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Malic enzyme

 Q2QBM1_DROME            Unreviewed;       578 AA.
Q2QBM1;
24-JAN-2006, integrated into UniProtKB/TrEMBL.
24-JAN-2006, sequence version 1.
22-NOV-2017, entry version 112.
RecName: Full=Malic enzyme {ECO:0000256|RuleBase:RU003426};
Name=Men {ECO:0000313|EMBL:ABA19466.1,
ECO:0000313|FlyBase:FBgn0002719};
Synonyms=anon-WO0118547.278 {ECO:0000313|EMBL:AGB95891.1},
Dmel\CG10120 {ECO:0000313|EMBL:AGB95891.1},
MDH {ECO:0000313|EMBL:AGB95891.1},
Mdh-NADP {ECO:0000313|EMBL:AGB95891.1},
ME {ECO:0000313|EMBL:AGB95891.1}, Me {ECO:0000313|EMBL:AGB95891.1},
mem {ECO:0000313|EMBL:AGB95891.1}, MEN {ECO:0000313|EMBL:AGB95891.1},
men {ECO:0000313|EMBL:AGB95891.1};
ORFNames=CG10120 {ECO:0000313|EMBL:AGB95891.1,
ECO:0000313|FlyBase:FBgn0002719},
Dmel_CG10120 {ECO:0000313|EMBL:AGB95891.1};
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227 {ECO:0000313|EMBL:ABA19466.1};
[1] {ECO:0000313|EMBL:AGB95891.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L.,
Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J.,
Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O.,
Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[2] {ECO:0000313|EMBL:AGB95891.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537568;
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
"Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence.";
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002).
[3] {ECO:0000313|EMBL:AGB95891.1, ECO:0000313|Proteomes:UP000000803}
GENOME REANNOTATION.
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[4] {ECO:0000313|EMBL:AGB95891.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537573;
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M.,
Ashburner M., Celniker S.E.;
"The transposable elements of the Drosophila melanogaster euchromatin:
a genomics perspective.";
Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002).
[5] {ECO:0000313|EMBL:AGB95891.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537574;
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
Karpen G.H.;
"Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly.";
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002).
[6] {ECO:0000313|EMBL:ABA19466.1}
NUCLEOTIDE SEQUENCE.
STRAIN=Dpf_23.1 {ECO:0000313|EMBL:ABA19466.1},
Dpf_38.3 {ECO:0000313|EMBL:ABA19467.1},
Dpf_4.2 {ECO:0000313|EMBL:ABA19465.1},
Dpf_48.1 {ECO:0000313|EMBL:ABA19468.1},
Dpf_74.2 {ECO:0000313|EMBL:ABA19469.1},
Dpf_84.3 {ECO:0000313|EMBL:ABA19470.1},
Hfl97_15 {ECO:0000313|EMBL:ABA19478.1},
Hfl97_16 {ECO:0000313|EMBL:ABA19479.1},
Hfl97_18 {ECO:0000313|EMBL:ABA19481.1},
Hfl97_34 {ECO:0000313|EMBL:ABA19484.1},
Hfl97_46 {ECO:0000313|EMBL:ABA19485.1},
Hfl97_8 {ECO:0000313|EMBL:ABA19475.1},
Hfl97_93 {ECO:0000313|EMBL:ABA19487.1}, and
Z {ECO:0000313|EMBL:ABA19488.1};
PubMed=16143603; DOI=10.1534/genetics.105.048249;
Merritt T.J., Duvernell D., Eanes W.F.;
"Natural and synthetic alleles provide complementary insights into the
nature of selection acting on the Men polymorphism of Drosophila
melanogaster.";
Genetics 171:1707-1718(2005).
[7] {ECO:0000313|EMBL:AGB95891.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=16110336; DOI=10.1371/journal.pcbi.0010022;
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
Ashburner M., Anxolabehere D.;
"Combined evidence annotation of transposable elements in genome
sequences.";
PLoS Comput. Biol. 1:166-175(2005).
[8] {ECO:0000313|EMBL:AGB95891.1}
NUCLEOTIDE SEQUENCE.
Berkeley Drosophila Genome Project;
Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R.,
Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E.,
Yu C., Rubin G.;
"Drosophila melanogaster release 4 sequence.";
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
[9] {ECO:0000313|EMBL:AGB95891.1}
NUCLEOTIDE SEQUENCE.
Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S.,
Svirskas R., Rubin G.;
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
[10] {ECO:0000313|EMBL:AGB95891.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569856; DOI=10.1126/science.1139815;
Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
"The Release 5.1 annotation of Drosophila melanogaster
heterochromatin.";
Science 316:1586-1591(2007).
