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Leucine-rich repeat kinase, isoform D (EC 2.7.11.-)

 A0A0B4KHT3_DROME        Unreviewed;      2513 AA.
A0A0B4KHT3;
01-APR-2015, integrated into UniProtKB/TrEMBL.
01-APR-2015, sequence version 1.
12-SEP-2018, entry version 35.
SubName: Full=Leucine-rich repeat kinase, isoform D {ECO:0000313|EMBL:AGB96152.1};
EC=2.7.11.- {ECO:0000313|EMBL:AGB96152.1};
Name=Lrrk {ECO:0000313|EMBL:AGB96152.1,
ECO:0000313|FlyBase:FBgn0038816};
Synonyms=CG5483 {ECO:0000313|EMBL:AGB96152.1},
CT17358 {ECO:0000313|EMBL:AGB96152.1},
dLRRK {ECO:0000313|EMBL:AGB96152.1},
dLrrk {ECO:0000313|EMBL:AGB96152.1},
dLRRK2 {ECO:0000313|EMBL:AGB96152.1},
Dmel\CG5483 {ECO:0000313|EMBL:AGB96152.1},
LRRK {ECO:0000313|EMBL:AGB96152.1},
lrrk {ECO:0000313|EMBL:AGB96152.1},
LRRK2 {ECO:0000313|EMBL:AGB96152.1};
ORFNames=CG5483 {ECO:0000313|FlyBase:FBgn0038816},
Dmel_CG5483 {ECO:0000313|EMBL:AGB96152.1};
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227 {ECO:0000313|EMBL:AGB96152.1, ECO:0000313|Proteomes:UP000000803};
[1] {ECO:0000313|EMBL:AGB96152.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L.,
Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J.,
Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O.,
Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[2] {ECO:0000313|EMBL:AGB96152.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537568;
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
"Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence.";
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002).
[3] {ECO:0000313|EMBL:AGB96152.1, ECO:0000313|Proteomes:UP000000803}
GENOME REANNOTATION.
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[4] {ECO:0000313|EMBL:AGB96152.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537573;
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M.,
Ashburner M., Celniker S.E.;
"The transposable elements of the Drosophila melanogaster euchromatin:
a genomics perspective.";
Genome Biol. 3:RESEARCH0084-RESEARCH0084(2002).
[5] {ECO:0000313|EMBL:AGB96152.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537574;
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
Karpen G.H.;
"Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly.";
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002).
[6] {ECO:0000313|EMBL:AGB96152.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=16110336; DOI=10.1371/journal.pcbi.0010022;
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
Ashburner M., Anxolabehere D.;
"Combined evidence annotation of transposable elements in genome
sequences.";
PLoS Comput. Biol. 1:166-175(2005).
[7] {ECO:0000313|EMBL:AGB96152.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569856; DOI=10.1126/science.1139815;
Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
"The Release 5.1 annotation of Drosophila melanogaster
heterochromatin.";
Science 316:1586-1591(2007).
[8] {ECO:0000313|EMBL:AGB96152.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569867; DOI=10.1126/science.1139816;
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
Dimitri P., Karpen G.H., Celniker S.E.;
"Sequence finishing and mapping of Drosophila melanogaster
heterochromatin.";
Science 316:1625-1628(2007).
-----------------------------------------------------------------------
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EMBL; AE014297; AGB96152.1; -; Genomic_DNA.
RefSeq; NP_001262772.1; NM_001275843.1.
UniGene; Dm.24081; -.
EnsemblMetazoa; FBtr0334641; FBpp0306703; FBgn0038816.
GeneID; 42447; -.
CTD; 42447; -.
FlyBase; FBgn0038816; Lrrk.
eggNOG; KOG0192; Eukaryota.
eggNOG; KOG0504; Eukaryota.
eggNOG; KOG0619; Eukaryota.
eggNOG; COG4886; LUCA.
GeneTree; ENSGT00910000144054; -.
OrthoDB; EOG091G00WM; -.
GenomeRNAi; 42447; -.
Proteomes; UP000000803; Chromosome 3R.
ExpressionAtlas; A0A0B4KHT3; baseline and differential.
GO; GO:0044297; C:cell body; IDA:FlyBase.
GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
GO; GO:0005829; C:cytosol; IEA:GOC.
GO; GO:1990033; C:dendritic branch point; IDA:FlyBase.
GO; GO:0043198; C:dendritic shaft; IDA:FlyBase.
GO; GO:0005795; C:Golgi stack; IDA:FlyBase.
GO; GO:0031902; C:late endosome membrane; IDA:FlyBase.
GO; GO:0005765; C:lysosomal membrane; IDA:FlyBase.
GO; GO:0071212; C:subsynaptic reticulum; IDA:FlyBase.
GO; GO:0043195; C:terminal bouton; IDA:FlyBase.
GO; GO:0005524; F:ATP binding; IEA:InterPro.
GO; GO:0004672; F:protein kinase activity; IDA:FlyBase.
GO; GO:0004674; F:protein serine/threonine kinase activity; IDA:FlyBase.
GO; GO:0017137; F:Rab GTPase binding; IPI:FlyBase.
