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Leucine rich repeat kinase 2

 H0WHJ6_OTOGA            Unreviewed;      2486 AA.
H0WHJ6;
22-FEB-2012, integrated into UniProtKB/TrEMBL.
22-FEB-2012, sequence version 1.
05-DEC-2018, entry version 59.
SubName: Full=Leucine rich repeat kinase 2 {ECO:0000313|Ensembl:ENSOGAP00000000845};
Name=LRRK2 {ECO:0000313|Ensembl:ENSOGAP00000000845};
Otolemur garnettii (Small-eared galago) (Garnett's greater bushbaby).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini;
Lorisiformes; Galagidae; Otolemur.
NCBI_TaxID=30611 {ECO:0000313|Ensembl:ENSOGAP00000000845, ECO:0000313|Proteomes:UP000005225};
[1] {ECO:0000313|Ensembl:ENSOGAP00000000845}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
The Broad Institute Genome Sequencing Platform;
Di Palma F., Johnson J., Lander E.S., Lindblad-Toh K., Jaffe D.B.,
Gnerre S., MacCallum I., Przybylski D., Ribeiro F.J., Burton J.N.,
Walker B.J., Sharpe T., Hall G.;
"Version 3 of the genome sequence of Otolemur garnettii (Bushbaby).";
Submitted (MAR-2011) to the EMBL/GenBank/DDBJ databases.
[2] {ECO:0000313|Ensembl:ENSOGAP00000000845}
IDENTIFICATION.
Ensembl;
Submitted (JAN-2012) to UniProtKB.
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EMBL; AAQR03103720; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AAQR03103721; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AAQR03103722; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AAQR03103723; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AAQR03103724; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AAQR03103725; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AAQR03103726; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AAQR03103727; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AAQR03103728; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AAQR03103729; -; NOT_ANNOTATED_CDS; Genomic_DNA.
STRING; 30611.ENSOGAP00000000845; -.
Ensembl; ENSOGAT00000000946; ENSOGAP00000000845; ENSOGAG00000000943.
eggNOG; ENOG410IRBK; Eukaryota.
eggNOG; KOG0192; Eukaryota.
eggNOG; COG1100; LUCA.
eggNOG; COG4886; LUCA.
GeneTree; ENSGT00940000158267; -.
InParanoid; H0WHJ6; -.
OMA; VMLSMLM; -.
OrthoDB; EOG091G003N; -.
TreeFam; TF313679; -.
Proteomes; UP000005225; Unassembled WGS sequence.
GO; GO:0044753; C:amphisome; IEA:Ensembl.
GO; GO:0044754; C:autolysosome; IEA:Ensembl.
GO; GO:0099400; C:caveola neck; IEA:Ensembl.
GO; GO:0032473; C:cytoplasmic side of mitochondrial outer membrane; IEA:Ensembl.
GO; GO:0032839; C:dendrite cytoplasm; IEA:Ensembl.
GO; GO:0070971; C:endoplasmic reticulum exit site; IEA:Ensembl.
GO; GO:0098978; C:glutamatergic synapse; IEA:Ensembl.
GO; GO:0005798; C:Golgi-associated vesicle; IEA:Ensembl.
GO; GO:0030426; C:growth cone; IEA:Ensembl.
GO; GO:0016234; C:inclusion body; IEA:Ensembl.
GO; GO:0005902; C:microvillus; IEA:Ensembl.
GO; GO:0005743; C:mitochondrial inner membrane; IEA:Ensembl.
GO; GO:0005759; C:mitochondrial matrix; IEA:Ensembl.
GO; GO:0097487; C:multivesicular body, internal vesicle; IEA:Ensembl.
GO; GO:0005634; C:nucleus; IEA:Ensembl.
GO; GO:0043204; C:perikaryon; IEA:Ensembl.
GO; GO:0098794; C:postsynapse; IEA:GOC.
GO; GO:0099523; C:presynaptic cytosol; IEA:Ensembl.
