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Ladybird early (MIP30310p)

 Q7KS77_DROME            Unreviewed;       479 AA.
Q7KS77;
05-JUL-2004, integrated into UniProtKB/TrEMBL.
05-JUL-2004, sequence version 1.
31-JAN-2018, entry version 139.
SubName: Full=Ladybird early {ECO:0000313|EMBL:AAF55896.1};
SubName: Full=MIP30310p {ECO:0000313|EMBL:AEC46889.1};
Name=lbe {ECO:0000313|EMBL:AAF55896.1,
ECO:0000313|FlyBase:FBgn0011278};
Synonyms=Dmel\CG6545 {ECO:0000313|EMBL:AAF55896.1},
Hox11-D125 {ECO:0000313|EMBL:AAF55896.1},
Lb {ECO:0000313|EMBL:AAF55896.1}, lb {ECO:0000313|EMBL:AAF55896.1},
Lbe {ECO:0000313|EMBL:AAF55896.1},
lbe-RA {ECO:0000313|EMBL:AEC46889.1},
NK? {ECO:0000313|EMBL:AAF55896.1};
ORFNames=CG6545 {ECO:0000313|FlyBase:FBgn0011278},
Dmel_CG6545 {ECO:0000313|EMBL:AAF55896.1};
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227 {ECO:0000313|EMBL:AAF55896.1, ECO:0000313|Proteomes:UP000000803};
[1] {ECO:0000313|EMBL:AAF55896.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L.,
Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J.,
Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O.,
Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[2] {ECO:0000313|EMBL:AAF55896.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537568;
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
"Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence.";
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002).
[3] {ECO:0000313|EMBL:AAF55896.1, ECO:0000313|Proteomes:UP000000803}
GENOME REANNOTATION.
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[4] {ECO:0000313|EMBL:AAF55896.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537573;
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M.,
Ashburner M., Celniker S.E.;
"The transposable elements of the Drosophila melanogaster euchromatin:
a genomics perspective.";
Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002).
[5] {ECO:0000313|EMBL:AAF55896.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537574;
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
Karpen G.H.;
"Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly.";
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002).
[6] {ECO:0000313|EMBL:AAF55896.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=16110336; DOI=10.1371/journal.pcbi.0010022;
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
Ashburner M., Anxolabehere D.;
"Combined evidence annotation of transposable elements in genome
sequences.";
PLoS Comput. Biol. 1:166-175(2005).
[7] {ECO:0000313|EMBL:AAF55896.1}
NUCLEOTIDE SEQUENCE.
Berkeley Drosophila Genome Project;
Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R.,
Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E.,
Yu C., Rubin G.;
"Drosophila melanogaster release 4 sequence.";
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
[8] {ECO:0000313|EMBL:AAF55896.1}
NUCLEOTIDE SEQUENCE.
Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S.,
Svirskas R., Rubin G.;
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
[9] {ECO:0000313|EMBL:AAF55896.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569856; DOI=10.1126/science.1139815;
Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
"The Release 5.1 annotation of Drosophila melanogaster
heterochromatin.";
Science 316:1586-1591(2007).
[10] {ECO:0000313|EMBL:AAF55896.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569867; DOI=10.1126/science.1139816;
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
Dimitri P., Karpen G.H., Celniker S.E.;
"Sequence finishing and mapping of Drosophila melanogaster
heterochromatin.";
Science 316:1625-1628(2007).
[11] {ECO:0000313|EMBL:AEC46889.1}
NUCLEOTIDE SEQUENCE.
Carlson J., Booth B., Frise E., Sandler J., Wan K., Yu C.,
Celniker S.;
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases.
[12] {ECO:0000313|EMBL:AAF55896.1}
NUCLEOTIDE SEQUENCE.
FlyBase;
Submitted (DEC-2016) to the EMBL/GenBank/DDBJ databases.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE-
ProRule:PRU00108, ECO:0000256|RuleBase:RU000682,
ECO:0000256|SAAS:SAAS00868163}.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution-NoDerivs License
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EMBL; AE014297; AAF55896.1; -; Genomic_DNA.
EMBL; BT126373; AEC46889.1; -; mRNA.
RefSeq; NP_524435.2; NM_079711.3.
UniGene; Dm.2383; -.
SMR; Q7KS77; -.
IntAct; Q7KS77; 3.
STRING; 7227.FBpp0083490; -.
PaxDb; Q7KS77; -.
EnsemblMetazoa; FBtr0084091; FBpp0083490; FBgn0011278.
GeneID; 42542; -.
KEGG; dme:Dmel_CG6545; -.
UCSC; CG6545-RA; d. melanogaster.
CTD; 42542; -.
FlyBase; FBgn0011278; lbe.
eggNOG; KOG0488; Eukaryota.
eggNOG; ENOG411188D; LUCA.
GeneTree; ENSGT00890000139333; -.
OMA; EDYFQPL; -.
