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MYB transcription factor (Myb domain protein 94) (Putative transcription factor MYB94)

 MYB94_ARATH             Reviewed;         333 AA.
Q9SN78; Q9ZTC1;
31-JAN-2018, integrated into UniProtKB/Swiss-Prot.
01-MAY-2000, sequence version 1.
07-NOV-2018, entry version 155.
RecName: Full=Transcription factor MYB94 {ECO:0000303|PubMed:9839469};
AltName: Full=Myb-related protein 94 {ECO:0000303|PubMed:9839469};
Short=AtMYB94 {ECO:0000303|PubMed:9839469};
Name=MYB94 {ECO:0000303|PubMed:9839469}; Synonyms=ATMYBCP70;
OrderedLocusNames=At3g47600 {ECO:0000312|Araport:AT3G47600};
ORFNames=F1P2.150 {ECO:0000312|EMBL:CAB61986.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA], AND NOMENCLATURE.
STRAIN=cv. Columbia;
PubMed=9839469; DOI=10.1046/j.1365-313x.1998.00278.x;
Kranz H.D., Denekamp M., Greco R., Jin H.-L., Leyva A., Meissner R.C.,
Petroni K., Urzainqui A., Bevan M., Martin C., Smeekens S.,
Tonelli C., Paz-Ares J., Weisshaar B.;
"Towards functional characterisation of the members of the R2R3-MYB
gene family from Arabidopsis thaliana.";
Plant J. 16:263-276(1998).
[2]
NUCLEOTIDE SEQUENCE [MRNA].
Qu L., Gu H.;
"The MYB transcription factor family in Arabidopsis: A genome-wide
cloning and expression pattern analysis.";
Submitted (JAN-2004) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=11130713; DOI=10.1038/35048706;
Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M.,
Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B.,
Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P.,
De Simone V., Choisne N., Artiguenave F., Robert C., Brottier P.,
Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F.,
Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V.,
Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S.,
Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G.,
Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B.,
Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G.,
Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J.,
Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D.,
Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
Monfort A., Argiriou A., Flores M., Liguori R., Vitale D.,
Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W.,
Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J.,
Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P.,
Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S.,
Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V.,
Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C.,
Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E.,
Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y.,
Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A.,
Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
Watanabe A., Yamada M., Yasuda M., Tabata S.;
"Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana.";
Nature 408:820-822(2000).
[4]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[6]
FUNCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY, AND INDUCTION.
PubMed=25305760; DOI=10.1093/pcp/pcu142;
Lee S.B., Suh M.C.;
"Cuticular wax biosynthesis is up-regulated by the MYB94 transcription
factor in Arabidopsis.";
Plant Cell Physiol. 56:48-60(2015).
[7]
FUNCTION.
PubMed=27577115; DOI=10.1093/pcp/pcw147;
Lee S.B., Kim H.U., Suh M.C.;
"MYB94 and MYB96 additively activate cuticular wax biosynthesis in
Arabidopsis.";
Plant Cell Physiol. 57:2300-2311(2016).
-!- FUNCTION: Transcription activator involved in the activation of
cuticular wax biosynthesis under drought stress. Binds directly to
the promoters of genes involved in cuticular wax biosynthesis.
Transactivates WSD1, KCS2/DAISY, CER1, CER2, FAR3 and ECR genes
(PubMed:25305760, PubMed:27577115). Functions together with MYB96
in the activation of cuticular wax biosynthesis (PubMed:27577115).
{ECO:0000269|PubMed:25305760, ECO:0000269|PubMed:27577115}.
-!- INTERACTION:
Q9LXY8:T5P19_170; NbExp=3; IntAct=EBI-4429731, EBI-15200578;
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-
ProRule:PRU00625, ECO:0000269|PubMed:25305760}.
-!- TISSUE SPECIFICITY: Expressed in germinating seeds, rosette and
cauline leaves, flower buds, open flowers, stems and developing
siliques. {ECO:0000269|PubMed:25305760}.
-!- INDUCTION: Induced by salt stress, osmotic shock and abscisic acid
(ABA). {ECO:0000269|PubMed:25305760}.
-!- MISCELLANEOUS: Plants overexpressing MYB94 exhibit deposition of
epicuticuar wax crystals on leaf surface.
{ECO:0000269|PubMed:25305760}.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution (CC BY 4.0) License
-----------------------------------------------------------------------
EMBL; AF062918; AAC83640.1; -; mRNA.
EMBL; AY519595; AAS10065.1; -; mRNA.
EMBL; AL132955; CAB61986.1; -; Genomic_DNA.