GO; GO:1990904; C:ribonucleoprotein complex; IEA:Ensembl.
GO; GO:0008021; C:synaptic vesicle; IEA:Ensembl.
GO; GO:0005802; C:trans-Golgi network; IEA:Ensembl.
GO; GO:1990909; C:Wnt signalosome; IEA:Ensembl.
GO; GO:0003779; F:actin binding; IEA:Ensembl.
GO; GO:0005524; F:ATP binding; IEA:InterPro.
GO; GO:1904713; F:beta-catenin destruction complex binding; IEA:Ensembl.
GO; GO:0030276; F:clathrin binding; IEA:Ensembl.
GO; GO:0005525; F:GTP binding; IEA:Ensembl.
GO; GO:0034211; F:GTP-dependent protein kinase activity; IEA:Ensembl.
GO; GO:0005096; F:GTPase activator activity; IEA:Ensembl.
GO; GO:0003924; F:GTPase activity; IEA:Ensembl.
GO; GO:0044325; F:ion channel binding; IEA:Ensembl.
GO; GO:0004708; F:MAP kinase kinase activity; IEA:Ensembl.
GO; GO:0036479; F:peroxidase inhibitor activity; IEA:Ensembl.
GO; GO:0042803; F:protein homodimerization activity; IEA:Ensembl.
GO; GO:0051018; F:protein kinase A binding; IEA:Ensembl.
GO; GO:0017048; F:Rho GTPase binding; IEA:Ensembl.
GO; GO:0017075; F:syntaxin-1 binding; IEA:Ensembl.
GO; GO:0015631; F:tubulin binding; IEA:Ensembl.
GO; GO:0000186; P:activation of MAPKK activity; IEA:Ensembl.
GO; GO:0019722; P:calcium-mediated signaling; IEA:Ensembl.
GO; GO:1903351; P:cellular response to dopamine; IEA:Ensembl.
GO; GO:0071287; P:cellular response to manganese ion; IEA:Ensembl.
GO; GO:0034599; P:cellular response to oxidative stress; IEA:Ensembl.
GO; GO:0009267; P:cellular response to starvation; IEA:Ensembl.
GO; GO:0008340; P:determination of adult lifespan; IEA:Ensembl.
GO; GO:0006897; P:endocytosis; IEA:Ensembl.
GO; GO:0007029; P:endoplasmic reticulum organization; IEA:Ensembl.
GO; GO:0060079; P:excitatory postsynaptic potential; IEA:Ensembl.
GO; GO:0007030; P:Golgi organization; IEA:Ensembl.
GO; GO:0046039; P:GTP metabolic process; IEA:Ensembl.
GO; GO:0048312; P:intracellular distribution of mitochondria; IEA:Ensembl.
GO; GO:0035641; P:locomotory exploration behavior; IEA:Ensembl.
GO; GO:1902902; P:negative regulation of autophagosome assembly; IEA:Ensembl.
GO; GO:1902236; P:negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway; IEA:Ensembl.
GO; GO:0090394; P:negative regulation of excitatory postsynaptic potential; IEA:Ensembl.
GO; GO:0034260; P:negative regulation of GTPase activity; IEA:Ensembl.
GO; GO:1903206; P:negative regulation of hydrogen peroxide-induced cell death; IEA:Ensembl.
GO; GO:1901215; P:negative regulation of neuron death; IEA:Ensembl.
GO; GO:0032091; P:negative regulation of protein binding; IEA:Ensembl.
GO; GO:0001933; P:negative regulation of protein phosphorylation; IEA:Ensembl.
GO; GO:0010955; P:negative regulation of protein processing; IEA:Ensembl.
GO; GO:1903215; P:negative regulation of protein targeting to mitochondrion; IEA:Ensembl.
GO; GO:1903125; P:negative regulation of thioredoxin peroxidase activity by peptidyl-threonine phosphorylation; IEA:Ensembl.
