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MADS-box transcription factor 6 (OsMADS6) (Protein MOSAIC FLORAL ORGANS 1)

 MADS6_ORYSJ             Reviewed;         250 AA.
Q6EU39; A0A0P0VN09; O24228; Q0DYM5;
04-APR-2006, integrated into UniProtKB/Swiss-Prot.
16-AUG-2004, sequence version 1.
20-DEC-2017, entry version 92.
RecName: Full=MADS-box transcription factor 6;
AltName: Full=OsMADS6;
AltName: Full=Protein MOSAIC FLORAL ORGANS 1;
Name=MADS6; Synonyms=MFO1;
OrderedLocusNames=Os02g0682200, LOC_Os02g45770;
ORFNames=OJ1123_G04.6, OsJ_07942;
Oryza sativa subsp. japonica (Rice).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade;
Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
NCBI_TaxID=39947;
[1]
NUCLEOTIDE SEQUENCE [MRNA], INTERACTION WITH MADS1; MADS5; MADS7;
MADS8; MADS14; MADS15; MADS17 AND MADS18, AND TISSUE SPECIFICITY.
PubMed=10444103; DOI=10.1104/pp.120.4.1193;
Moon Y.-H., Kang H.-G., Jung J.-Y., Jeon J.-S., Sung S.-K., An G.;
"Determination of the motif responsible for interaction between the
rice APETALA1/AGAMOUS-LIKE9 family proteins using a yeast two-hybrid
system.";
Plant Physiol. 120:1193-1204(1999).
[2]
NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, MUTAGENESIS OF ARG-24, TISSUE
SPECIFICITY, DEVELOPMENTAL STAGE, AND DISRUPTION PHENOTYPE.
PubMed=19820190; DOI=10.1105/tpc.109.068742;
Ohmori S., Kimizu M., Sugita M., Miyao A., Hirochika H., Uchida E.,
Nagato Y., Yoshida H.;
"MOSAIC FLORAL ORGANS1, an AGL6-like MADS box gene, regulates floral
organ identity and meristem fate in rice.";
Plant Cell 21:3008-3025(2009).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
PubMed=16100779; DOI=10.1038/nature03895;
International rice genome sequencing project (IRGSP);
"The map-based sequence of the rice genome.";
Nature 436:793-800(2005).
[4]
GENOME REANNOTATION.
STRAIN=cv. Nipponbare;
PubMed=18089549; DOI=10.1093/nar/gkm978;
The rice annotation project (RAP);
"The rice annotation project database (RAP-DB): 2008 update.";
Nucleic Acids Res. 36:D1028-D1033(2008).
[5]
GENOME REANNOTATION.
STRAIN=cv. Nipponbare;
PubMed=24280374; DOI=10.1186/1939-8433-6-4;
Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H.,
McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S.,
Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L.,
Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T.,
Buell C.R., Matsumoto T.;
"Improvement of the Oryza sativa Nipponbare reference genome using
next generation sequence and optical map data.";
Rice 6:4-4(2013).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H.,
Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J.,
Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X.,
Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y.,
Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J.,
Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y.,
Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y.,
Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z.,
Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T.,
Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H.,
Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W.,
Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L.,
Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J.,
Samudrala R., Wang J., Wong G.K.-S., Yang H.;
"The genomes of Oryza sativa: a history of duplications.";
PLoS Biol. 3:266-281(2005).
[7]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Nipponbare;
PubMed=12869764; DOI=10.1126/science.1081288;
The rice full-length cDNA consortium;
"Collection, mapping, and annotation of over 28,000 cDNA clones from
japonica rice.";
Science 301:376-379(2003).
[8]
FUNCTION.
AGRICOLA=IND22436162; DOI=10.1023/A:1011388620872;
Jeon J.-S., Lee S., Nam J., Jung K.-H., Yang W.-S., Yi G.-H.,
Oh B.-G., An G.;
"Production of transgenic rice plants showing reduced heading date and
plant height by ectopic expression of rice MADS-box genes.";
Mol. Breed. 6:581-592(2000).
[9]
INTERACTION WITH MADS18 AND NF-YB1.
