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Mediator of RNA polymerase II transcription subunit 12 (Mediator complex subunit 12) (OPA-containing protein) (Thyroid hormone receptor-associated protein complex 230 kDa component) (Trap230) (Trinucleotide repeat-containing gene 11 protein)

 MED12_MOUSE             Reviewed;        2190 AA.
A2AGH6; A2AGH7; O88542; Q571H3; Q6PGB4; Q6PGD8;
15-JAN-2008, integrated into UniProtKB/Swiss-Prot.
20-FEB-2007, sequence version 1.
25-OCT-2017, entry version 88.
RecName: Full=Mediator of RNA polymerase II transcription subunit 12;
AltName: Full=Mediator complex subunit 12;
AltName: Full=OPA-containing protein;
AltName: Full=Thyroid hormone receptor-associated protein complex 230 kDa component;
Short=Trap230;
AltName: Full=Trinucleotide repeat-containing gene 11 protein;
Name=Med12; Synonyms=Kiaa0192, Mopa, Tnrc11, Trap230;
Mus musculus (Mouse).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
NCBI_TaxID=10090;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=C57BL/6J;
PubMed=19468303; DOI=10.1371/journal.pbio.1000112;
Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S.,
She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W.,
Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T.,
Zhou S., Teague B., Potamousis K., Churas C., Place M., Herschleb J.,
Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z.,
Lindblad-Toh K., Eichler E.E., Ponting C.P.;
"Lineage-specific biology revealed by a finished genome assembly of
the mouse.";
PLoS Biol. 7:E1000112-E1000112(2009).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3), AND NUCLEOTIDE
SEQUENCE [LARGE SCALE MRNA] OF 33-2190 (ISOFORM 1).
STRAIN=C57BL/6J; TISSUE=Brain;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[3]
NUCLEOTIDE SEQUENCE [MRNA] OF 33-2190 (ISOFORM 2).
PubMed=9702738; DOI=10.1038/sj.mp.4000442;
Philibert R.A., King B.H., Cook E.H., Lee Y.-H., Stubblefield B.,
Damschroder-Williams P., Dea C., Palotie A., Tengstrom C.,
Martin B.M., Ginns E.I.;
"Association of an X-chromosome dodecamer insertional variant allele
with mental retardation.";
Mol. Psychiatry 3:303-309(1998).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1045-2190 (ISOFORM 1).
TISSUE=Spleen;
Okazaki N., Kikuno R.F., Ohara R., Inamoto S., Nagase T., Ohara O.,
Koga H.;
"Prediction of the coding sequences of mouse homologues of KIAA gene.
The complete nucleotide sequences of mouse KIAA-homologous cDNAs
identified by screening of terminal sequences of cDNA clones randomly
sampled from size-fractionated libraries.";
Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases.
[5]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-636, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Brain, Brown adipose tissue, Kidney, Lung, Spleen, and Testis;
PubMed=21183079; DOI=10.1016/j.cell.2010.12.001;
Huttlin E.L., Jedrychowski M.P., Elias J.E., Goswami T., Rad R.,
Beausoleil S.A., Villen J., Haas W., Sowa M.E., Gygi S.P.;
"A tissue-specific atlas of mouse protein phosphorylation and
expression.";
Cell 143:1174-1189(2010).
[6]
ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-80 AND LYS-1800, AND
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Embryonic fibroblast;
PubMed=23806337; DOI=10.1016/j.molcel.2013.06.001;
Park J., Chen Y., Tishkoff D.X., Peng C., Tan M., Dai L., Xie Z.,
Zhang Y., Zwaans B.M., Skinner M.E., Lombard D.B., Zhao Y.;
"SIRT5-mediated lysine desuccinylation impacts diverse metabolic
pathways.";
Mol. Cell 50:919-930(2013).
[7]
METHYLATION [LARGE SCALE ANALYSIS] AT ARG-1901 AND ARG-1912, AND
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Embryo;
PubMed=24129315; DOI=10.1074/mcp.O113.027870;
Guo A., Gu H., Zhou J., Mulhern D., Wang Y., Lee K.A., Yang V.,
Aguiar M., Kornhauser J., Jia X., Ren J., Beausoleil S.A., Silva J.C.,
Vemulapalli V., Bedford M.T., Comb M.J.;
"Immunoaffinity enrichment and mass spectrometry analysis of protein
methylation.";
Mol. Cell. Proteomics 13:372-387(2014).
-!- FUNCTION: Component of the Mediator complex, a coactivator
involved in the regulated transcription of nearly all RNA
polymerase II-dependent genes. Mediator functions as a bridge to
convey information from gene-specific regulatory proteins to the
basal RNA polymerase II transcription machinery. Mediator is
recruited to promoters by direct interactions with regulatory
proteins and serves as a scaffold for the assembly of a functional
preinitiation complex with RNA polymerase II and the general
transcription factors. This subunit may specifically regulate
transcription of targets of the Wnt signaling pathway and SHH
signaling pathway (By similarity). {ECO:0000250}.
