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MADS-box transcription factor 1 (OsMADS1) (Protein LEAFY HULL STERILE 1) (Protein SEPALLATA-like)

 MADS1_ORYSJ             Reviewed;         257 AA.
Q10PZ9; B7EGS6; Q3ZES6; Q40700;
24-JUL-2007, integrated into UniProtKB/Swiss-Prot.
22-AUG-2006, sequence version 1.
25-OCT-2017, entry version 89.
RecName: Full=MADS-box transcription factor 1;
AltName: Full=OsMADS1;
AltName: Full=Protein LEAFY HULL STERILE 1;
AltName: Full=Protein SEPALLATA-like;
Name=MADS1; Synonyms=LHS1;
OrderedLocusNames=Os03g0215400, LOC_Os03g11614;
ORFNames=OsJ_09913 {ECO:0000312|EMBL:EEE58586.1};
Oryza sativa subsp. japonica (Rice).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade;
Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
NCBI_TaxID=39947;
[1]
NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, AND TISSUE SPECIFICITY.
TISSUE=Flower;
PubMed=7948920; DOI=10.1007/BF00013751;
Chung Y.-Y., Kim S.-R., Finkel D., Yanofsky M.F., An G.;
"Early flowering and reduced apical dominance result from ectopic
expression of a rice MADS box gene.";
Plant Mol. Biol. 26:657-665(1994).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], FUNCTION, DISRUPTION PHENOTYPE, AND
MUTAGENESIS OF ARG-24 AND GLY-27.
PubMed=10852934; DOI=10.1105/tpc.12.6.871;
Jeon J.-S., Jang S., Lee S., Nam J., Kim C., Lee S.-H., Chung Y.-Y.,
Kim S.-R., Lee Y.H., Cho Y.-G., An G.;
"Leafy hull sterile1 is a homeotic mutation in a rice MADS box gene
affecting rice flower development.";
Plant Cell 12:871-884(2000).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
PubMed=16109971; DOI=10.1101/gr.3869505;
The rice chromosome 3 sequencing consortium;
Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R.,
Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L.,
Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S., Johri S.,
Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S.,
Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J.,
de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H.,
Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F.,
Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A.,
Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J.,
Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L.,
Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A.,
Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W.,
Lee H.R., Jiang J., Jackson S.;
"Sequence, annotation, and analysis of synteny between rice chromosome
3 and diverged grass species.";
Genome Res. 15:1284-1291(2005).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
PubMed=16100779; DOI=10.1038/nature03895;
International rice genome sequencing project (IRGSP);
"The map-based sequence of the rice genome.";
Nature 436:793-800(2005).
[5]
GENOME REANNOTATION.
STRAIN=cv. Nipponbare;
PubMed=18089549; DOI=10.1093/nar/gkm978;
The rice annotation project (RAP);
"The rice annotation project database (RAP-DB): 2008 update.";
Nucleic Acids Res. 36:D1028-D1033(2008).
[6]
GENOME REANNOTATION.
STRAIN=cv. Nipponbare;
PubMed=24280374; DOI=10.1186/1939-8433-6-4;
Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H.,
McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S.,
Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L.,
Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T.,
Buell C.R., Matsumoto T.;
"Improvement of the Oryza sativa Nipponbare reference genome using
next generation sequence and optical map data.";
Rice 6:4-4(2013).
[7]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H.,
Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J.,
Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X.,
Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y.,
Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J.,
Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y.,
Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y.,
Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z.,
Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T.,
Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H.,
Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W.,
Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L.,
Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J.,
Samudrala R., Wang J., Wong G.K.-S., Yang H.;
"The genomes of Oryza sativa: a history of duplications.";
PLoS Biol. 3:266-281(2005).
[8]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Nipponbare;
PubMed=12869764; DOI=10.1126/science.1081288;
The rice full-length cDNA consortium;
"Collection, mapping, and annotation of over 28,000 cDNA clones from
japonica rice.";
Science 301:376-379(2003).
[9]
INTERACTION WITH MADS6.
