPEAT 394 436 LDL-receptor class B.
{ECO:0000256|PROSITE-ProRule:PRU00461}.
DOMAIN 440 477 EGF-like. {ECO:0000259|SMART:SM00181}.
REPEAT 523 565 LDL-receptor class B.
{ECO:0000256|PROSITE-ProRule:PRU00461}.
REPEAT 566 608 LDL-receptor class B.
{ECO:0000256|PROSITE-ProRule:PRU00461}.
REPEAT 609 651 LDL-receptor class B.
{ECO:0000256|PROSITE-ProRule:PRU00461}.
REPEAT 652 688 LDL-receptor class B.
{ECO:0000256|PROSITE-ProRule:PRU00461}.
REPEAT 692 734 LDL-receptor class B.
{ECO:0000256|PROSITE-ProRule:PRU00461}.
DOMAIN 741 779 EGF-like. {ECO:0000259|SMART:SM00181}.
REPEAT 826 874 LDL-receptor class B.
{ECO:0000256|PROSITE-ProRule:PRU00461}.
REPEAT 875 917 LDL-receptor class B.
{ECO:0000256|PROSITE-ProRule:PRU00461}.
REPEAT 918 962 LDL-receptor class B.
{ECO:0000256|PROSITE-ProRule:PRU00461}.
REPEAT 963 1005 LDL-receptor class B.
{ECO:0000256|PROSITE-ProRule:PRU00461}.
REPEAT 1006 1047 LDL-receptor class B.
{ECO:0000256|PROSITE-ProRule:PRU00461}.
DOMAIN 1055 1099 EGF-like. {ECO:0000259|SMART:SM00181}.
DISULFID 1119 1134 {ECO:0000256|PROSITE-ProRule:PRU00124}.
DISULFID 1137 1149 {ECO:0000256|PROSITE-ProRule:PRU00124}.
DISULFID 1144 1162 {ECO:0000256|PROSITE-ProRule:PRU00124}.
DISULFID 1156 1171 {ECO:0000256|PROSITE-ProRule:PRU00124}.
DISULFID 1175 1187 {ECO:0000256|PROSITE-ProRule:PRU00124}.
DISULFID 1182 1200 {ECO:0000256|PROSITE-ProRule:PRU00124}.
DISULFID 1194 1209 {ECO:0000256|PROSITE-ProRule:PRU00124}.
SEQUENCE 1234 AA; 139375 MW; 2C34CA7DD6BB0F2A CRC64;
MYWTDWGEVP KIERAGMDGS SRFVIINTEI YWPNGLTLDY EERKLYWADA KLNFIHKSNL
DGTNRQAVVK GSLPHPFALT LFEDTLYWTD WNTHSILACN KYTGEGLREI HSNIFSPMDI
HAFSQQRQPN ATNPCGIDNG GCSHLCLMSP VKPFYQCACP TGVKLLESGK TCKDGATELL
LLARRTDLRR ISLDTPDFTD IVLQLEDIRH AIAIDYDPVE GYVYWTDDEV RAIRRSFIDG
SGSQFVVTAQ IAHPDGIAVD WVARNLYWTD TGTDRIEVTR LNGTMRKILI SEDLEEPRAI
VLDPMAGYMY WTDWGEIPKI ERAALDGSDR VVLVNTSLGW PNGLALDYDE GTIYWGDAKT
DKIEVMNTDG TGRRVLVEDK IPHIFGFTLL GDYVYWTDWQ RRSIERVHKR SAEREVIIDQ
LPDLMGLKAT SVHRVIGSNP CAEENGGCSH LCLYRPQGLR CACPIGFELI SDMKTCIVPE
AFLLFSRRAD IRRISLETNN NNVAIPLTGV KEASALDFDV TDNRIYWTDI SLKTISRAFM
NGSALEHVVE FGLDYPEGMA VDWLGKNLYW ADTGTNRIEV SKLDGQHRQV LVWKDLDSPR
ALALDPAEGF MYWTEWGGKP KIDRAAMDGS ERTTLVPNVG RANGLTIDYA KRRLYWTDLD
TNLIESSNML GLNREVIADD LPHPFGLTQY QDYIYWTDWS RRSIERANKT SGQNRTIIQG
HLDYVMDILV FHSSRQAGWN ECASSNGHCS HLCLAVPVGG FVCGCPAHYS LNADNRTCSA
PTTFLLFSQK SAINRMVIDE QQSPDIILPI HSLRNVRAID YDPLDKQLYW IDSRQNMIRK
AQEDGGQGFT VVVSSVPNQN LEIQPYDLSI DIYSRYIYWT CEATNVIDVT RLDGRSVGVV
LKGEQDRPRA IVVNPEKGYM YFTNLQERSP KIERAALDGT EREVLFFSGL SKPVALALDS
KLSRLFWADS DLRRIESSDL SGANRIVLED SNILQPVGLT VFENWLYWID KQQQMIEKID
MTGREGRTKV QARIAQLSDI HAVKELNLQE YRQHPCAQDN GGCSHICLVK GDGTTRCSCP
MHLVLLQDEL SCGEPPTCSP QQFTCFTGDI DCIPVAWRCD GFTECEDHSD ELNCPVCSES
QFQCASGQCI DGALRCNGDA NCQDKSDEKN CEVLCLIDQF RCANGQCVGK HKKCDHNVDC
SDRSDELDCY FEPTTILQAV QLPALCTAHY TLQH


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