[11] {ECO:0000313|EMBL:AGB95891.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569867; DOI=10.1126/science.1139816;
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
Dimitri P., Karpen G.H., Celniker S.E.;
"Sequence finishing and mapping of Drosophila melanogaster
heterochromatin.";
Science 316:1625-1628(2007).
[12] {ECO:0000313|EMBL:AFB81553.1}
NUCLEOTIDE SEQUENCE.
STRAIN=SON03 {ECO:0000313|EMBL:AFB81553.1},
SON10 {ECO:0000313|EMBL:AFB81557.1},
SON21 {ECO:0000313|EMBL:AFB81566.1},
SON22 {ECO:0000313|EMBL:AFB81567.1},
SON23 {ECO:0000313|EMBL:AFB81568.1},
SON24 {ECO:0000313|EMBL:AFB81569.1},
SON40 {ECO:0000313|EMBL:AFB81580.1},
SON45 {ECO:0000313|EMBL:AFB81582.1}, and
SON48 {ECO:0000313|EMBL:AFB81585.1};
PubMed=22733181; DOI=10.1007/s10528-012-9523-3;
Rzezniczak T.Z., Lum T.E., Harniman R., Merritt T.J.;
"A Combination of Structural and Cis-Regulatory Factors Drives
Biochemical Differences in Drosophila melanogaster Malic Enzyme.";
Biochem. Genet. 50:823-837(2012).
[13] {ECO:0000313|EMBL:AGB95891.1}
NUCLEOTIDE SEQUENCE.
FlyBase;
Submitted (DEC-2016) to the EMBL/GenBank/DDBJ databases.
-!- COFACTOR:
Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
Evidence={ECO:0000256|PIRSR:PIRSR000106-3};
Name=Mn(2+); Xref=ChEBI:CHEBI:29035;
Evidence={ECO:0000256|PIRSR:PIRSR000106-3};
Note=Divalent metal cations. Prefers magnesium or manganese.
{ECO:0000256|PIRSR:PIRSR000106-3};
-!- SIMILARITY: Belongs to the malic enzymes family.
{ECO:0000256|RuleBase:RU003426}.
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EMBL; DQ148978; ABA19465.1; -; mRNA.
EMBL; DQ148979; ABA19466.1; -; mRNA.
EMBL; DQ148980; ABA19467.1; -; mRNA.
EMBL; DQ148981; ABA19468.1; -; mRNA.
EMBL; DQ148982; ABA19469.1; -; mRNA.
EMBL; DQ148983; ABA19470.1; -; mRNA.
EMBL; DQ148988; ABA19475.1; -; mRNA.
EMBL; DQ148991; ABA19478.1; -; mRNA.
EMBL; DQ148992; ABA19479.1; -; mRNA.
EMBL; DQ148994; ABA19481.1; -; mRNA.
EMBL; DQ148997; ABA19484.1; -; mRNA.
EMBL; DQ148998; ABA19485.1; -; mRNA.
EMBL; DQ149000; ABA19487.1; -; mRNA.
EMBL; DQ149001; ABA19488.1; -; mRNA.
EMBL; DQ149002; ABA19489.1; -; mRNA.
EMBL; DQ149003; ABA19490.1; -; mRNA.
EMBL; DQ149004; ABA19491.1; -; mRNA.
EMBL; DQ149005; ABA19492.1; -; mRNA.
EMBL; DQ149006; ABA19493.1; -; mRNA.
EMBL; DQ149007; ABA19494.1; -; mRNA.
EMBL; DQ149008; ABA19495.1; -; mRNA.
EMBL; DQ149009; ABA19496.1; -; mRNA.
EMBL; JQ690827; AFB81553.1; -; mRNA.
EMBL; JQ690831; AFB81557.1; -; mRNA.
EMBL; JQ690840; AFB81566.1; -; mRNA.
EMBL; JQ690841; AFB81567.1; -; mRNA.
EMBL; JQ690842; AFB81568.1; -; mRNA.
EMBL; JQ690843; AFB81569.1; -; mRNA.
EMBL; JQ690854; AFB81580.1; -; mRNA.
EMBL; JQ690856; AFB81582.1; -; mRNA.
EMBL; JQ690859; AFB81585.1; -; mRNA.
EMBL; AE014297; AGB95891.1; -; Genomic_DNA.
RefSeq; NP_001262509.1; NM_001275580.1.
UniGene; Dm.1769; -.
EnsemblMetazoa; FBtr0082660; FBpp0082129; FBgn0002719.
EnsemblMetazoa; FBtr0330025; FBpp0303058; FBgn0002719.
GeneID; 47173; -.
KEGG; dme:Dmel_CG10120; -.
CTD; 47173; -.
