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Malate synthase 1, glyoxysomal (EC 2.3.3.9)

 MASY_YEAST              Reviewed;         554 AA.
P30952; B0KZR8; B0KZS7; B0KZU5; B0KZY1; B0L026; D6W165; Q4KQ64;
Q4KQ91; Q4KQC3; Q4KQC4; Q4KQC8;
01-JUL-1993, integrated into UniProtKB/Swiss-Prot.
01-JUL-1993, sequence version 1.
05-JUL-2017, entry version 148.
RecName: Full=Malate synthase 1, glyoxysomal;
EC=2.3.3.9;
Name=MLS1; OrderedLocusNames=YNL117W; ORFNames=N1921;
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast).
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces.
NCBI_TaxID=559292;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
PubMed=1454530; DOI=10.1093/nar/20.21.5677;
Hartig A., Simon M.M., Schuster T., Daugherty J.R., Yoo H.S.,
Cooper T.G.;
"Differentially regulated malate synthase genes participate in carbon
and nitrogen metabolism of S. cerevisiae.";
Nucleic Acids Res. 20:5677-5686(1992).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND VARIANTS CYS-217; SER-253;
ASP-310 AND VAL-541.
STRAIN=ATCC 200060 / W303, S103, SK1, V1-09, YJM 1129, YJM 269,
YJM 270, YJM 320, YJM 326, YJM 339, YJM 627, and YJM230;
PubMed=18780730; DOI=10.1534/genetics.108.092932;
Sinha H., David L., Pascon R.C., Clauder-Muenster S., Krishnakumar S.,
Nguyen M., Shi G., Dean J., Davis R.W., Oefner P.J., McCusker J.H.,
Steinmetz L.M.;
"Sequential elimination of major-effect contributors identifies
additional quantitative trait loci conditioning high-temperature
growth in yeast.";
Genetics 180:1661-1670(2008).
[3]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
PubMed=9090055;
DOI=10.1002/(SICI)1097-0061(19970315)13:3<261::AID-YEA64>3.0.CO;2-L;
de Antoni A., D'Angelo M., Dal Pero F., Sartorello F., Pandolfo D.,
Pallavicini A., Lanfranchi G., Valle G.;
"The DNA sequence of cosmid 14-13b from chromosome XIV of
Saccharomyces cerevisiae reveals an unusually high number of
overlapping open reading frames.";
Yeast 13:261-266(1997).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ATCC 204508 / S288c;
PubMed=9169873;
Philippsen P., Kleine K., Poehlmann R., Duesterhoeft A., Hamberg K.,
Hegemann J.H., Obermaier B., Urrestarazu L.A., Aert R., Albermann K.,
Altmann R., Andre B., Baladron V., Ballesta J.P.G., Becam A.-M.,
Beinhauer J.D., Boskovic J., Buitrago M.J., Bussereau F., Coster F.,
Crouzet M., D'Angelo M., Dal Pero F., De Antoni A., del Rey F.,
Doignon F., Domdey H., Dubois E., Fiedler T.A., Fleig U., Floeth M.,
Fritz C., Gaillardin C., Garcia-Cantalejo J.M., Glansdorff N.,
Goffeau A., Gueldener U., Herbert C.J., Heumann K., Heuss-Neitzel D.,
Hilbert H., Hinni K., Iraqui Houssaini I., Jacquet M., Jimenez A.,
Jonniaux J.-L., Karpfinger-Hartl L., Lanfranchi G., Lepingle A.,
Levesque H., Lyck R., Maftahi M., Mallet L., Maurer C.T.C.,
Messenguy F., Mewes H.-W., Moestl D., Nasr F., Nicaud J.-M.,
Niedenthal R.K., Pandolfo D., Pierard A., Piravandi E., Planta R.J.,
Pohl T.M., Purnelle B., Rebischung C., Remacha M.A., Revuelta J.L.,
Rinke M., Saiz J.E., Sartorello F., Scherens B., Sen-Gupta M.,
Soler-Mira A., Urbanus J.H.M., Valle G., Van Dyck L., Verhasselt P.,
Vierendeels F., Vissers S., Voet M., Volckaert G., Wach A.,
Wambutt R., Wedler H., Zollner A., Hani J.;
"The nucleotide sequence of Saccharomyces cerevisiae chromosome XIV
and its evolutionary implications.";
Nature 387:93-98(1997).