EMBL; CP002686; AEE78306.1; -; Genomic_DNA.
EMBL; BT002802; AAO22626.1; -; mRNA.
EMBL; BT004361; AAO42355.1; -; mRNA.
PIR; T45720; T45720.
RefSeq; NP_190344.1; NM_114628.4.
UniGene; At.21591; -.
ProteinModelPortal; Q9SN78; -.
SMR; Q9SN78; -.
IntAct; Q9SN78; 4.
STRING; 3702.AT3G47600.1; -.
PaxDb; Q9SN78; -.
EnsemblPlants; AT3G47600.1; AT3G47600.1; AT3G47600.
GeneID; 823914; -.
Gramene; AT3G47600.1; AT3G47600.1; AT3G47600.
KEGG; ath:AT3G47600; -.
Araport; AT3G47600; -.
TAIR; locus:2079182; AT3G47600.
eggNOG; KOG0048; Eukaryota.
eggNOG; COG5147; LUCA.
HOGENOM; HOG000237600; -.
InParanoid; Q9SN78; -.
KO; K09422; -.
OMA; WLFDDAI; -.
OrthoDB; EOG09360KVW; -.
PhylomeDB; Q9SN78; -.
PRO; PR:Q9SN78; -.
Proteomes; UP000006548; Chromosome 3.
ExpressionAtlas; Q9SN78; baseline and differential.
GO; GO:0005634; C:nucleus; IDA:UniProtKB.
GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
GO; GO:0043565; F:sequence-specific DNA binding; IDA:UniProtKB.
GO; GO:0044212; F:transcription regulatory region DNA binding; IBA:GO_Central.
GO; GO:0030154; P:cell differentiation; IBA:GO_Central.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IMP:UniProtKB.
GO; GO:1904278; P:positive regulation of wax biosynthetic process; IMP:UniProtKB.
GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
GO; GO:0009737; P:response to abscisic acid; IEP:TAIR.
GO; GO:0009733; P:response to auxin; IEP:TAIR.
GO; GO:0046686; P:response to cadmium ion; IEP:TAIR.
GO; GO:0009723; P:response to ethylene; IEP:TAIR.
GO; GO:0009753; P:response to jasmonic acid; IEP:TAIR.
GO; GO:0080167; P:response to karrikin; IEP:TAIR.
GO; GO:0009751; P:response to salicylic acid; IEP:TAIR.
GO; GO:0009651; P:response to salt stress; IEP:TAIR.
GO; GO:0009414; P:response to water deprivation; IMP:UniProtKB.
CDD; cd00167; SANT; 2.
InterPro; IPR009057; Homeobox-like_sf.
InterPro; IPR015495; Myb-like_TF.
InterPro; IPR017930; Myb_dom.
InterPro; IPR001005; SANT/Myb.
PANTHER; PTHR10641; PTHR10641; 1.
Pfam; PF00249; Myb_DNA-binding; 2.
SMART; SM00717; SANT; 2.
SUPFAM; SSF46689; SSF46689; 1.
PROSITE; PS51294; HTH_MYB; 2.
1: Evidence at protein level;
Activator; Complete proteome; DNA-binding; Nucleus;
Reference proteome; Repeat; Stress response; Transcription;
Transcription regulation.
CHAIN 1 333 Transcription factor MYB94.
/FTId=PRO_0000442918.
DOMAIN 9 65 HTH myb-type 1. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DOMAIN 66 116 HTH myb-type 2. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DNA_BIND 37 61 H-T-H motif. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DNA_BIND 89 112 H-T-H motif. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
COMPBIAS 202 212 Thr-rich. {ECO:0000255|PROSITE-
ProRule:PRU00017}.
CONFLICT 201 201 S -> STT (in Ref. 1; AAC83640).
{ECO:0000305}.
SEQUENCE 333 AA; 37144 MW; FD31160F0F0D3B92 CRC64;
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTHTGLRRCS KSCRLRWTNY
LRPGIKRGNF TEHEEKMILH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLKKMN
DSCDSTINNG LDNKDFSISN KNTTSHQSSN SSKGQWERRL QTDINMAKQA LCDALSIDKP
QNPTNFSIPD LGYGPSSSSS STTTTTTTTR NTNPYPSGVY ASSAENIARL LQNFMKDTPK
TSVPLPVAAT EMAITTAASS PSTTEGDGEG IDHSLFSFNS IDEAEEKPKL IDHDINGLIT
QGSLSLFEKW LFDEQSHDMI INNMSLEGQE VLF


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