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Leukocyte surface antigen CD53 (Cell surface glycoprotein CD53) (CD antigen CD53)

 CD53_BOVIN              Reviewed;         219 AA.
Q58DM3;
30-MAY-2006, integrated into UniProtKB/Swiss-Prot.
26-APR-2005, sequence version 1.
22-NOV-2017, entry version 77.
RecName: Full=Leukocyte surface antigen CD53;
AltName: Full=Cell surface glycoprotein CD53;
AltName: CD_antigen=CD53;
Name=CD53;
Bos taurus (Bovine).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia;
Pecora; Bovidae; Bovinae; Bos.
NCBI_TaxID=9913;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
PubMed=16305752; DOI=10.1186/1471-2164-6-166;
Harhay G.P., Sonstegard T.S., Keele J.W., Heaton M.P., Clawson M.L.,
Snelling W.M., Wiedmann R.T., Van Tassell C.P., Smith T.P.L.;
"Characterization of 954 bovine full-CDS cDNA sequences.";
BMC Genomics 6:166-166(2005).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=Hereford; TISSUE=Uterus;
NIH - Mammalian Gene Collection (MGC) project;
Submitted (FEB-2006) to the EMBL/GenBank/DDBJ databases.
-!- FUNCTION: Required for efficient formation of myofibers in
regenerating muscle at the level of cell fusion. May be involved
in growth regulation in hematopoietic cells (By similarity).
{ECO:0000250}.
-!- SUBUNIT: Interacts with SCIMP. {ECO:0000250}.
-!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000250}. Cell junction
{ECO:0000250}. Membrane {ECO:0000250}; Multi-pass membrane protein
{ECO:0000250}. Note=Concentrates in localized microdomains along
the plasma membrane at the contact sites between cells of fused
myotubes. {ECO:0000250}.
-!- SIMILARITY: Belongs to the tetraspanin (TM4SF) family.
{ECO:0000305}.
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EMBL; BT021574; AAX46421.1; -; mRNA.
EMBL; BC113322; AAI13323.1; -; mRNA.
RefSeq; NP_001029404.1; NM_001034232.2.
UniGene; Bt.14005; -.
STRING; 9913.ENSBTAP00000008479; -.
PaxDb; Q58DM3; -.
PRIDE; Q58DM3; -.
Ensembl; ENSBTAT00000008479; ENSBTAP00000008479; ENSBTAG00000006466.
GeneID; 505040; -.
KEGG; bta:505040; -.
CTD; 963; -.
eggNOG; KOG3882; Eukaryota.
eggNOG; ENOG4111IRY; LUCA.
GeneTree; ENSGT00880000137858; -.
HOGENOM; HOG000230651; -.
HOVERGEN; HBG002324; -.
InParanoid; Q58DM3; -.
KO; K06489; -.
OMA; VCVIQVL; -.
OrthoDB; EOG091G0CQO; -.
TreeFam; TF352892; -.
Reactome; R-BTA-6798695; Neutrophil degranulation.
Proteomes; UP000009136; Chromosome 3.
Bgee; ENSBTAG00000006466; -.
GO; GO:0005911; C:cell-cell junction; ISS:UniProtKB.
GO; GO:0070062; C:extracellular exosome; IEA:Ensembl.
GO; GO:0001772; C:immunological synapse; IEA:Ensembl.
GO; GO:0005887; C:integral component of plasma membrane; IBA:GO_Central.
GO; GO:0005886; C:plasma membrane; ISS:UniProtKB.
GO; GO:0007166; P:cell surface receptor signaling pathway; IBA:GO_Central.
GO; GO:1901741; P:positive regulation of myoblast fusion; ISS:UniProtKB.
Gene3D; 1.10.1450.10; -; 1.
InterPro; IPR000301; Tetraspanin.
InterPro; IPR018499; Tetraspanin/Peripherin.
InterPro; IPR018503; Tetraspanin_CS.
InterPro; IPR008952; Tetraspanin_EC2_sf.
Pfam; PF00335; Tetraspannin; 1.
PIRSF; PIRSF002419; Tetraspanin; 1.
PRINTS; PR00259; TMFOUR.
SUPFAM; SSF48652; SSF48652; 1.
PROSITE; PS00421; TM4_1; 1.
2: Evidence at transcript level;
Cell junction; Cell membrane; Complete proteome; Glycoprotein;
Membrane; Reference proteome; Transmembrane; Transmembrane helix.
CHAIN 1 219 Leukocyte surface antigen CD53.
/FTId=PRO_0000237572.
TOPO_DOM 1 11 Cytoplasmic. {ECO:0000255}.
TRANSMEM 12 32 Helical. {ECO:0000255}.
TOPO_DOM 33 54 Extracellular. {ECO:0000255}.
TRANSMEM 55 69 Helical. {ECO:0000255}.
TOPO_DOM 70 80 Cytoplasmic. {ECO:0000255}.
TRANSMEM 81 106 Helical. {ECO:0000255}.
TOPO_DOM 107 181 Extracellular. {ECO:0000255}.
TRANSMEM 182 206 Helical. {ECO:0000255}.
TOPO_DOM 207 219 Cytoplasmic. {ECO:0000255}.
CARBOHYD 129 129 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 148 148 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
SEQUENCE 219 AA; 24103 MW; B3FFEBDB8281946C CRC64;
MGMSSLKLLK FVLFFFNLIF WFCGCCILGL GIYLLIHSKF GVLFHNLPSL TLGNVLVIVG
SVIMVVAFLG CMGSIKENKC LLMSFFVLLL IILLAEVTLA ILLFVYEQKL KEYVAEGLTE
SIQRYNSDNS TKAAWDSIQS FLQCCGVNGT SDWTSGPPAS CPKGSAVKGC YIQAKQWFHS
NFLYIGITTI CVCVIQVLGM SFALTLNCQI DKTSQVLGL


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