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LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1)

 LHX1_MOUSE              Reviewed;         406 AA.
P63006; P36199;
31-AUG-2004, integrated into UniProtKB/Swiss-Prot.
31-AUG-2004, sequence version 1.
22-NOV-2017, entry version 123.
RecName: Full=LIM/homeobox protein Lhx1;
Short=LIM homeobox protein 1;
AltName: Full=Homeobox protein Lim-1;
Name=Lhx1; Synonyms=Lim-1, Lim1;
Mus musculus (Mouse).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
NCBI_TaxID=10090;
[1]
NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, AND DEVELOPMENTAL
STAGE.
STRAIN=BALB/cJ; TISSUE=Brain;
PubMed=7909459; DOI=10.1002/aja.1001990108;
Fujii T., Pichel J.G., Taira M., Toyama R., Dawid I.B., Westphal H.;
"Expression patterns of the murine LIM class homeobox gene lim1 in the
developing brain and excretory system.";
Dev. Dyn. 199:73-83(1994).
[2]
NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, AND TISSUE SPECIFICITY.
TISSUE=Embryo;
PubMed=7904966; DOI=10.1006/dbio.1994.1018;
Barnes J.D., Crosby J.L., Jones C.M., Wright C.V., Hogan B.L.;
"Embryonic expression of Lim-1, the mouse homolog of Xenopus Xlim-1,
suggests a role in lateral mesoderm differentiation and
neurogenesis.";
Dev. Biol. 161:168-178(1994).
[3]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=129/SvEv;
PubMed=10337615; DOI=10.1007/s003359901020;
Li Y., Cheah S.S., Deng J.M., Shawlot W., Behringer R.R.;
"Sequence and genomic organization of the mouse Lim1 gene.";
Mamm. Genome 10:444-446(1999).
[4]
SUBCELLULAR LOCATION, AND TISSUE SPECIFICITY.
PubMed=8793615;
Karavanov A.A., Saint-Jeannet J.P., Karavanova I., Taira M.,
Dawid I.B.;
"The LIM homeodomain protein Lim-1 is widely expressed in neural,
neural crest and mesoderm derivatives in vertebrate development.";
Int. J. Dev. Biol. 40:453-461(1996).
[5]
INTERACTION WITH LDB1, AND MUTAGENESIS OF CYS-28 AND CYS-88.
PubMed=8918878; DOI=10.1038/384270a0;
Agulnick A.D., Taira M., Breen J.J., Tanaka T., Dawid I.B.,
Westphal H.;
"Interactions of the LIM-domain-binding factor Ldb1 with LIM
homeodomain proteins.";
Nature 384:270-272(1996).
[6]
INTERACTION WITH LDB1.
PubMed=9468533; DOI=10.1074/jbc.273.8.4712;
Breen J.J., Agulnick A.D., Westphal H., Dawid I.B.;
"Interactions between LIM domains and the LIM domain-binding protein
Ldb1.";
J. Biol. Chem. 273:4712-4717(1998).
-!- FUNCTION: Potential transcription factor. May play a role in early
mesoderm formation and later in lateral mesoderm differentiation
and neurogenesis. {ECO:0000269|PubMed:7904966}.
-!- SUBUNIT: Interacts with LDB1 via the tandem LIM domains.
{ECO:0000269|PubMed:8918878, ECO:0000269|PubMed:9468533}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-
ProRule:PRU00108, ECO:0000269|PubMed:8793615}.
-!- TISSUE SPECIFICITY: In mid to late stage embryos, expressed in a
restricted region of mesoderm in the primitive streak. At 7.5
days, expressed in a horseshoe shape at the periphery of the node,
as well as along both sides of the adjacent notochord. Also
present in presumptive lateral and intermediate mesoderm. Later,
expression become progressively restricted to intermediate
mesoderm, and the developing excretory system including the
pronephric region, mesonephros, nephric duct and metanephros. In
the metanephros, strongly expressed in renal vesicles and S-shaped
and coma-shaped bodies, as well as in the ureteric bud and its
derivatives. Also expressed in the dorsal root ganglia. By stage
10.5, also expressed in regions of the central nervous system in
the telencephalon through to the spinal cord. In adults, expressed
in the cerebellum/medulla and kidney, and at very low levels in
the cerebrum. {ECO:0000269|PubMed:7904966,
ECO:0000269|PubMed:7909459, ECO:0000269|PubMed:8793615}.