PubMed=10444103; DOI=10.1104/pp.120.4.1193;
Moon Y.-H., Kang H.-G., Jung J.-Y., Jeon J.-S., Sung S.-K., An G.;
"Determination of the motif responsible for interaction between the
rice APETALA1/AGAMOUS-LIKE9 family proteins using a yeast two-hybrid
system.";
Plant Physiol. 120:1193-1204(1999).
[10]
TRANSCRIPTIONAL ACTIVATOR, AND INTERACTION WITH MADS14 AND MADS15.
PubMed=11197326; DOI=10.1023/A:1026517111843;
Lim J., Moon Y.-H., An G., Jang S.K.;
"Two rice MADS domain proteins interact with OsMADS1.";
Plant Mol. Biol. 44:513-527(2000).
[11]
FUNCTION.
AGRICOLA=IND22436162; DOI=10.1023/A:1011388620872;
Jeon J.-S., Lee S., Nam J., Jung K.-H., Yang W.-S., Yi G.-H.,
Oh B.-G., An G.;
"Production of transgenic rice plants showing reduced heading date and
plant height by ectopic expression of rice MADS-box genes.";
Mol. Breed. 6:581-592(2000).
[12]
FUNCTION, AND DEVELOPMENTAL STAGE.
PubMed=11466523; DOI=10.1007/s004270100153;
Prasad K., Sriram P., Kumar C.S., Kushalappa K., Vijayraghavan U.;
"Ectopic expression of rice OsMADS1 reveals a role in specifying the
lemma and palea, grass floral organs analogous to sepals.";
Dev. Genes Evol. 211:281-290(2001).
[13]
FUNCTION.
PubMed=16217607; DOI=10.1007/s11103-005-2161-y;
Agrawal G.K., Abe K., Yamazaki M., Miyao A., Hirochika H.;
"Conservation of the E-function for floral organ identity in rice
revealed by the analysis of tissue culture-induced loss-of-function
mutants of the OsMADS1 gene.";
Plant Mol. Biol. 59:125-135(2005).
-!- FUNCTION: Probable transcription factor involved in the
development of floral organs. Required for the formation of inner
floral organs (lodicules, stamens and carpels, or whorls 2, 3 and
4) and the lemma and palea (whorl 1), which are grass floral
organs analogous to sepals. May be involved in the control of
flowering time. Seems to act as transcriptional activator. May act
upstream of the auxin-responsive protein GH3.8.
{ECO:0000269|PubMed:10852934, ECO:0000269|PubMed:11466523,
ECO:0000269|PubMed:16217607, ECO:0000269|PubMed:7948920,
ECO:0000269|Ref.11}.
-!- SUBUNIT: May interact with the K-box of MADS6, MADS14 and MADS15.
-!- INTERACTION:
Q10CQ1:MADS14; NbExp=4; IntAct=EBI-627957, EBI-627890;
Q6Q9I2:MADS15; NbExp=4; IntAct=EBI-627957, EBI-627918;
Q6EU39:MADS6; NbExp=4; IntAct=EBI-627957, EBI-627980;
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
-!- TISSUE SPECIFICITY: Expressed in lemmas, paleas and pistils.
Weakly expressed in carpels. {ECO:0000269|PubMed:7948920}.
-!- DEVELOPMENTAL STAGE: Expressed at early stage of flower
development in floral meristem, and at later stage in lemma, palea
and carpel primordia. {ECO:0000269|PubMed:11466523}.
-!- DISRUPTION PHENOTYPE: Homeotic transformation of lodicules,
stamens and carpels into lemma- and palea-like structures.
{ECO:0000269|PubMed:10852934}.
-----------------------------------------------------------------------
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EMBL; L34271; AAA66187.1; -; mRNA.
EMBL; AF204063; AAG35652.1; -; Genomic_DNA.
EMBL; AC105732; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AC135158; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; DP000009; ABF94637.1; -; Genomic_DNA.
EMBL; AP008209; BAF11290.1; -; Genomic_DNA.
EMBL; AP014959; BAS82963.1; -; Genomic_DNA.
EMBL; CM000140; EEE58586.1; -; Genomic_DNA.
EMBL; AK069728; BAG91573.1; -; mRNA.
PIR; S53306; S53306.