[5]
GENOME REANNOTATION.
STRAIN=ATCC 204508 / S288c;
PubMed=24374639; DOI=10.1534/g3.113.008995;
Engel S.R., Dietrich F.S., Fisk D.G., Binkley G., Balakrishnan R.,
Costanzo M.C., Dwight S.S., Hitz B.C., Karra K., Nash R.S., Weng S.,
Wong E.D., Lloyd P., Skrzypek M.S., Miyasato S.R., Simison M.,
Cherry J.M.;
"The reference genome sequence of Saccharomyces cerevisiae: Then and
now.";
G3 (Bethesda) 4:389-398(2014).
[6]
NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-282, AND VARIANTS THR-118;
VAL-199 AND SER-253.
STRAIN=AKU-4011, ATCC 204508 / S288c,
ATCC 9804 / CBS 400 / DSM 70478 / IFO 0210 / JCM 2220, Awamori-1,
Cote des blancs, I14, K1, K10, K5, K9, Lalvin 71B, Lalvin BM45,
Lalvin CY-3079, Levuline ALS, M1, M11, M12, M13, M15, M17, M19, M2,
M20, M21, M24, M29, M3, M30, M31, M32, M33, M34, M4, M5, M6, M7, M8,
M9, NRIC 1413, NRIC 1685, NRIC 23, NRRL Y-1438, NRRL Y-1532,
NRRL Y-1546, NRRL Y-2411, NRRL Y-390, NRRL Y-5997, NRRL Y-7567,
NRRL YB-1952, Pasteur Red, UCD 175, UCD 2120, UCD 529, UCD 612,
UCD 762, UCD 765, UCD 781, UCD 820, UCD51, YJM 145, YJM 269, YJM 270,
YJM 280, YJM 320, YJM 326, YJM 339, YJM 421, YJM 627, YJM1129 YPS163,
YJM308, YJM434, YJM436, YJM440, YJM454, YPS1000, YPS1009,
Zymaflore F15, and Zymaflore VL3;
PubMed=16103919; DOI=10.1371/journal.pgen.0010005;
Fay J.C., Benavides J.A.;
"Evidence for domesticated and wild populations of Saccharomyces
cerevisiae.";
PLoS Genet. 1:66-71(2005).
-!- FUNCTION: This isozyme is necessary for growth on acetate as sole
C-source.
-!- CATALYTIC ACTIVITY: Acetyl-CoA + H(2)O + glyoxylate = (S)-malate +
CoA.
-!- PATHWAY: Carbohydrate metabolism; glyoxylate cycle; (S)-malate
from isocitrate: step 2/2.
-!- SUBUNIT: Homotrimer.
-!- INTERACTION:
P33203:PRP40; NbExp=2; IntAct=EBI-10428, EBI-701;
P39940:RSP5; NbExp=3; IntAct=EBI-10428, EBI-16219;
-!- SUBCELLULAR LOCATION: Glyoxysome.
-!- SIMILARITY: Belongs to the malate synthase family. {ECO:0000305}.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution-NoDerivs License
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EMBL; X64407; CAA45750.1; -; Genomic_DNA.
EMBL; EF125216; ABN58540.1; -; Genomic_DNA.
EMBL; EF125217; ABN58549.1; -; Genomic_DNA.
EMBL; EF125218; ABN58558.1; -; Genomic_DNA.
EMBL; EF125219; ABN58567.1; -; Genomic_DNA.
EMBL; EF125220; ABN58575.1; -; Genomic_DNA.
EMBL; EF125221; ABN58585.1; -; Genomic_DNA.
EMBL; EF125222; ABN58594.1; -; Genomic_DNA.
EMBL; EF125223; ABN58603.1; -; Genomic_DNA.