-!- SUBUNIT: Component of the Mediator complex, which is composed of
MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13,
MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21,
MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31,
CCNC, CDK8 and CDC2L6/CDK11. The MED12, MED13, CCNC and CDK8
subunits form a distinct module termed the CDK8 module. Mediator
containing the CDK8 module is less active than Mediator lacking
this module in supporting transcriptional activation. Individual
preparations of the Mediator complex lacking one or more distinct
subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and
TRAP. Also interacts with CTNNB1 and GLI3 (By similarity).
{ECO:0000250}.
-!- INTERACTION:
Q8R3L8:Cdk8; NbExp=3; IntAct=EBI-5744969, EBI-5745402;
P37173:TGFBR2 (xeno); NbExp=3; IntAct=EBI-5744969, EBI-296151;
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=3;
Name=1;
IsoId=A2AGH6-1; Sequence=Displayed;
Name=2;
IsoId=A2AGH6-2; Sequence=VSP_029978, VSP_029979, VSP_029980;
Note=No experimental confirmation available.;
Name=3;
IsoId=A2AGH6-3; Sequence=VSP_029977, VSP_029978;
Note=No experimental confirmation available.;
-!- SIMILARITY: Belongs to the Mediator complex subunit 12 family.
{ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=AAC83164.1; Type=Erroneous initiation; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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EMBL; AL683892; CAM24445.1; -; Genomic_DNA.
EMBL; AL683892; CAM24446.1; -; Genomic_DNA.
EMBL; BC057085; AAH57085.1; -; mRNA.
EMBL; BC057119; AAH57119.1; -; mRNA.
EMBL; AF071310; AAC83164.1; ALT_INIT; mRNA.
EMBL; AK220216; BAD90141.1; -; mRNA.
CCDS; CCDS41078.1; -. [A2AGH6-1]
RefSeq; NP_067496.2; NM_021521.2. [A2AGH6-1]
UniGene; Mm.20873; -.
UniGene; Mm.490933; -.
ProteinModelPortal; A2AGH6; -.
BioGrid; 208491; 1.
CORUM; A2AGH6; -.
DIP; DIP-59233N; -.
IntAct; A2AGH6; 11.
MINT; MINT-4105605; -.
STRING; 10090.ENSMUSP00000085260; -.
iPTMnet; A2AGH6; -.
PhosphoSitePlus; A2AGH6; -.
MaxQB; A2AGH6; -.
PaxDb; A2AGH6; -.
PeptideAtlas; A2AGH6; -.
PRIDE; A2AGH6; -.
Ensembl; ENSMUST00000087948; ENSMUSP00000085260; ENSMUSG00000079487. [A2AGH6-1]
Ensembl; ENSMUST00000087956; ENSMUSP00000085269; ENSMUSG00000079487. [A2AGH6-2]
GeneID; 59024; -.
KEGG; mmu:59024; -.
UCSC; uc009txe.1; mouse. [A2AGH6-1]
UCSC; uc009txf.1; mouse. [A2AGH6-2]
CTD; 9968; -.
MGI; MGI:1926212; Med12.
eggNOG; KOG3598; Eukaryota.
eggNOG; ENOG410XP2V; LUCA.
GeneTree; ENSGT00440000037505; -.
HOGENOM; HOG000231423; -.
HOVERGEN; HBG052447; -.
InParanoid; A2AGH6; -.
KO; K15162; -.
OMA; MAQVFEG; -.
OrthoDB; EOG091G00I6; -.
TreeFam; TF324178; -.
Reactome; R-MMU-212436; Generic Transcription Pathway.
Reactome; R-MMU-381340; Transcriptional regulation of white adipocyte differentiation.
Reactome; R-MMU-442533; Transcriptional Regulation of Adipocyte Differentiation in 3T3-L1 Pre-adipocytes.
ChiTaRS; Med12; mouse.
PRO; PR:A2AGH6; -.
Proteomes; UP000000589; Chromosome X.
Bgee; ENSMUSG00000079487; -.
ExpressionAtlas; A2AGH6; baseline and differential.
Genevisible; A2AGH6; MM.
GO; GO:0016592; C:mediator complex; IDA:MGI.
GO; GO:0016020; C:membrane; ISO:MGI.
GO; GO:0005654; C:nucleoplasm; TAS:Reactome.
GO; GO:0005634; C:nucleus; ISO:MGI.
GO; GO:0000151; C:ubiquitin ligase complex; IEA:Ensembl.
GO; GO:0008013; F:beta-catenin binding; IEA:InterPro.
GO; GO:0003682; F:chromatin binding; IDA:MGI.
GO; GO:0008022; F:protein C-terminus binding; ISO:MGI.
GO; GO:0019904; F:protein domain specific binding; ISO:MGI.