-!- DEVELOPMENTAL STAGE: Expressed in both embryos and adults.
{ECO:0000269|PubMed:7909459}.
-!- DOMAIN: The LIM domains exert a negative regulatory function and
disruption of the LIM domains produces an activated form. In
addition, two activation domains and a negative regulatory domain
exist C-terminally to the homeobox (By similarity). {ECO:0000250}.
-----------------------------------------------------------------------
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EMBL; Z27410; CAA81797.1; -; mRNA.
EMBL; S68107; AAC60669.2; -; mRNA.
EMBL; AF039706; AAD02169.1; -; Genomic_DNA.
EMBL; AF039705; AAD02169.1; JOINED; Genomic_DNA.
CCDS; CCDS25187.1; -.
PIR; I48637; I48637.
RefSeq; NP_032524.1; NM_008498.2.
UniGene; Mm.4965; -.
ProteinModelPortal; P63006; -.
SMR; P63006; -.
BioGrid; 201154; 2.
STRING; 10090.ENSMUSP00000018842; -.
PhosphoSitePlus; P63006; -.
PaxDb; P63006; -.
PRIDE; P63006; -.
Ensembl; ENSMUST00000018842; ENSMUSP00000018842; ENSMUSG00000018698.
GeneID; 16869; -.
KEGG; mmu:16869; -.
UCSC; uc007kqo.1; mouse.
CTD; 3975; -.
MGI; MGI:99783; Lhx1.
eggNOG; KOG0490; Eukaryota.
eggNOG; ENOG410YIJ3; LUCA.
GeneTree; ENSGT00760000118921; -.
HOGENOM; HOG000231630; -.
HOVERGEN; HBG006263; -.
InParanoid; P63006; -.
KO; K09372; -.
OMA; DDQNLGG; -.
OrthoDB; EOG091G0BSD; -.
PhylomeDB; P63006; -.
TreeFam; TF315442; -.
PRO; PR:P63006; -.
Proteomes; UP000000589; Chromosome 11.
Bgee; ENSMUSG00000018698; -.
CleanEx; MM_LHX1; -.
ExpressionAtlas; P63006; baseline and differential.
Genevisible; P63006; MM.
GO; GO:0005622; C:intracellular; IDA:MGI.
GO; GO:0005634; C:nucleus; IDA:UniProtKB.
GO; GO:0043234; C:protein complex; IDA:UniProtKB.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
GO; GO:0003714; F:transcription corepressor activity; ISS:UniProtKB.
GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IMP:UniProtKB.
GO; GO:0048646; P:anatomical structure formation involved in morphogenesis; IMP:MGI.
GO; GO:0009653; P:anatomical structure morphogenesis; IMP:MGI.
GO; GO:0009948; P:anterior/posterior axis specification; IGI:MGI.
GO; GO:0009952; P:anterior/posterior pattern specification; IGI:MGI.
GO; GO:0001658; P:branching involved in ureteric bud morphogenesis; IEP:UniProtKB.
GO; GO:0007267; P:cell-cell signaling; IGI:MGI.
GO; GO:0044344; P:cellular response to fibroblast growth factor stimulus; IEA:Ensembl.
GO; GO:0021702; P:cerebellar Purkinje cell differentiation; IGI:MGI.
GO; GO:0021937; P:cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation; IGI:MGI.
GO; GO:0021549; P:cerebellum development; IGI:MGI.
GO; GO:0060067; P:cervix development; IMP:UniProtKB.
GO; GO:0072049; P:comma-shaped body morphogenesis; IMP:UniProtKB.
GO; GO:0009953; P:dorsal/ventral pattern formation; IGI:MGI.