GO; GO:0007528; P:neuromuscular junction development; IEA:Ensembl.
GO; GO:0070997; P:neuron death; IEA:Ensembl.
GO; GO:0048812; P:neuron projection morphogenesis; IEA:Ensembl.
GO; GO:0018105; P:peptidyl-serine phosphorylation; IEA:Ensembl.
GO; GO:0010508; P:positive regulation of autophagy; IEA:Ensembl.
GO; GO:0090263; P:positive regulation of canonical Wnt signaling pathway; IEA:Ensembl.
GO; GO:0060161; P:positive regulation of dopamine receptor signaling pathway; IEA:Ensembl.
GO; GO:1901727; P:positive regulation of histone deacetylase activity; IEA:Ensembl.
GO; GO:0043068; P:positive regulation of programmed cell death; IEA:Ensembl.
GO; GO:0032436; P:positive regulation of proteasomal ubiquitin-dependent protein catabolic process; IEA:Ensembl.
GO; GO:1902499; P:positive regulation of protein autoubiquitination; IEA:Ensembl.
GO; GO:0032092; P:positive regulation of protein binding; IEA:Ensembl.
GO; GO:0033160; P:positive regulation of protein import into nucleus, translocation; IEA:Ensembl.
GO; GO:0046777; P:protein autophosphorylation; IEA:Ensembl.
GO; GO:0070973; P:protein localization to endoplasmic reticulum exit site; IEA:Ensembl.
GO; GO:0072593; P:reactive oxygen species metabolic process; IEA:Ensembl.
GO; GO:2000172; P:regulation of branching morphogenesis of a nerve; IEA:Ensembl.
GO; GO:1905289; P:regulation of CAMKK-AMPK signaling cascade; IEA:Ensembl.
GO; GO:0061001; P:regulation of dendritic spine morphogenesis; IEA:Ensembl.
GO; GO:0060628; P:regulation of ER to Golgi vesicle-mediated transport; IEA:Ensembl.
GO; GO:0035564; P:regulation of kidney size; IEA:Ensembl.
GO; GO:0040012; P:regulation of locomotion; IEA:Ensembl.
GO; GO:0035751; P:regulation of lysosomal lumen pH; IEA:Ensembl.
GO; GO:0051900; P:regulation of mitochondrial depolarization; IEA:Ensembl.
GO; GO:1902692; P:regulation of neuroblast proliferation; IEA:Ensembl.
GO; GO:0014041; P:regulation of neuron maturation; IEA:Ensembl.
GO; GO:0010738; P:regulation of protein kinase A signaling; IEA:Ensembl.
GO; GO:1905279; P:regulation of retrograde transport, endosome to Golgi; IEA:Ensembl.
GO; GO:0051966; P:regulation of synaptic transmission, glutamatergic; IEA:Ensembl.
GO; GO:1900242; P:regulation of synaptic vesicle endocytosis; IEA:Ensembl.
GO; GO:2000300; P:regulation of synaptic vesicle exocytosis; IEA:Ensembl.
GO; GO:0022028; P:tangential migration from the subventricular zone to the olfactory bulb; IEA:Ensembl.
GO; GO:1904887; P:Wnt signalosome assembly; IEA:Ensembl.
Gene3D; 1.25.10.10; -; 2.
Gene3D; 1.25.40.20; -; 1.
Gene3D; 2.130.10.10; -; 1.
Gene3D; 3.80.10.10; -; 2.
InterPro; IPR036770; Ankyrin_rpt-contain_sf.
InterPro; IPR011989; ARM-like.
InterPro; IPR016024; ARM-type_fold.
InterPro; IPR032171; COR.
InterPro; IPR011009; Kinase-like_dom_sf.
InterPro; IPR001611; Leu-rich_rpt.
InterPro; IPR003591; Leu-rich_rpt_typical-subtyp.
InterPro; IPR032675; LRR_dom_sf.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR000719; Prot_kinase_dom.
