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Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic (23S rRNA accumulation protein YCED) (Protein DUF177A)

 YCED1_ARATH             Reviewed;         321 AA.
Q9LT27;
15-MAR-2017, integrated into UniProtKB/Swiss-Prot.
01-OCT-2000, sequence version 1.
05-DEC-2018, entry version 104.
RecName: Full=Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic {ECO:0000305};
AltName: Full=23S rRNA accumulation protein YCED {ECO:0000250|UniProtKB:P0AB28};
AltName: Full=Protein DUF177A {ECO:0000303|PubMed:27574185};
Flags: Precursor;
OrderedLocusNames=At3g19810 {ECO:0000312|Araport:AT3G19810};
ORFNames=MPN9.5 {ECO:0000312|EMBL:BAB01295.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702 {ECO:0000312|EMBL:BAB01295.1};
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10819329; DOI=10.1093/dnares/7.2.131;
Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
features of the regions of 4,504,864 bp covered by sixty P1 and TAC
clones.";
DNA Res. 7:131-135(2000).
[2]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[3] {ECO:0000312|EMBL:ABG48473.1}
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=cv. Columbia;
Kim C.J., Chen H., Quinitio C., Shinn P., Ecker J.R.;
"Arabidopsis ORF clones.";
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
Hayashizaki Y., Shinozaki K.;
"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
Feldmann K.A.;
"Full-length cDNA from Arabidopsis thaliana.";
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
[6]
FUNCTION, DISRUPTION PHENOTYPE, AND SUBCELLULAR LOCATION.
PubMed=27574185; DOI=10.1093/jxb/erw311;
Yang J., Suzuki M., McCarty D.R.;
"Essential role of conserved DUF177A protein in plastid 23S rRNA
accumulation and plant embryogenesis.";
J. Exp. Bot. 67:5447-5460(2016).
-!- FUNCTION: Plays a role in synthesis, processing and/or stability
of 23S rRNA. Required for embryogenesis.
{ECO:0000269|PubMed:27574185}.
-!- SUBCELLULAR LOCATION: Plastid, chloroplast stroma, chloroplast
nucleoid {ECO:0000269|PubMed:27574185}.
-!- DISRUPTION PHENOTYPE: Embryo lethal.
{ECO:0000269|PubMed:27574185}.
-!- SIMILARITY: Belongs to the DUF177 domain family. {ECO:0000305}.
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EMBL; AB025631; BAB01295.1; -; Genomic_DNA.
EMBL; CP002686; AEE76292.1; -; Genomic_DNA.
EMBL; CP002686; ANM65252.1; -; Genomic_DNA.
EMBL; AY088199; AAM65741.1; -; mRNA.
EMBL; BT026117; ABG48473.1; -; mRNA.
EMBL; AK226924; BAE98996.1; -; mRNA.
RefSeq; NP_001327235.1; NM_001338419.1.
RefSeq; NP_566649.1; NM_112871.4.
UniGene; At.19008; -.
UniGene; At.66494; -.
ProteinModelPortal; Q9LT27; -.
STRING; 3702.AT3G19810.1; -.
PaxDb; Q9LT27; -.
EnsemblPlants; AT3G19810.1; AT3G19810.1; AT3G19810.
EnsemblPlants; AT3G19810.2; AT3G19810.2; AT3G19810.
GeneID; 821518; -.
Gramene; AT3G19810.1; AT3G19810.1; AT3G19810.
Gramene; AT3G19810.2; AT3G19810.2; AT3G19810.
KEGG; ath:AT3G19810; -.
Araport; AT3G19810; -.
TAIR; locus:2092266; AT3G19810.
eggNOG; ENOG410IKYX; Eukaryota.
eggNOG; ENOG4111K3C; LUCA.
HOGENOM; HOG000239635; -.
InParanoid; Q9LT27; -.
OMA; CSCNAEK; -.
OrthoDB; EOG09360SNN; -.
PhylomeDB; Q9LT27; -.
PRO; PR:Q9LT27; -.
Proteomes; UP000006548; Chromosome 3.
ExpressionAtlas; Q9LT27; baseline and differential.
GO; GO:0009507; C:chloroplast; IDA:TAIR.
GO; GO:0042644; C:chloroplast nucleoid; IEA:UniProtKB-SubCell.
GO; GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
InterPro; IPR003772; YceD.
Pfam; PF02620; YceD; 1.
2: Evidence at transcript level;
Chloroplast; Complete proteome; Plastid; Reference proteome;
Ribosome biogenesis; Transit peptide.
TRANSIT 1 32 Chloroplast. {ECO:0000255}.
CHAIN 33 321 Large ribosomal RNA subunit accumulation
protein YCED homolog 1, chloroplastic.
/FTId=PRO_0000439065.
COMPBIAS 211 241 Asp-rich. {ECO:0000255|PROSITE-
ProRule:PRU00004}.
SEQUENCE 321 AA; 36051 MW; DE187D93AF09ED7D CRC64;
MSLVCSLSCV APLPQTKQSR PSFLKLETCT LSLSSPAGYP NFTTGIRKHI SYLFTEPIKL
PRLAKSRILV SQESFTETST IDMDWEDQEE IEDTGSPWEG SVMYRRNASV THVEYCTTLE
RLGLGRLSTD VSKKRASAMG LRVTKDVKDY PDGTPVQVSV DVIRKKKKLR LDGIVRTVIT
LGCNRCGEST GESIFSNFSL LLTEEPVEEP DVIDLGFTFG NDKEEGEDDD DNDDSWIDWE
DKLHFPPEVK EIDISKHIRD LVHLEITITA ICDSACKGMC LKCGANLNKR KCDCGREEKD
KGYGPLGNLR EQMQQKEGLR N


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