GO; GO:0001705; P:ectoderm formation; IGI:MGI.
GO; GO:0009880; P:embryonic pattern specification; IGI:MGI.
GO; GO:0060059; P:embryonic retina morphogenesis in camera-type eye; IMP:UniProtKB.
GO; GO:0048703; P:embryonic viscerocranium morphogenesis; IMP:UniProtKB.
GO; GO:0001706; P:endoderm formation; IMP:MGI.
GO; GO:0060429; P:epithelium development; IMP:UniProtKB.
GO; GO:0021871; P:forebrain regionalization; IGI:MGI.
GO; GO:0001702; P:gastrulation with mouth forming second; IMP:MGI.
GO; GO:0060322; P:head development; IGI:UniProtKB.
GO; GO:0035852; P:horizontal cell localization; IMP:UniProtKB.
GO; GO:0001822; P:kidney development; IMP:MGI.
GO; GO:0097477; P:lateral motor column neuron migration; IMP:UniProtKB.
GO; GO:0072177; P:mesonephric duct development; IEA:Ensembl.
GO; GO:0001823; P:mesonephros development; IEP:UniProtKB.
GO; GO:0072278; P:metanephric comma-shaped body morphogenesis; IEA:Ensembl.
GO; GO:0072224; P:metanephric glomerulus development; IEA:Ensembl.
GO; GO:0035502; P:metanephric part of ureteric bud development; IEA:Ensembl.
GO; GO:0072283; P:metanephric renal vesicle morphogenesis; IEP:UniProtKB.
GO; GO:0072284; P:metanephric S-shaped body morphogenesis; IEP:UniProtKB.
GO; GO:0001656; P:metanephros development; IEP:UniProtKB.
GO; GO:0008045; P:motor neuron axon guidance; IMP:UniProtKB.
GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IMP:UniProtKB.
GO; GO:0035849; P:nephric duct elongation; IMP:UniProtKB.
GO; GO:0072178; P:nephric duct morphogenesis; IMP:UniProtKB.
GO; GO:0060066; P:oviduct development; IMP:UniProtKB.
GO; GO:0035846; P:oviduct epithelium development; IMP:UniProtKB.
GO; GO:0061205; P:paramesonephric duct development; IMP:UniProtKB.
GO; GO:0007389; P:pattern specification process; IMP:MGI.
GO; GO:2000744; P:positive regulation of anterior head development; IMP:UniProtKB.
GO; GO:0090190; P:positive regulation of branching involved in ureteric bud morphogenesis; IMP:UniProtKB.
GO; GO:0040019; P:positive regulation of embryonic development; IMP:UniProtKB.
GO; GO:2000543; P:positive regulation of gastrulation; IMP:UniProtKB.
GO; GO:2000768; P:positive regulation of nephron tubule epithelial cell differentiation; IMP:UniProtKB.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IMP:UniProtKB.
GO; GO:0009791; P:post-embryonic development; IMP:MGI.
GO; GO:0090009; P:primitive streak formation; IMP:UniProtKB.
GO; GO:0048793; P:pronephros development; IEP:UniProtKB.
GO; GO:0010468; P:regulation of gene expression; IMP:MGI.
GO; GO:0072001; P:renal system development; IGI:MGI.
GO; GO:0072077; P:renal vesicle morphogenesis; IMP:UniProtKB.
GO; GO:0060041; P:retina development in camera-type eye; IEP:UniProtKB.
GO; GO:0010842; P:retina layer formation; IMP:UniProtKB.
GO; GO:0072050; P:S-shaped body morphogenesis; IMP:UniProtKB.
GO; GO:0032525; P:somite rostral/caudal axis specification; IMP:MGI.
GO; GO:0021527; P:spinal cord association neuron differentiation; IGI:UniProtKB.
GO; GO:0021510; P:spinal cord development; IEP:UniProtKB.
GO; GO:0021537; P:telencephalon development; IEP:UniProtKB.