EMBL; EF125224; ABN58612.1; -; Genomic_DNA.
EMBL; EF125225; ABN58621.1; -; Genomic_DNA.
EMBL; EF125226; ABN58630.1; -; Genomic_DNA.
EMBL; EF125228; ABN58648.1; -; Genomic_DNA.
EMBL; Z69382; CAA93390.1; -; Genomic_DNA.
EMBL; Z71393; CAA95997.1; -; Genomic_DNA.
EMBL; AY942279; AAY22671.1; -; Genomic_DNA.
EMBL; AY942280; AAY22672.1; -; Genomic_DNA.
EMBL; AY942281; AAY22673.1; -; Genomic_DNA.
EMBL; AY942282; AAY22674.1; -; Genomic_DNA.
EMBL; AY942283; AAY22675.1; -; Genomic_DNA.
EMBL; AY942284; AAY22676.1; -; Genomic_DNA.
EMBL; AY942285; AAY22677.1; -; Genomic_DNA.
EMBL; AY942286; AAY22678.1; -; Genomic_DNA.
EMBL; AY942287; AAY22679.1; -; Genomic_DNA.
EMBL; AY942288; AAY22680.1; -; Genomic_DNA.
EMBL; AY942289; AAY22681.1; -; Genomic_DNA.
EMBL; AY942290; AAY22682.1; -; Genomic_DNA.
EMBL; AY942291; AAY22683.1; -; Genomic_DNA.
EMBL; AY942292; AAY22684.1; -; Genomic_DNA.
EMBL; AY942293; AAY22685.1; -; Genomic_DNA.
EMBL; AY942294; AAY22686.1; -; Genomic_DNA.
EMBL; AY942295; AAY22687.1; -; Genomic_DNA.
EMBL; AY942296; AAY22688.1; -; Genomic_DNA.
EMBL; AY942297; AAY22689.1; -; Genomic_DNA.
EMBL; AY942298; AAY22690.1; -; Genomic_DNA.
EMBL; AY942299; AAY22691.1; -; Genomic_DNA.
EMBL; AY942300; AAY22692.1; -; Genomic_DNA.
EMBL; AY942301; AAY22693.1; -; Genomic_DNA.
EMBL; AY942302; AAY22694.1; -; Genomic_DNA.
EMBL; AY942303; AAY22695.1; -; Genomic_DNA.
EMBL; AY942304; AAY22696.1; -; Genomic_DNA.
EMBL; AY942305; AAY22697.1; -; Genomic_DNA.
EMBL; AY942306; AAY22698.1; -; Genomic_DNA.
EMBL; AY942307; AAY22699.1; -; Genomic_DNA.
EMBL; AY942308; AAY22700.1; -; Genomic_DNA.
EMBL; AY942309; AAY22701.1; -; Genomic_DNA.
EMBL; AY942310; AAY22702.1; -; Genomic_DNA.
EMBL; AY942311; AAY22703.1; -; Genomic_DNA.
EMBL; AY942312; AAY22704.1; -; Genomic_DNA.
EMBL; AY942313; AAY22705.1; -; Genomic_DNA.
EMBL; AY942314; AAY22706.1; -; Genomic_DNA.
EMBL; AY942315; AAY22707.1; -; Genomic_DNA.
EMBL; AY942316; AAY22708.1; -; Genomic_DNA.
EMBL; AY942317; AAY22709.1; -; Genomic_DNA.
EMBL; AY942318; AAY22710.1; -; Genomic_DNA.
EMBL; AY942319; AAY22711.1; -; Genomic_DNA.
EMBL; AY942320; AAY22712.1; -; Genomic_DNA.
EMBL; AY942321; AAY22713.1; -; Genomic_DNA.
EMBL; AY942322; AAY22714.1; -; Genomic_DNA.
EMBL; AY942323; AAY22715.1; -; Genomic_DNA.
EMBL; AY942324; AAY22716.1; -; Genomic_DNA.
EMBL; AY942325; AAY22717.1; -; Genomic_DNA.
EMBL; AY942326; AAY22718.1; -; Genomic_DNA.