RefSeq; XP_015628585.1; XM_015773099.1.
UniGene; Os.10941; -.
ProteinModelPortal; Q10PZ9; -.
SMR; Q10PZ9; -.
BioGrid; 801096; 1.
IntAct; Q10PZ9; 4.
STRING; 39947.LOC_Os03g11614.1; -.
PaxDb; Q10PZ9; -.
EnsemblPlants; OS03T0215400-01; OS03T0215400-01; OS03G0215400.
GeneID; 4332059; -.
Gramene; OS03T0215400-01; OS03T0215400-01; OS03G0215400.
KEGG; osa:4332059; -.
eggNOG; KOG0014; Eukaryota.
eggNOG; COG5068; LUCA.
InParanoid; Q10PZ9; -.
OMA; NNEDMAG; -.
OrthoDB; EOG09360KNV; -.
Proteomes; UP000059680; Chromosome 3.
Genevisible; Q10PZ9; OS.
GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO; GO:0003677; F:DNA binding; TAS:AgBase.
GO; GO:0046983; F:protein dimerization activity; TAS:AgBase.
GO; GO:0000977; F:RNA polymerase II regulatory region sequence-specific DNA binding; IEA:InterPro.
GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro.
GO; GO:0008134; F:transcription factor binding; TAS:AgBase.
GO; GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.
GO; GO:0010582; P:floral meristem determinacy; TAS:AgBase.
GO; GO:0010022; P:meristem determinacy; IGI:AgBase.
GO; GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IEA:InterPro.
GO; GO:0048509; P:regulation of meristem development; IGI:AgBase.
GO; GO:0010093; P:specification of floral organ identity; IMP:AgBase.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
CDD; cd00265; MADS_MEF2_like; 1.
Gene3D; 3.40.1810.10; -; 1.
InterPro; IPR033896; MADS_MEF2-like.
InterPro; IPR002487; TF_Kbox.
InterPro; IPR002100; TF_MADSbox.
InterPro; IPR036879; TF_MADSbox_sf.
Pfam; PF01486; K-box; 1.
Pfam; PF00319; SRF-TF; 1.
PRINTS; PR00404; MADSDOMAIN.
SMART; SM00432; MADS; 1.
SUPFAM; SSF55455; SSF55455; 1.
PROSITE; PS51297; K_BOX; 1.
PROSITE; PS00350; MADS_BOX_1; 1.
PROSITE; PS50066; MADS_BOX_2; 1.
1: Evidence at protein level;
Activator; Complete proteome; Developmental protein; Differentiation;
DNA-binding; Flowering; Nucleus; Reference proteome; Transcription;
Transcription regulation.
CHAIN 1 257 MADS-box transcription factor 1.
/FTId=PRO_0000229892.
DOMAIN 1 61 MADS-box. {ECO:0000255|PROSITE-
ProRule:PRU00251}.
DOMAIN 85 175 K-box. {ECO:0000255|PROSITE-
ProRule:PRU00629}.
COMPBIAS 200 251 His-rich.
MUTAGEN 24 24 R->C: In lhs1; abnormal growth of
spikelets and sterile flowers; when
associated with D-27.
{ECO:0000269|PubMed:10852934}.
MUTAGEN 27 27 G->D: In lhs1; abnormal growth of
spikelets and sterile flowers; when
associated with C-24.
{ECO:0000269|PubMed:10852934}.
SEQUENCE 257 AA; 29528 MW; 70A3DAEED355A37C CRC64;
MGRGKVELKR IENKISRQVT FAKRRNGLLK KAYELSLLCD AEVALIIFSG RGRLFEFSSS
SCMYKTLERY RSCNYNSQDA AAPENEINYQ EYLKLKTRVE FLQTTQRNIL GEDLGPLSMK
ELEQLENQIE VSLKQIRSRK NQALLDQLFD LKSKEQQLQD LNKDLRKKLQ ETSAENVLHM
SWQDGGGHSG SSTVLADQPH HHQGLLHPHP DQGDHSLQIG YHHPHAHHHQ AYMDHLSNEA
ADMVAHHPNE HIPSGWI


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