GO; GO:0006366; P:transcription from RNA polymerase II promoter; IDA:UniProtKB.
GO; GO:0001657; P:ureteric bud development; IMP:MGI.
GO; GO:0001655; P:urogenital system development; IMP:MGI.
GO; GO:0035847; P:uterine epithelium development; IMP:UniProtKB.
GO; GO:0060065; P:uterus development; IMP:UniProtKB.
GO; GO:0060068; P:vagina development; IMP:UniProtKB.
GO; GO:0021517; P:ventral spinal cord development; IEP:UniProtKB.
CDD; cd00086; homeodomain; 1.
InterPro; IPR009057; Homeobox-like_sf.
InterPro; IPR017970; Homeobox_CS.
InterPro; IPR001356; Homeobox_dom.
InterPro; IPR001781; Znf_LIM.
Pfam; PF00046; Homeobox; 1.
Pfam; PF00412; LIM; 2.
SMART; SM00389; HOX; 1.
SMART; SM00132; LIM; 2.
SUPFAM; SSF46689; SSF46689; 1.
PROSITE; PS00027; HOMEOBOX_1; 1.
PROSITE; PS50071; HOMEOBOX_2; 1.
PROSITE; PS00478; LIM_DOMAIN_1; 2.
PROSITE; PS50023; LIM_DOMAIN_2; 2.
1: Evidence at protein level;
Complete proteome; Developmental protein; Differentiation;
DNA-binding; Homeobox; LIM domain; Metal-binding; Neurogenesis;
Nucleus; Phosphoprotein; Reference proteome; Repeat; Transcription;
Transcription regulation; Zinc.
CHAIN 1 406 LIM/homeobox protein Lhx1.
/FTId=PRO_0000075771.
DOMAIN 4 54 LIM zinc-binding 1. {ECO:0000255|PROSITE-
ProRule:PRU00125}.
DOMAIN 63 117 LIM zinc-binding 2. {ECO:0000255|PROSITE-
ProRule:PRU00125}.
DNA_BIND 180 239 Homeobox. {ECO:0000255|PROSITE-
ProRule:PRU00108}.
MOD_RES 162 162 Phosphoserine.
{ECO:0000250|UniProtKB:P63007}.
MUTAGEN 28 28 C->G: Disrupts LDB1-binding; when
associated with G-88.
{ECO:0000269|PubMed:8918878}.
MUTAGEN 88 88 C->G: Disrupts LDB1-binding; when
associated with G-28.
{ECO:0000269|PubMed:8918878}.
CONFLICT 12 12 L -> LARQVRPVL (in Ref. 2).
{ECO:0000305}.
CONFLICT 24 31 Missing (in Ref. 2; AAC60669).
{ECO:0000305}.
CONFLICT 236 236 R -> A (in Ref. 2; AAC60669).
{ECO:0000305}.
CONFLICT 335 335 H -> HH (in Ref. 2; AAC60669).
{ECO:0000305}.
SEQUENCE 406 AA; 44780 MW; CC8637984998ADAF CRC64;
MVHCAGCKRP ILDRFLLNVL DRAWHVKCVQ CCECKCNLTE KCFSREGKLY CKNDFFRCFG
TKCAGCAQGI SPSDLVRRAR SKVFHLNCFT CMMCNKQLST GEELYIIDEN KFVCKEDYLS
NSSVAKENSL HSATTGSDPS LSPDSQDPSQ DDAKDSESAN VSDKEGGSNE NDDQNLGAKR
RGPRTTIKAK QLETLKAAFA ATPKPTRHIR EQLAQETGLN MRVIQVWFQN RRSKERRMKQ
LSALGARRHA FFRSPRRMRP LVDRLEPGEL IPNGPFSFYG DYQSEYYGPG GNYDFFPQGP
PSSQAQTPVD LPFVPSSGPS GTPLGGLDHP LPGHHPSSEA QRFTDILAHP PGDSPSPEPS
LPGPLHSMSA EVFGPSPPFS SLSVNGGASY GNHLSHPPEM NEAAVW


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