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Lymphiod enhancer binding factor 1 (Lymphoid enhancer binding factor 1) (Transcription factor LEF-1)

 O93345_CHICK            Unreviewed;       369 AA.
O93345;
01-NOV-1998, integrated into UniProtKB/TrEMBL.
01-NOV-1998, sequence version 1.
25-OCT-2017, entry version 129.
SubName: Full=Lymphiod enhancer binding factor 1 {ECO:0000313|EMBL:BAE78809.1};
SubName: Full=Lymphoid enhancer binding factor 1 {ECO:0000313|Ensembl:ENSGALP00000050823};
SubName: Full=Transcription factor LEF-1 {ECO:0000313|EMBL:AAC24524.1};
Name=Lef-1 {ECO:0000313|EMBL:AAC24524.1};
Synonyms=LEF-1 {ECO:0000313|EMBL:BAE78809.1},
LEF1 {ECO:0000313|Ensembl:ENSGALP00000050823};
Gallus gallus (Chicken).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
Phasianidae; Phasianinae; Gallus.
NCBI_TaxID=9031;
[1] {ECO:0000313|EMBL:AAC24524.1}
NUCLEOTIDE SEQUENCE.
PubMed=9596583; DOI=10.1126/science.280.5367.1274;
Kengaku M., Capdevila J., Rodriguez-Esteban C., De La Pena J.,
Johnson R.L., Belmonte J.C., Tabin C.J.;
"Distinct WNT pathways regulating AER formation and dorsoventral
polarity in the chick limb bud.";
Science 280:1274-1277(1998).
[2] {ECO:0000313|Ensembl:ENSGALP00000050823, ECO:0000313|Proteomes:UP000000539}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Red jungle fowl {ECO:0000313|Ensembl:ENSGALP00000050823,
ECO:0000313|Proteomes:UP000000539};
PubMed=15592404; DOI=10.1038/nature03154;
International Chicken Genome Sequencing Consortium;
Hillier L.W., Miller W., Birney E., Warren W., Hardison R.C.,
Ponting C.P., Bork P., Burt D.W., Groenen M.A.M., Delany M.E.,
Dodgson J.B., Chinwalla A.T., Cliften P.F., Clifton S.W.,
Delehaunty K.D., Fronick C., Fulton R.S., Graves T.A., Kremitzki C.,
Layman D., Magrini V., McPherson J.D., Miner T.L., Minx P., Nash W.E.,
Nhan M.N., Nelson J.O., Oddy L.G., Pohl C.S., Randall-Maher J.,
Smith S.M., Wallis J.W., Yang S.-P., Romanov M.N., Rondelli C.M.,
Paton B., Smith J., Morrice D., Daniels L., Tempest H.G.,
Robertson L., Masabanda J.S., Griffin D.K., Vignal A., Fillon V.,
Jacobbson L., Kerje S., Andersson L., Crooijmans R.P., Aerts J.,
van der Poel J.J., Ellegren H., Caldwell R.B., Hubbard S.J.,
Grafham D.V., Kierzek A.M., McLaren S.R., Overton I.M., Arakawa H.,
Beattie K.J., Bezzubov Y., Boardman P.E., Bonfield J.K.,
Croning M.D.R., Davies R.M., Francis M.D., Humphray S.J., Scott C.E.,
Taylor R.G., Tickle C., Brown W.R.A., Rogers J., Buerstedde J.-M.,
Wilson S.A., Stubbs L., Ovcharenko I., Gordon L., Lucas S.,
Miller M.M., Inoko H., Shiina T., Kaufman J., Salomonsen J.,
Skjoedt K., Wong G.K.-S., Wang J., Liu B., Wang J., Yu J., Yang H.,
Nefedov M., Koriabine M., Dejong P.J., Goodstadt L., Webber C.,
Dickens N.J., Letunic I., Suyama M., Torrents D., von Mering C.,
Zdobnov E.M., Makova K., Nekrutenko A., Elnitski L., Eswara P.,
King D.C., Yang S.-P., Tyekucheva S., Radakrishnan A., Harris R.S.,
Chiaromonte F., Taylor J., He J., Rijnkels M., Griffiths-Jones S.,
Ureta-Vidal A., Hoffman M.M., Severin J., Searle S.M.J., Law A.S.,
Speed D., Waddington D., Cheng Z., Tuzun E., Eichler E., Bao Z.,
Flicek P., Shteynberg D.D., Brent M.R., Bye J.M., Huckle E.J.,
Chatterji S., Dewey C., Pachter L., Kouranov A., Mourelatos Z.,
Hatzigeorgiou A.G., Paterson A.H., Ivarie R., Brandstrom M.,
Axelsson E., Backstrom N., Berlin S., Webster M.T., Pourquie O.,
Reymond A., Ucla C., Antonarakis S.E., Long M., Emerson J.J.,
Betran E., Dupanloup I., Kaessmann H., Hinrichs A.S., Bejerano G.,
Furey T.S., Harte R.A., Raney B., Siepel A., Kent W.J., Haussler D.,
Eyras E., Castelo R., Abril J.F., Castellano S., Camara F., Parra G.,
Guigo R., Bourque G., Tesler G., Pevzner P.A., Smit A., Fulton L.A.,
Mardis E.R., Wilson R.K.;
"Sequence and comparative analysis of the chicken genome provide
unique perspectives on vertebrate evolution.";
Nature 432:695-716(2004).