EMBL; AY942327; AAY22719.1; -; Genomic_DNA.
EMBL; AY942328; AAY22720.1; -; Genomic_DNA.
EMBL; AY942329; AAY22721.1; -; Genomic_DNA.
EMBL; AY942330; AAY22722.1; -; Genomic_DNA.
EMBL; AY942331; AAY22723.1; -; Genomic_DNA.
EMBL; AY942332; AAY22724.1; -; Genomic_DNA.
EMBL; AY942333; AAY22725.1; -; Genomic_DNA.
EMBL; AY942334; AAY22726.1; -; Genomic_DNA.
EMBL; AY942335; AAY22727.1; -; Genomic_DNA.
EMBL; AY942336; AAY22728.1; -; Genomic_DNA.
EMBL; AY942337; AAY22729.1; -; Genomic_DNA.
EMBL; AY942338; AAY22730.1; -; Genomic_DNA.
EMBL; AY942339; AAY22731.1; -; Genomic_DNA.
EMBL; AY942340; AAY22732.1; -; Genomic_DNA.
EMBL; AY942341; AAY22733.1; -; Genomic_DNA.
EMBL; AY942342; AAY22734.1; -; Genomic_DNA.
EMBL; AY942343; AAY22735.1; -; Genomic_DNA.
EMBL; AY942344; AAY22736.1; -; Genomic_DNA.
EMBL; AY942345; AAY22737.1; -; Genomic_DNA.
EMBL; AY942346; AAY22738.1; -; Genomic_DNA.
EMBL; AY942347; AAY22739.1; -; Genomic_DNA.
EMBL; AY942348; AAY22740.1; -; Genomic_DNA.
EMBL; AY942349; AAY22741.1; -; Genomic_DNA.
EMBL; AY942350; AAY22742.1; -; Genomic_DNA.
EMBL; AY942351; AAY22743.1; -; Genomic_DNA.
EMBL; AY942352; AAY22744.1; -; Genomic_DNA.
EMBL; AY942353; AAY22745.1; -; Genomic_DNA.
EMBL; AY942354; AAY22746.1; -; Genomic_DNA.
EMBL; AY942355; AAY22747.1; -; Genomic_DNA.
EMBL; BK006947; DAA10431.1; -; Genomic_DNA.
PIR; S26645; S26645.
RefSeq; NP_014282.1; NM_001182955.1.
ProteinModelPortal; P30952; -.
SMR; P30952; -.
BioGrid; 35709; 32.
IntAct; P30952; 9.
MINT; MINT-4083741; -.
STRING; 4932.YNL117W; -.
MaxQB; P30952; -.
PRIDE; P30952; -.
TopDownProteomics; P30952; -.
EnsemblFungi; YNL117W; YNL117W; YNL117W.
GeneID; 855606; -.
KEGG; sce:YNL117W; -.
EuPathDB; FungiDB:YNL117W; -.
SGD; S000005061; MLS1.
GeneTree; ENSGT00840000131503; -.
InParanoid; P30952; -.
KO; K01638; -.
OMA; DHCAGLN; -.
OrthoDB; EOG092C1NQD; -.
BioCyc; MetaCyc:YNL117W-MONOMER; -.
BioCyc; YEAST:YNL117W-MONOMER; -.
UniPathway; UPA00703; UER00720.
PRO; PR:P30952; -.
Proteomes; UP000002311; Chromosome XIV.
GO; GO:0005829; C:cytosol; IDA:SGD.
GO; GO:0009514; C:glyoxysome; IEA:UniProtKB-SubCell.
GO; GO:0005782; C:peroxisomal matrix; IDA:SGD.
GO; GO:0005777; C:peroxisome; IDA:SGD.
GO; GO:0004474; F:malate synthase activity; IMP:SGD.
GO; GO:0006097; P:glyoxylate cycle; IMP:SGD.
GO; GO:0006099; P:tricarboxylic acid cycle; IEA:UniProtKB-KW.
CDD; cd00727; malate_synt_A; 1.
InterPro; IPR011076; Malate_synth-like.