InterPro; IPR017441; Protein_kinase_ATP_BS.
InterPro; IPR020859; ROC_dom.
InterPro; IPR008271; Ser/Thr_kinase_AS.
InterPro; IPR005225; Small_GTP-bd_dom.
InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
InterPro; IPR036322; WD40_repeat_dom_sf.
Pfam; PF16095; COR; 1.
Pfam; PF13855; LRR_8; 1.
Pfam; PF00069; Pkinase; 1.
SMART; SM00369; LRR_TYP; 7.
SMART; SM00220; S_TKc; 1.
SUPFAM; SSF48371; SSF48371; 2.
SUPFAM; SSF50978; SSF50978; 1.
SUPFAM; SSF52540; SSF52540; 1.
SUPFAM; SSF56112; SSF56112; 1.
TIGRFAMs; TIGR00231; small_GTP; 1.
PROSITE; PS51450; LRR; 11.
PROSITE; PS00107; PROTEIN_KINASE_ATP; 1.
PROSITE; PS50011; PROTEIN_KINASE_DOM; 1.
PROSITE; PS00108; PROTEIN_KINASE_ST; 1.
PROSITE; PS51424; ROC; 1.
4: Predicted;
Coiled coil {ECO:0000256|SAM:Coils};
Complete proteome {ECO:0000313|Proteomes:UP000005225};
Reference proteome {ECO:0000313|Proteomes:UP000005225}.
DOMAIN 1327 1510 Roc. {ECO:0000259|PROSITE:PS51424}.
DOMAIN 1878 2137 Protein kinase.
{ECO:0000259|PROSITE:PS50011}.
COILED 326 346 {ECO:0000256|SAM:Coils}.
SEQUENCE 2486 AA; 280406 MW; 10E32214A2AAE461 CRC64;
MASGSCQGCE EDEETLKKLI VRLNNVQEGK QIETLVQILE DMLVFTYADY ASTLFQGKNV
HVPLLIVLDS YMRVASVQQA GWSLLCKLIE ICPGTMQSLM GPQDIGNDWE ILGVHQLILK
MLTVHNASIN LSTVGLQALD LLLTSGKITL LILDEESDVF LLIFDAMNTF STNDEIQKLG
CRALHVLFER VSEEQLTEFV ENKDYKVLLS ALNNFPAEEE IVLHVLHCLH SLAIPCNNVE
VLMSGNVRCY NIVVEAMKAF PVSEKIQEVS CCLLHRLTLG NFFNILVLNE VHEFVVKAVQ
QYPENAALQI SALTCLALLT ETIFLNQDLE EKNENQQNDD EEVEQKLFWL DACYKALTGH
RKNKHVQEAA CWALNNLLMY QNSLHEKIGD EDGQFPAHRE VMLSMLMHSS SKEVFQASAN
ALSTLLEQNV NFRKILLSKG IYLNVLELMQ KHLHSPEVAE SGCRMLNHLF EGSNTSVDTM
AAVVPKIITV MKSHETSPSV QLEALRAVLH FIVPGMPEES REDTESQRKL TMVRKQCFRN
DIHKLVLAAL NRFIGNPGIQ KCGLKVISSL APFPEALAML SLEGAVDSVL HTLQMYPDDQ
EVQCLGLSLI GCLITKKNLC IGTGHLLAKL LVSSLQRFKD VAEVQTKGFQ TILAILEVSS
SFSRLLVQYS LDSVIFHHLS SSTTEQKDHQ FINLCCNCFA KLAMDDELKN LMLEKACDQN
NSIMVECLLL LGADANQAKE MSLICQVCEK ESSPKLVELL LNSGSREQDV RRALTISIGK