GO; GO:0006914; P:autophagy; IMP:FlyBase.
GO; GO:0008088; P:axo-dendritic transport; IMP:FlyBase.
GO; GO:0051683; P:establishment of Golgi localization; IMP:FlyBase.
GO; GO:0035556; P:intracellular signal transduction; IBA:GO_Central.
GO; GO:0040011; P:locomotion; IMP:FlyBase.
GO; GO:0032418; P:lysosome localization; IMP:FlyBase.
GO; GO:0050774; P:negative regulation of dendrite morphogenesis; IMP:FlyBase.
GO; GO:1901215; P:negative regulation of neuron death; IMP:FlyBase.
GO; GO:0018105; P:peptidyl-serine phosphorylation; IDA:FlyBase.
GO; GO:1900242; P:regulation of synaptic vesicle endocytosis; IMP:FlyBase.
GO; GO:0042147; P:retrograde transport, endosome to Golgi; IGI:FlyBase.
GO; GO:0050808; P:synapse organization; IMP:FlyBase.
GO; GO:0048488; P:synaptic vesicle endocytosis; IGI:FlyBase.
CDD; cd00204; ANK; 2.
Gene3D; 1.25.40.20; -; 2.
Gene3D; 3.80.10.10; -; 3.
InterPro; IPR002110; Ankyrin_rpt.
InterPro; IPR020683; Ankyrin_rpt-contain_dom.
InterPro; IPR036770; Ankyrin_rpt-contain_sf.
InterPro; IPR032171; COR.
InterPro; IPR011009; Kinase-like_dom_sf.
InterPro; IPR001611; Leu-rich_rpt.
InterPro; IPR003591; Leu-rich_rpt_typical-subtyp.
InterPro; IPR032675; LRR_dom_sf.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR000719; Prot_kinase_dom.
InterPro; IPR017441; Protein_kinase_ATP_BS.
InterPro; IPR011047; Quinoprotein_ADH-like_supfam.
InterPro; IPR020859; ROC_dom.
InterPro; IPR008271; Ser/Thr_kinase_AS.
Pfam; PF00023; Ank; 1.
Pfam; PF12796; Ank_2; 1.
Pfam; PF16095; COR; 1.
Pfam; PF13855; LRR_8; 1.
Pfam; PF00069; Pkinase; 1.
SMART; SM00248; ANK; 5.
SMART; SM00369; LRR_TYP; 9.
SMART; SM00220; S_TKc; 1.
SUPFAM; SSF48403; SSF48403; 2.
SUPFAM; SSF50998; SSF50998; 1.
SUPFAM; SSF52540; SSF52540; 2.
SUPFAM; SSF56112; SSF56112; 2.
PROSITE; PS50297; ANK_REP_REGION; 2.
PROSITE; PS50088; ANK_REPEAT; 1.
PROSITE; PS51450; LRR; 11.
PROSITE; PS00107; PROTEIN_KINASE_ATP; 1.
PROSITE; PS50011; PROTEIN_KINASE_DOM; 1.
PROSITE; PS00108; PROTEIN_KINASE_ST; 1.
PROSITE; PS51424; ROC; 1.
4: Predicted;
ANK repeat {ECO:0000256|PROSITE-ProRule:PRU00023};
Complete proteome {ECO:0000313|Proteomes:UP000000803};
Kinase {ECO:0000313|EMBL:AGB96152.1};
Reference proteome {ECO:0000313|Proteomes:UP000000803};
Transferase {ECO:0000313|EMBL:AGB96152.1}.
DOMAIN 144 233 ANK_REP_REGION.
{ECO:0000259|PROSITE:PS50297}.
REPEAT 359 391 ANK. {ECO:0000256|PROSITE-
ProRule:PRU00023}.
DOMAIN 359 391 ANK_REP_REGION.
{ECO:0000259|PROSITE:PS50297}.
DOMAIN 987 1215 Roc. {ECO:0000259|PROSITE:PS51424}.
DOMAIN 1796 2102 Protein kinase.
{ECO:0000259|PROSITE:PS50011}.