[3] {ECO:0000313|EMBL:BAE78809.1}
NUCLEOTIDE SEQUENCE.
TISSUE=Whole embryo {ECO:0000313|EMBL:BAE78809.1};
PubMed=16544192; DOI=10.1007/s10577-006-1035-8;
Kuraku S., Ishijima J., Nishida-Umehara C., Agata K., Kuratani S.,
Matsuda Y.;
"cDNA-based gene mapping and GC3 profiling in the soft-shelled turtle
suggest a chromosomal size-dependent GC bias shared by sauropsids.";
Chromosome Res. 14:187-202(2006).
[4] {ECO:0000313|Ensembl:ENSGALP00000050823}
IDENTIFICATION.
STRAIN=Red jungle fowl {ECO:0000313|Ensembl:ENSGALP00000050823};
Ensembl;
Submitted (OCT-2016) to UniProtKB.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution-NoDerivs License
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EMBL; AADN04000021; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AF064462; AAC24524.1; -; mRNA.
EMBL; AB188385; BAE78809.1; -; mRNA.
RefSeq; NP_990344.1; NM_205013.2.
UniGene; Gga.2694; -.
STRING; 9031.ENSGALP00000017123; -.
Ensembl; ENSGALT00000054579; ENSGALP00000050823; ENSGALG00000031960.
GeneID; 395865; -.
KEGG; gga:395865; -.
CTD; 51176; -.
eggNOG; KOG3248; Eukaryota.
eggNOG; ENOG41109RU; LUCA.
GeneTree; ENSGT00390000009964; -.
HOGENOM; HOG000116032; -.
HOVERGEN; HBG000419; -.
KO; K04492; -.
OMA; QESYHDK; -.
OrthoDB; EOG091G0705; -.
TreeFam; TF318448; -.
Reactome; R-GGA-201722; Formation of the beta-catenin:TCF transactivating complex.
Reactome; R-GGA-3769402; Deactivation of the beta-catenin transactivating complex.
Reactome; R-GGA-4086398; Ca2+ pathway.
Reactome; R-GGA-4641265; Repression of WNT target genes.
Proteomes; UP000000539; Chromosome 4.
Bgee; ENSGALG00000010529; -.
GO; GO:1990907; C:beta-catenin-TCF complex; IEA:Ensembl.
GO; GO:0005737; C:cytoplasm; IDA:AgBase.
GO; GO:0005634; C:nucleus; IDA:AgBase.
GO; GO:0032993; C:protein-DNA complex; IEA:Ensembl.
GO; GO:0005667; C:transcription factor complex; ISS:AgBase.
GO; GO:0070016; F:armadillo repeat domain binding; IBA:GO_Central.
GO; GO:0008013; F:beta-catenin binding; IBA:GO_Central.
GO; GO:0070742; F:C2H2 zinc finger domain binding; IEA:Ensembl.
GO; GO:0003682; F:chromatin binding; ISS:AgBase.
GO; GO:0043027; F:cysteine-type endopeptidase inhibitor activity involved in apoptotic process; IEA:Ensembl.
GO; GO:0003677; F:DNA binding; ISS:AgBase.
GO; GO:0008301; F:DNA binding, bending; ISS:AgBase.
GO; GO:0035326; F:enhancer binding; IBA:GO_Central.
GO; GO:0030284; F:estrogen receptor activity; IEA:Ensembl.
GO; GO:0030331; F:estrogen receptor binding; IBA:GO_Central.
GO; GO:0045295; F:gamma-catenin binding; IBA:GO_Central.