PubMed=11971906; DOI=10.1074/jbc.M202546200;
Masiero S., Imbriano C., Ravasio F., Favaro R., Pelucchi N.,
Gorla M.S., Mantovani R., Colombo L., Kater M.M.;
"Ternary complex formation between MADS-box transcription factors and
the histone fold protein NF-YB.";
J. Biol. Chem. 277:26429-26435(2002).
[10]
INTERACTION WITH MADS13, AND DEVELOPMENTAL STAGE.
PubMed=12395189; DOI=10.1007/s00438-002-0746-6;
Favaro R., Immink R.G., Ferioli V., Bernasconi B., Byzova M.,
Angenent G.C., Kater M.M., Colombo L.;
"Ovule-specific MADS-box proteins have conserved protein-protein
interactions in monocot and dicot plants.";
Mol. Genet. Genomics 268:152-159(2002).
[11]
INTERACTION WITH MADS16.
PubMed=12905025; DOI=10.1007/s00425-003-1066-8;
Lee S., Jeon J.-S., An K., Moon Y.-H., Lee S.-H., Chung Y.-Y., An G.;
"Alteration of floral organ identity in rice through ectopic
expression of OsMADS16.";
Planta 217:904-911(2003).
[12]
INTERACTION WITH MADS18.
PubMed=15299121; DOI=10.1104/pp.104.045039;
Fornara F., Parenicova L., Falasca G., Pelucchi N., Masiero S.,
Ciannamea S., Lopez-Dee Z.P., Altamura M.M., Colombo L., Kater M.M.;
"Functional characterization of OsMADS18, a member of the AP1/SQUA
subfamily of MADS box genes.";
Plant Physiol. 135:2207-2219(2004).
-!- FUNCTION: Probable transcription factor. Regulates floral organ
identity and floral meristem determinacy. May be involved in the
control of flowering time. {ECO:0000269|PubMed:19820190,
ECO:0000269|Ref.8}.
-!- SUBUNIT: May interact with the K-box of MADS1, MADS5, MADS7,
MADS8, MADS14, MADS15, MADS16, MADS17 and MADS18. May interact
with MADS13. The dimer composed of MADS6 and MADS18 forms a
ternary complex with histone fold protein NF-YB1.
-!- INTERACTION:
Q10PZ9:MADS1; NbExp=4; IntAct=EBI-627980, EBI-627957;
Q10CQ1:MADS14; NbExp=5; IntAct=EBI-627980, EBI-627890;
Q6Q9I2:MADS15; NbExp=3; IntAct=EBI-627980, EBI-627918;
Q0D4T4:MADS18; NbExp=3; IntAct=EBI-627980, EBI-627967;
Q0DEB8:MADS5; NbExp=3; IntAct=EBI-627980, EBI-627927;
Q0J466:MADS7; NbExp=5; IntAct=EBI-627980, EBI-627872;
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
-!- TISSUE SPECIFICITY: Expressed in the floral meristem. Highly
expressed in lodicules. Expressed in palea and pistil. Weakly
expressed in carpels, empty glumes and stamens. Not detected in
lemmas. {ECO:0000269|PubMed:10444103,
ECO:0000269|PubMed:19820190}.
-!- DEVELOPMENTAL STAGE: Expressed during ovule development in the
inner and outer integuments. Not detected in young panicles.
{ECO:0000269|PubMed:12395189, ECO:0000269|PubMed:19820190}.
-!- DISRUPTION PHENOTYPE: Abnormal and almost sterile florets. Mosaic
organs and disturbed identities of palea and lodicule. Extra
carpels or spikelets. {ECO:0000269|PubMed:19820190}.
-----------------------------------------------------------------------
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-----------------------------------------------------------------------
EMBL; U78782; AAB64250.1; -; mRNA.
EMBL; FJ666318; ACV89861.1; -; mRNA.
EMBL; AP004178; BAD27830.1; -; Genomic_DNA.
EMBL; AP008208; BAF09663.1; -; Genomic_DNA.
EMBL; AP014958; BAS80308.1; -; Genomic_DNA.
EMBL; CM000139; EEE57586.1; -; Genomic_DNA.
EMBL; AK069103; BAG91254.1; -; mRNA.
PIR; T04167; T04167.
RefSeq; XP_015623947.1; XM_015768461.1.
UniGene; Os.7271; -.
ProteinModelPortal; Q6EU39; -.
SMR; Q6EU39; -.
IntAct; Q6EU39; 15.
STRING; 39947.LOC_Os02g45770.1; -.