FlyBase; FBgn0002719; Men.
eggNOG; KOG1257; Eukaryota.
eggNOG; COG0281; LUCA.
GeneTree; ENSGT00390000000754; -.
KO; K00029; -.
OrthoDB; EOG091G04H9; -.
GenomeRNAi; 47173; -.
Proteomes; UP000000803; Chromosome 3R.
Bgee; FBgn0002719; -.
GO; GO:0005829; C:cytosol; IDA:FlyBase.
GO; GO:0004471; F:malate dehydrogenase (decarboxylating) (NAD+) activity; IEA:InterPro.
GO; GO:0004473; F:malate dehydrogenase (decarboxylating) (NADP+) activity; IMP:FlyBase.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO; GO:0051287; F:NAD binding; IEA:InterPro.
GO; GO:0008340; P:determination of adult lifespan; IMP:FlyBase.
GO; GO:0006108; P:malate metabolic process; IMP:FlyBase.
GO; GO:0010941; P:regulation of cell death; IMP:FlyBase.
GO; GO:0030431; P:sleep; IMP:FlyBase.
Gene3D; 3.40.50.10380; -; 1.
InterPro; IPR015884; Malic_enzyme_CS.
InterPro; IPR012301; Malic_N_dom.
InterPro; IPR037062; Malic_N_dom_sf.
InterPro; IPR012302; Malic_NAD-bd.
InterPro; IPR001891; Malic_OxRdtase.
InterPro; IPR036291; NAD(P)-bd_dom_sf.
Pfam; PF00390; malic; 1.
Pfam; PF03949; Malic_M; 1.
PIRSF; PIRSF000106; ME; 1.
PRINTS; PR00072; MALOXRDTASE.
SMART; SM01274; malic; 1.
SMART; SM00919; Malic_M; 1.
SUPFAM; SSF51735; SSF51735; 1.
PROSITE; PS00331; MALIC_ENZYMES; 1.
1: Evidence at protein level;
Complete proteome {ECO:0000313|Proteomes:UP000000803};
Metal-binding {ECO:0000256|PIRSR:PIRSR000106-3,
ECO:0000256|RuleBase:RU003426};
Oxidoreductase {ECO:0000256|RuleBase:RU003426,
ECO:0000313|EMBL:AFB81553.1};
Proteomics identification {ECO:0000213|PeptideAtlas:Q2QBM1};
Reference proteome {ECO:0000313|Proteomes:UP000000803}.
DOMAIN 97 278 malic. {ECO:0000259|SMART:SM01274}.
DOMAIN 288 541 Malic_M. {ECO:0000259|SMART:SM00919}.
ACT_SITE 120 120 Proton donor.
{ECO:0000256|PIRSR:PIRSR000106-1}.
ACT_SITE 191 191 Proton acceptor.
{ECO:0000256|PIRSR:PIRSR000106-1}.
METAL 263 263 Divalent metal cation.
{ECO:0000256|PIRSR:PIRSR000106-3}.
METAL 264 264 Divalent metal cation.
{ECO:0000256|PIRSR:PIRSR000106-3}.
METAL 287 287 Divalent metal cation.
{ECO:0000256|PIRSR:PIRSR000106-3}.
SEQUENCE 578 AA; 63972 MW; 6EEECFB2B2AA9B78 CRC64;
MSKPDSKLDK YAQRDRLGLW GTGDNEVVGS LSGFTRLLDK RYSKGLAFTH EERQQLGIHG
MLPYVVREPS EQVEHCRALL ARLDQDLDKY MYLISLSERN ERLFYNVLSS DIAYMMPLVY
TPTVGLACQR YSLIHQNAKG MFISIKDKGH IYDVLKNWPE TDVRAIVVTD GERILGLGDL
GANGMGIPVG KLSLYTALAG IKPSQCLPIT LDVGTNTESI LEDPLYIGLR ERRATGDLYD
EFIDEFMHAC VRRFGQNCLI QFEDFANANA FRLLSKYRDS FCTFNDDIQG TASVAVAGLL
ASLKIKKTQL KDNTLLFLGA GEAALGIANL CLMAMKVEGL TEEEAKARIW MVDSRGVITR
DRPKGGLTEH KLHFAQLHEP IDTLAEAVRK VRPNVLIGAA AQGGAFNQEI LELMADINET
PIIFALSNPT SKAECTAEEA YTYTKGRCIF ASGSPFAPVT YNNKKFYPGQ GNNSYIFPGV
ALGVLCAGML NIPEQVFLVA AERLAELVSK DDLAKGSLYP PLSSIVSCSM AIAERIVEYA
YKNGLATVRP EPVNKLAFIK AQMYDLDYPR SVPATYKM


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