GO; GO:0042393; F:histone binding; IEA:Ensembl.
GO; GO:0042826; F:histone deacetylase binding; IEA:Ensembl.
GO; GO:0000978; F:RNA polymerase II core promoter proximal region sequence-specific DNA binding; ISS:AgBase.
GO; GO:0043565; F:sequence-specific DNA binding; ISS:AgBase.
GO; GO:0003705; F:transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding; ISS:AgBase.
GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:AgBase.
GO; GO:0008134; F:transcription factor binding; ISS:AgBase.
GO; GO:0044212; F:transcription regulatory region DNA binding; ISS:AgBase.
GO; GO:0001077; F:transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding; ISS:AgBase.
GO; GO:0046632; P:alpha-beta T cell differentiation; ISS:AgBase.
GO; GO:0060033; P:anatomical structure regression; ISS:AgBase.
GO; GO:1902262; P:apoptotic process involved in blood vessel morphogenesis; ISS:AgBase.
GO; GO:0060561; P:apoptotic process involved in morphogenesis; ISS:AgBase.
GO; GO:0042100; P:B cell proliferation; ISS:AgBase.
GO; GO:0030509; P:BMP signaling pathway; ISS:AgBase.
GO; GO:0001569; P:branching involved in blood vessel morphogenesis; ISS:AgBase.
GO; GO:0060070; P:canonical Wnt signaling pathway; IDA:AgBase.
GO; GO:0060326; P:cell chemotaxis; IEA:Ensembl.
GO; GO:0048468; P:cell development; ISS:AgBase.
GO; GO:0008283; P:cell proliferation; IMP:AgBase.
GO; GO:0071353; P:cellular response to interleukin-4; IEA:Ensembl.
GO; GO:0061073; P:ciliary body morphogenesis; IMP:AgBase.
GO; GO:0021542; P:dentate gyrus development; ISS:AgBase.
GO; GO:0009953; P:dorsal/ventral pattern formation; IMP:AgBase.
GO; GO:0030326; P:embryonic limb morphogenesis; ISS:AgBase.
GO; GO:0001837; P:epithelial to mesenchymal transition; ISS:AgBase.
GO; GO:0048069; P:eye pigmentation; IMP:AgBase.
GO; GO:0060325; P:face morphogenesis; ISS:AgBase.
GO; GO:0021873; P:forebrain neuroblast division; ISS:AgBase.
GO; GO:0021879; P:forebrain neuron differentiation; IBA:GO_Central.
GO; GO:0021861; P:forebrain radial glial cell differentiation; ISS:AgBase.
GO; GO:0021943; P:formation of radial glial scaffolds; ISS:AgBase.
GO; GO:0021766; P:hippocampus development; ISS:AgBase.
GO; GO:0043966; P:histone H3 acetylation; IEA:Ensembl.
GO; GO:0043967; P:histone H4 acetylation; IEA:Ensembl.
GO; GO:0021854; P:hypothalamus development; IBA:GO_Central.
GO; GO:0061072; P:iris morphogenesis; IMP:AgBase.
GO; GO:0035108; P:limb morphogenesis; IMP:AgBase.
GO; GO:0048747; P:muscle fiber development; IBA:GO_Central.
GO; GO:0071866; P:negative regulation of apoptotic process in bone marrow; IBA:GO_Central.
GO; GO:0090090; P:negative regulation of canonical Wnt signaling pathway; IEA:Ensembl.
GO; GO:0043154; P:negative regulation of cysteine-type endopeptidase activity involved in apoptotic process; IBA:GO_Central.
GO; GO:0043392; P:negative regulation of DNA binding; IEA:Ensembl.
GO; GO:0071899; P:negative regulation of estrogen receptor binding; IEA:Ensembl.
GO; GO:0032696; P:negative regulation of interleukin-13 production; IBA:GO_Central.
GO; GO:0032713; P:negative regulation of interleukin-4 production; IBA:GO_Central.
GO; GO:0032714; P:negative regulation of interleukin-5 production; IBA:GO_Central.
GO; GO:0045665; P:negative regulation of neuron differentiation; IMP:AgBase.
GO; GO:0045843; P:negative regulation of striated muscle tissue development; ISS:AgBase.
GO; GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; ISS:AgBase.
GO; GO:0045892; P:negative regulation of transcription, DNA-templated; ISS:AgBase.
GO; GO:0001755; P:neural crest cell migration; IBA:GO_Central.
GO; GO:0030223; P:neutrophil differentiation; IBA:GO_Central.