OrthoDB; EOG091G09CY; -.
GenomeRNAi; 42542; -.
Proteomes; UP000000803; Chromosome 3R.
Bgee; FBgn0011278; -.
ExpressionAtlas; Q7KS77; differential.
GO; GO:0005634; C:nucleus; IDA:FlyBase.
GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
GO; GO:0003705; F:transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding; IDA:FlyBase.
GO; GO:0016477; P:cell migration; IGI:FlyBase.
GO; GO:0007417; P:central nervous system development; NAS:FlyBase.
GO; GO:0048813; P:dendrite morphogenesis; IMP:FlyBase.
GO; GO:0008544; P:epidermis development; IMP:FlyBase.
GO; GO:0007483; P:genital disc morphogenesis; IMP:FlyBase.
GO; GO:0007507; P:heart development; TAS:FlyBase.
GO; GO:0007480; P:imaginal disc-derived leg morphogenesis; IGI:FlyBase.
GO; GO:0007501; P:mesodermal cell fate specification; TAS:FlyBase.
GO; GO:0007517; P:muscle organ development; IMP:FlyBase.
GO; GO:0007520; P:myoblast fusion; IGI:FlyBase.
GO; GO:0051450; P:myoblast proliferation; IGI:FlyBase.
GO; GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IEP:FlyBase.
GO; GO:0048666; P:neuron development; IMP:FlyBase.
GO; GO:0042659; P:regulation of cell fate specification; IMP:FlyBase.
GO; GO:1901739; P:regulation of myoblast fusion; IMP:FlyBase.
GO; GO:0045664; P:regulation of neuron differentiation; IMP:FlyBase.
GO; GO:0006355; P:regulation of transcription, DNA-templated; IMP:FlyBase.
GO; GO:0007519; P:skeletal muscle tissue development; IGI:FlyBase.
GO; GO:0007419; P:ventral cord development; IMP:FlyBase.
CDD; cd00086; homeodomain; 1.
InterPro; IPR009057; Homeobox-like_sf.
InterPro; IPR017970; Homeobox_CS.
InterPro; IPR001356; Homeobox_dom.
InterPro; IPR000047; HTH_motif.
Pfam; PF00046; Homeobox; 1.
PRINTS; PR00031; HTHREPRESSR.
SMART; SM00389; HOX; 1.
SUPFAM; SSF46689; SSF46689; 1.
PROSITE; PS00027; HOMEOBOX_1; 1.
PROSITE; PS50071; HOMEOBOX_2; 1.
2: Evidence at transcript level;
Coiled coil {ECO:0000256|SAM:Coils};
Complete proteome {ECO:0000313|Proteomes:UP000000803};
DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00108,
ECO:0000256|RuleBase:RU000682, ECO:0000256|SAAS:SAAS00868168};
Homeobox {ECO:0000256|PROSITE-ProRule:PRU00108,
ECO:0000256|RuleBase:RU000682, ECO:0000256|SAAS:SAAS00868171};
Nucleus {ECO:0000256|PROSITE-ProRule:PRU00108,
ECO:0000256|RuleBase:RU000682, ECO:0000256|SAAS:SAAS00868176};
Reference proteome {ECO:0000313|Proteomes:UP000000803}.
DOMAIN 351 411 Homeobox. {ECO:0000259|PROSITE:PS50071}.
DNA_BIND 353 412 Homeobox. {ECO:0000256|PROSITE-
ProRule:PRU00108}.
COILED 288 308 {ECO:0000256|SAM:Coils}.
COILED 398 418 {ECO:0000256|SAM:Coils}.
SEQUENCE 479 AA; 52207 MW; 5EEE93429B9E87AB CRC64;
MLCPPTMRPA SPAESEISVG GAPSPLPTQH HTHPHSHPHP LQHPRASTID LLQQQQLLMQ
HHAAAAAAAA AAASGLTRSA VGNLPEDYFH PLKRLRMSSS SSEPRDHTPS PPSAVPEPQT
NQTTKSAIEG VKSFSIADIL GHSEKQREES VSPPPNANLL APPASRPIAP SGGLLQPRTE
PLDVHPAAAA AMLLPSGQIV RPWDHLLGPT MPVRPFIPSA LLHYEQRLAL DYHRQLQEHF
NAQAQLLRHM GMNPAIIASE DGSSERSQRS SSSNGSTECC SPRQAEKLEK LTTQEGSEEA
QKKKSEEQPT GSGKSNGDTP LDALFQMTTK DFDESQDKSH LDIFSNRPQP KKKRKSRTAF
TNHQIFELEK RFLYQKYLSP ADRDEIAASL GLSNAQVITW FQNRRAKQKR DIEELKKDFD
SVKVFSAHKS FLENVNDLSI LKKKPMHESD MVGLAAAAAA AGMVVPVPGS VPMGGAPPK


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