GDSQIISLLL RRLALDLANN SICLGGFCIG KIEPSWLGPL FPDRTSNLRK QTNIGSTLAR
MVLRHQMRSS VEEGAASESD RNFPEDVLDK LDEWTFIPDS SMDSVFAQSD DLDSEGSEGS
FLVKKKSNSI SVGEFYRDHA LQRCSPNLQR HSNSLGPVFD NEDLLRRKRK ILSSDDSLRS
SKLQSHMRQS DSMSSLASER EYITSLDLSA NELRDIDALS HKCCLSGHLE HLEKLELHQN
ALASFPPQLC ETLKCLTHLD LHSNKFTSFP SYLLKMNCIT NLDVSRNDIG PSVVLDPAVK
CSTLKQFNLS YNQLSSVPEN LADVIEKLEL LVLEGNKISE ISSPLSLKEL KILNLNKNHI
SSLSENFLEA CPKVESFSAR MNFLAAMPFL PSSMTSLKLS QNKFTCVPEA ILNLPHLRSL
DMSNNDIQYL PGPVHWKSLN LRELLFSYNQ ISILDLSEKA HAWSRVEKLH LSHNKLKEIP
PEIGCLENLT SLDVSYNLEL RSFPNEMGKL SKIWDLPLDE LRLNFDFKHV GCKAKDIIRF
LQQRLKKAVP YNRMKLMIVG NTGSGKTTLL QQLMKTKKSD LGMQSATVGI DVKDWPIQIR
GKKKKDLILN VWDFAGREEF YSTHPHFMTQ RALYLAVYDL SKGQAEVDAM KPWLFNIKAR
ASSSPVILVG THLDVSDEKQ RKACITKINK ELLNKRGFPA IRDYHFVNAT EESDALAKLR
KTIINESLNF KIRDQPVVGQ LIPDCYVELE KIILSERKHV PIEFPVIDRK RLLQLVRESQ
LQLDENELPH AVHFLNESGV LLHFQDPALQ LSDLYFVEPK WLCKIMAQIL TVKVEGYPKH
PKGIISRRDV EKFLSKKRRF PKNYMSQYFK LLEKFQIALP TGEEHLLVPS SLSEHRPVIE
LPHCENSEII IRLYEMPYFP MGFWSRLISR LLEISPYMLS GRERALRPNR MYWRQGIYLN
WSPEAYCLVG SEVLDNHSES FLKITVPSCR KGCILLGQVV DHIDSLMEEW FPGLLEIDIC
GEGETLLKKW ALYSFNDGEE HQKILLDDLM KKAEEGDLLI NPDQPRLTIP ISQIAPDLIL
ADLPRNIMLN NDELEFEQAP EFLLGDGSFG SVYRAAYEGE EVAVKIFNKH TSLRLLRQEL
VVLCHLHHPS LISLLAAGIR PRMLVMELAS KGSLDRLLQQ DKGSLTRTLQ HRIALHVADG
LRYLHSAMII YRDLKPHNVL LFTLYPNAAI IAKIADYGIA QYCCRMGIKT SEGTPGFRAP
EVARGNVIYN QQADVYSFGL LLYDILTTGG RIVEGLKFPN EFDELAIQGK LPDPVKEYGC
APWPTVEKLI KMCLKENPQE RPTSAQVFDM LNSAELICLM RRILLPKSFI AECMAATPTN
SKNASIWLGC GHRDKGQLSC LDLNTEGHTS EEVTDSRILC LALVHLPVEK ESWIVCGTQS
GTLLVINNED GKKRHTLERM TDSITCLHCN SFSKQSKQKN FLLVGTADGN LAIFEDKTVK
FKGAAPLKIL NIGSVSTPLM CLSESTNSTE KTMMWGGCGT KIFSFSNDFT IQKLIETRTN
QLFAYAAFSD SNIRAVVADT VLYIAKKNSP VVEVWDKKTE KLCELIDCVH FLKEEMVKVS
KESKHKMCYS GRVKTLCLQK NTALWIGTGG GHILLLDLST RRIIRIIYNF CDSVRVMMTA
QLGNLKNAVL VLGYNRKSSE GTQHQK


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