GO; GO:0071895; P:odontoblast differentiation; IBA:GO_Central.
GO; GO:0001649; P:osteoblast differentiation; IBA:GO_Central.
GO; GO:0060021; P:palate development; ISS:AgBase.
GO; GO:0048341; P:paraxial mesoderm formation; ISS:AgBase.
GO; GO:0043923; P:positive regulation by host of viral transcription; IEA:Ensembl.
GO; GO:0030307; P:positive regulation of cell growth; IEA:Ensembl.
GO; GO:0030335; P:positive regulation of cell migration; IEA:Ensembl.
GO; GO:0071864; P:positive regulation of cell proliferation in bone marrow; IBA:GO_Central.
GO; GO:0010718; P:positive regulation of epithelial to mesenchymal transition; IEA:Ensembl.
GO; GO:0030854; P:positive regulation of granulocyte differentiation; IEA:Ensembl.
GO; GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; ISS:AgBase.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IMP:AgBase.
GO; GO:0022407; P:regulation of cell-cell adhesion; ISS:AgBase.
GO; GO:0016202; P:regulation of striated muscle tissue development; IBA:GO_Central.
GO; GO:0006357; P:regulation of transcription from RNA polymerase II promoter; ISS:AgBase.
GO; GO:0030111; P:regulation of Wnt signaling pathway; ISS:AgBase.
GO; GO:0050909; P:sensory perception of taste; ISS:AgBase.
GO; GO:0001756; P:somitogenesis; ISS:AgBase.
GO; GO:0002040; P:sprouting angiogenesis; ISS:AgBase.
GO; GO:0033153; P:T cell receptor V(D)J recombination; ISS:AgBase.
GO; GO:0045063; P:T-helper 1 cell differentiation; ISS:AgBase.
GO; GO:0043586; P:tongue development; ISS:AgBase.
GO; GO:0061153; P:trachea gland development; ISS:AgBase.
GO; GO:0001944; P:vasculature development; ISS:AgBase.
GO; GO:0016055; P:Wnt signaling pathway; ISS:AgBase.
Gene3D; 1.10.30.10; -; 1.
Gene3D; 4.10.900.10; -; 1.
InterPro; IPR027397; Catenin_binding_dom.
InterPro; IPR013558; CTNNB1-bd_N.
InterPro; IPR009071; HMG_box_dom.
InterPro; IPR036910; HMG_box_dom_sf.
InterPro; IPR028769; LEF1.
InterPro; IPR024940; TCF/LEF.
PANTHER; PTHR10373; PTHR10373; 1.
PANTHER; PTHR10373:SF11; PTHR10373:SF11; 1.
Pfam; PF08347; CTNNB1_binding; 1.
Pfam; PF00505; HMG_box; 1.
SMART; SM00398; HMG; 1.
SUPFAM; SSF47095; SSF47095; 1.
PROSITE; PS50118; HMG_BOX_2; 1.
2: Evidence at transcript level;
Complete proteome {ECO:0000313|Proteomes:UP000000539};
DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00267,
ECO:0000256|SAAS:SAAS00879239};
Nucleus {ECO:0000256|PROSITE-ProRule:PRU00267};
Reference proteome {ECO:0000313|Proteomes:UP000000539}.
DOMAIN 269 337 HMG box. {ECO:0000259|PROSITE:PS50118}.
DNA_BIND 269 337 HMG box. {ECO:0000256|PROSITE-
ProRule:PRU00267}.
SEQUENCE 369 AA; 40857 MW; BADF4B097103F864 CRC64;
MPQLPGAGGG GGDPELCATD EMIPFKDEGD PQKEKIFAEI SHPEEEGDLA DIKSSLVNES
EIAPGSGGHE VSRQTPAQDS YHDKGREHPE EGKHPDGGLY SKGPSYSGYS GYIMMPNMNN
DPYMPNGSLS PPIPRTSNKV PVVQPSHAVH PLTPLITYSD EHFSPGSHPS HIPSDVSSKQ
GMSRHPPAPD IPTFYPLSPG GVGQITPPLG WFSHHMIPGP PGPHTTGIPH PAIVTPQVKQ
EHPHNDSELM HVKPQHEQRK EQEPKRPHIK KPLNAFMLYM KEMRANVVAE CTLKESAAIN
QILGRRWHAL SREEQAKYYE LARKERQLHM QLYPGWSARD NYGKKKKRKR EKLQESASGT
GPRMTAAYI


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