PaxDb; Q6EU39; -.
PRIDE; Q6EU39; -.
EnsemblPlants; OS02T0682200-01; OS02T0682200-01; OS02G0682200.
GeneID; 4330328; -.
Gramene; OS02T0682200-01; OS02T0682200-01; OS02G0682200.
KEGG; osa:4330328; -.
eggNOG; KOG0014; Eukaryota.
eggNOG; COG5068; LUCA.
HOGENOM; HOG000155301; -.
InParanoid; Q6EU39; -.
KO; K09264; -.
OMA; RKERHLG; -.
OrthoDB; EOG09360JNU; -.
Proteomes; UP000059680; Chromosome 2.
ExpressionAtlas; Q6EU39; baseline and differential.
Genevisible; Q6EU39; OS.
GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO; GO:0003677; F:DNA binding; TAS:AgBase.
GO; GO:0046983; F:protein dimerization activity; TAS:AgBase.
GO; GO:0000977; F:RNA polymerase II regulatory region sequence-specific DNA binding; IEA:InterPro.
GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro.
GO; GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.
GO; GO:0009553; P:embryo sac development; IMP:AgBase.
GO; GO:0010582; P:floral meristem determinacy; IMP:AgBase.
GO; GO:0048437; P:floral organ development; IDA:AgBase.
GO; GO:0048449; P:floral organ formation; IGI:AgBase.
GO; GO:0048457; P:floral whorl morphogenesis; IMP:AgBase.
GO; GO:0048459; P:floral whorl structural organization; IMP:AgBase.
GO; GO:0080060; P:integument development; IMP:AgBase.
GO; GO:0010022; P:meristem determinacy; IMP:UniProtKB.
GO; GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IEA:InterPro.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IDA:UniProtKB.
GO; GO:0048509; P:regulation of meristem development; IGI:AgBase.
GO; GO:0048316; P:seed development; IMP:AgBase.
GO; GO:0080112; P:seed growth; IMP:AgBase.
GO; GO:0010094; P:specification of carpel identity; IMP:AgBase.
GO; GO:0010093; P:specification of floral organ identity; IMP:UniProtKB.
GO; GO:0048833; P:specification of floral organ number; IMP:AgBase.
GO; GO:0048455; P:stamen formation; IMP:AgBase.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
CDD; cd00265; MADS_MEF2_like; 1.
Gene3D; 3.40.1810.10; -; 1.
InterPro; IPR033896; MADS_MEF2-like.
InterPro; IPR002487; TF_Kbox.
InterPro; IPR002100; TF_MADSbox.
InterPro; IPR036879; TF_MADSbox_sf.
Pfam; PF01486; K-box; 1.
Pfam; PF00319; SRF-TF; 1.
PRINTS; PR00404; MADSDOMAIN.
SMART; SM00432; MADS; 1.
SUPFAM; SSF55455; SSF55455; 1.
PROSITE; PS51297; K_BOX; 1.
PROSITE; PS00350; MADS_BOX_1; 1.
PROSITE; PS50066; MADS_BOX_2; 1.
1: Evidence at protein level;
Activator; Complete proteome; Developmental protein; Differentiation;
DNA-binding; Flowering; Nucleus; Reference proteome; Transcription;
Transcription regulation.
CHAIN 1 250 MADS-box transcription factor 6.
/FTId=PRO_0000229895.
DOMAIN 1 61 MADS-box. {ECO:0000255|PROSITE-
ProRule:PRU00251}.
DOMAIN 86 176 K-box. {ECO:0000255|PROSITE-
ProRule:PRU00629}.
MUTAGEN 24 24 R->H: In mfo1-1; loss of function.
{ECO:0000269|PubMed:19820190}.
SEQUENCE 250 AA; 28437 MW; 7E574BD86A48220C CRC64;
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSA
GITKTLERYQ HCCYNAQDSN NALSETQSWY HEMSKLKAKF EALQRTQRHL LGEDLGPLSV
KELQQLEKQL ECALSQARQR KTQLMMEQVE ELRRKERQLG EINRQLKHKL EVEGSTSNYR
AMQQASWAQG AVVENGAAYV QPPPHSAAMD SEPTLQIGYP HQFVPAEANT IQRSTAPAGA
ENNFMLGWVL


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