SEQUENCE 2513 AA; 279029 MW; 793927BFD2081FF4 CRC64;
MSDSDEARAQ GDIGAMEVGA QKLFSNSHPP QKQLVQPLDH PTPTKRQIKT NATHSPNATF
LNKCNSCRAS WAPTCAVRHK TAWINDHKNV AIDFPQFNAR EEVRQIKHGE LRTAVISGDE
RTVRVLLAAL GTERQIIVNM APSGANTLLF LACQSGYESI TQRLLDAGAD GRSHAVTKYS
PLYAAVHSGH LGIARLMLDH FPELIQQPTV ERWLPLHAAC INGHIKLLEL LISYSYPDYL
YQTYRDEEGQ WEWRLPFDAN AHDVTGQTSL YIASILGNKQ LVGVLLKWQL HCRRTLGDSA
SSVSTPITPT RKRISFGIQA IMSKLHISGE SEGPDDLASQ ESTECQRCPI NVNLLCGAAR
ETALLAAVRG GHLDVVQSLL QHGANPNIVA KPVEDHNDPK CCEEIYGLSN VPIAEACKQR
SLAMLDLLLK HGARDDNGTA IGMAITCGDE AILSRLLARR VHPDSDYKIN KKGLPTPVEV
NVFLPSTSNI SYSAMFPNNP TIIDWHSMGS SVQLSVVRVP WMVSGVLLLN PKLQSHPRLN
EVALTAITRI DFSHNVLTSI PQELFHLVSL RYLNVAQNKI TDLPAPIGQT YGCPVLDELF
LQDNQLTTLP AAIFHLPALS ILDVSNNKLQ QLPFDLWRAP KLRELNVAFN LLRDLPVPPM
QTSSSLLSLD KLNLQSFEEP PSNKPRNVTQ QRLTHRNLWS ATLDITDNDM KWQHEQDLGD
GKTAGVGSSQ LSSLNIANNL FTSIPAALPC LAVNLTRLNM SYNSLRSMGH VTSYPATLKQ
LDLSHNEISC WPSLPRITES DPHLLCYSCV QLPEGRDDDY KTASSKGSSS SATSFRASVL
KSVCRHRRHL RLEALRTLIL ADNLLTRIQL STDDATTLFN ESEDADWSVV GVNRSKVIFP
NLSMLDMTNN CLKEIPASLH ELSSLSVLNI SGNVNITELP PHLGLLSRLW NLNTRGCLLQ
EPLRSMIESK KHKTMDIVGY LKSIYEDAQP YARMKLMVVG VAGIGKSTLL DLLRQGAGSG
SSSSSHRSRA SENHWAKRMG HARSTSRSHR HSSASSANIS TVGVDIGTWI CEKRKRAPGS
HGPVVFRTWD FGGQKEYYAT HQYFLSKRSL YLVLWRISDG HKGLAELLQW LGNIQARAPN
SPVIIVGTHF DAVGESISPQ KAEQLQQLIR EKFIAIPDAE KIGLPRVIDS IEISCRTLHN
IHLLANIIYD TAMQLRSPGS KEPMLLQKIP ASYIALEDIV NVIACNLRAA GRDPVLDGEQ
YKRLVTEQMR LHNYKSFRDA AELQQATTWC HENGVLLHYD DATLRDYYFL DPQWLCDMLA
HVVTVREINP FAPTGVMKLD DLQMLFRSVQ VQGNGNRSYI VSLLNKFEVA LTWDSRTLLI
PSLLPSQEAA TPNSGSTVKL SQRSRGRSLG CSVSQEVNLN NLIYEQRSAP SSSSSSASVS
QGLRRILLMT YFPSGFWSRL ITRILADEQI IEAIRGVYMA SQDYADFDLR TSLEQDTQWN
LWQTGLALYY GPILIFKIWE VPFQKTERTQ PFRTDGNRFK LKQDGIWSDV NLSSSSILEV
YFPLYEVNIS QEVDDNERQL LAEIRPHMSQ VAKLLALTVD HIDLLLEDWY PSLGTRFVHT
SEGRFLITRL VLCPRCLWKL QLQQNNEPSD REVPPVGCNR PSRSSRRGAG AYFLHGVGDP
GEDGALNVFS AYLNATARRE RRSEDSLGAG SDADSGVGPD SAGSSRNTSV DGHPGYHLPD
NSNVCYAWMI EECILSVYNQ SKISCPVHLE QSMAQLAPDV IFADIPDKHT IPSECIIKGS
LLGRGAFGFV FKANCKVRGA RSFKPVAMKM LQPVPPGARA KESALMAFKV AVGKWDRDPL
QHSCKAYCTA RQELAVLLTL KHPNIVPLVG ICIKPLALVL ELAPLGGLDA LLRHYRRSGA
HMGPHTFQTL VLQAARAIEY LHRRRIIYRD LKSENVLVWE LPQPHTEDSP RNLVHIKIAD
YGISRQTAPS GAKGFGGTEG FMAPEIIRYN GEEEYTEKVD CFSFGMFIYE NISLRQPFEG
HESIKECILE GSRPALTQRE TQFPTCCLDL MVLCWHEQPR RRPTASQIVS ILSAPECIHL
LDVVAMPHSE KIVCGVFQSL VGMGDDERCG LELWLPSFGS RIDILDCSPS GSLLQCNSIS
CSPQPQVAPP KTPENGANSR ARSAQRLPKM NMLCCCLVGE AIWMGDVSGN LHAYSTSTYA
HLFSYMLDPN IKSAVISLVY MEKIARVAVG THNGRVFLVD ATQMPSNCAF AEGSFVLTEI
CSGFVLHAAC SVVVDGIYEL WCGEIAGKIN VFPLNENGVS GHQALCHSEE PNLIEDVKVA
RMCSNESHVF SCLYPGCMVY QWDVISKRIE NKLDCSKLLP CSESLQSIAI DEHVNLIKCQ
ISALAAHNSE LYIGTTWGCL IVAELHTLRP ISVFRPYENE IKSIITLSKD NVPLIATIGR
RYRSLISRYV DSAESSTKSS AVSTPTHGAA KSVPPADVDN HIHCLLWRAK HWT


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