InterPro; IPR006252; Malate_synthA.
InterPro; IPR001465; Malate_synthase.
InterPro; IPR019830; Malate_synthase_CS.
PANTHER; PTHR42902; PTHR42902; 1.
Pfam; PF01274; Malate_synthase; 1.
PIRSF; PIRSF001363; Malate_synth; 1.
SUPFAM; SSF51645; SSF51645; 1.
TIGRFAMs; TIGR01344; malate_syn_A; 1.
PROSITE; PS00510; MALATE_SYNTHASE; 1.
1: Evidence at protein level;
Complete proteome; Glyoxylate bypass; Glyoxysome; Peroxisome;
Reference proteome; Transferase; Tricarboxylic acid cycle.
CHAIN 1 554 Malate synthase 1, glyoxysomal.
/FTId=PRO_0000166864.
MOTIF 552 554 Microbody targeting signal.
{ECO:0000255}.
ACT_SITE 177 177 Proton acceptor. {ECO:0000250}.
ACT_SITE 457 457 Proton donor. {ECO:0000250}.
VARIANT 118 118 A -> T (in strain: Awamori-1, AKU-4011,
K1, K5, NRIC 23, NRIC 1413 and NRIC
1685). {ECO:0000269|PubMed:16103919}.
VARIANT 199 199 I -> V (in strain: Pasteur Red).
{ECO:0000269|PubMed:16103919}.
VARIANT 217 217 G -> C (in strain: YJM326).
{ECO:0000269|PubMed:18780730}.
VARIANT 253 253 T -> S (in strain: Levuline ALS, Lalvin
CY-3079, Cote des Blancs, I14, M1, M11,
M12, M13, M15, M2, M20, M21, M22, M24,
M29, M3, M30, M31, M32, M33, M34, M4, M5,
M6, M7, M8, M9, NRRL Y-1438, NRRL YB-
1952, NRRL Y-2411, Pasteur Red, UCD 51,
UCD 2120, UCD 175, UCD 529, UCD 765, UCD
781, UCD 820, UCD 762, YJM269, YJM270,
YJM308, YJM326, YJM434 and YJM1129).
{ECO:0000269|PubMed:16103919,
ECO:0000269|PubMed:18780730}.
VARIANT 310 310 N -> D (in strain: SK1, V1-09, YJM269,
YJM270, YJM280, YJM320, YJM326, YJM339,
YJM627 and YJM1129).
{ECO:0000269|PubMed:18780730}.
VARIANT 541 541 I -> V (in strain: YJM269 and YJM270).
{ECO:0000269|PubMed:18780730}.
SEQUENCE 554 AA; 62791 MW; 98E698E86E59C480 CRC64;
MVKVSLDNVK LLVDVDKEPF FKPSSTTVGD ILTKDALEFI VLLHRTFNNK RKQLLENRQV
VQKKLDSGSY HLDFLPETAN IRNDPTWQGP ILAPGLINRS TEITGPPLRN MLINALNAPV
NTYMTDFEDS ASPTWNNMVY GQVNLYDAIR NQIDFDTPRK SYKLNGNVAN LPTIIVRPRG
WHMVEKHLYV DDEPISASIF DFGLYFYHNA KELIKLGKGP YFYLPKMEHH LEAKLWNDVF
CVAQDYIGIP RGTIRATVLI ETLPAAFQME EIIYQLRQHS SGLNCGRWDY IFSTIKRLRN
DPNHILPNRN QVTMTSPFMD AYVKRLINTC HRRGVHAMGG MAAQIPIKDD PAANEKAMTK
VRNDKIRELT NGHDGSWVAH PALAPICNEV FINMGTPNQI YFIPENVVTA ANLLETKIPN
GEITTEGIVQ NLDIGLQYME AWLRGSGCVP INNLMEDAAT AEVSRCQLYQ WVKHGVTLKD
TGEKVTPELT EKILKEQVER LSKASPLGDK NKFALAAKYF LPEIRGEKFS EFLTTLLYDE
IVSTKATPTD LSKL


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