GO; GO:0004872; F:receptor activity; ISO:MGI.
GO; GO:0000980; F:RNA polymerase II distal enhancer sequence-specific DNA binding; IDA:MGI.
GO; GO:0001105; F:RNA polymerase II transcription coactivator activity; IBA:GO_Central.
GO; GO:0001104; F:RNA polymerase II transcription cofactor activity; ISO:MGI.
GO; GO:0046966; F:thyroid hormone receptor binding; ISO:MGI.
GO; GO:0003713; F:transcription coactivator activity; ISO:MGI.
GO; GO:0003712; F:transcription cofactor activity; ISO:MGI.
GO; GO:0008134; F:transcription factor binding; IPI:MGI.
GO; GO:0001190; F:transcriptional activator activity, RNA polymerase II transcription factor binding; IGI:MGI.
GO; GO:0061630; F:ubiquitin protein ligase activity; IEA:Ensembl.
GO; GO:0030521; P:androgen receptor signaling pathway; ISO:MGI.
GO; GO:0090245; P:axis elongation involved in somitogenesis; IMP:MGI.
GO; GO:0060070; P:canonical Wnt signaling pathway; IMP:MGI.
GO; GO:1990403; P:embryonic brain development; IMP:MGI.
GO; GO:0048702; P:embryonic neurocranium morphogenesis; IMP:MGI.
GO; GO:0048568; P:embryonic organ development; IMP:MGI.
GO; GO:0007492; P:endoderm development; IMP:MGI.
GO; GO:0007507; P:heart development; IMP:MGI.
GO; GO:0030518; P:intracellular steroid hormone receptor signaling pathway; ISO:MGI.
GO; GO:0030178; P:negative regulation of Wnt signaling pathway; ISO:MGI.
GO; GO:0001843; P:neural tube closure; IMP:MGI.
GO; GO:0021915; P:neural tube development; IMP:MGI.
GO; GO:0014003; P:oligodendrocyte development; IMP:MGI.
GO; GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; ISO:MGI.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; ISO:MGI.
GO; GO:0036342; P:post-anal tail morphogenesis; IMP:MGI.
GO; GO:0014044; P:Schwann cell development; IMP:MGI.
GO; GO:0001756; P:somitogenesis; IMP:MGI.
GO; GO:0021510; P:spinal cord development; IMP:MGI.
GO; GO:0019827; P:stem cell population maintenance; IMP:MGI.
GO; GO:0006367; P:transcription initiation from RNA polymerase II promoter; ISO:MGI.
GO; GO:0060071; P:Wnt signaling pathway, planar cell polarity pathway; IMP:MGI.
InterPro; IPR019035; Mediator_Med12.
InterPro; IPR021989; Mediator_Med12_catenin-bd.
InterPro; IPR021990; Mediator_Med12_LCEWAV.
Pfam; PF09497; Med12; 1.
Pfam; PF12145; Med12-LCEWAV; 1.
Pfam; PF12144; Med12-PQL; 1.
SMART; SM01281; Med12; 1.
1: Evidence at protein level;
Acetylation; Activator; Alternative splicing; Complete proteome;
Methylation; Nucleus; Phosphoprotein; Reference proteome; Repressor;
Transcription; Transcription regulation.
CHAIN 1 2190 Mediator of RNA polymerase II
transcription subunit 12.
/FTId=PRO_0000312957.
REGION 1617 2063 Interaction with CTNNB1 and GLI3.
{ECO:0000250}.
MOD_RES 80 80 N6-acetyllysine.
{ECO:0000244|PubMed:23806337}.
MOD_RES 166 166 Phosphotyrosine.
{ECO:0000250|UniProtKB:Q93074}.
MOD_RES 636 636 Phosphoserine.
{ECO:0000244|PubMed:21183079}.
MOD_RES 666 666 Phosphoserine.
{ECO:0000250|UniProtKB:Q93074}.
MOD_RES 699 699 Phosphoserine.
{ECO:0000250|UniProtKB:Q93074}.
MOD_RES 701 701 Phosphoserine.
{ECO:0000250|UniProtKB:Q93074}.
MOD_RES 1259 1259 Phosphoserine.
{ECO:0000250|UniProtKB:Q93074}.
MOD_RES 1270 1270 Phosphoserine.
{ECO:0000250|UniProtKB:Q93074}.
MOD_RES 1800 1800 N6-acetyllysine.
{ECO:0000244|PubMed:23806337}.
MOD_RES 1901 1901 Asymmetric dimethylarginine; alternate.
{ECO:0000244|PubMed:24129315}.
MOD_RES 1901 1901 Omega-N-methylarginine; alternate.
{ECO:0000244|PubMed:24129315}.
MOD_RES 1912 1912 Omega-N-methylarginine.
{ECO:0000244|PubMed:24129315}.
MOD_RES 1999 1999 Asymmetric dimethylarginine.
{ECO:0000250|UniProtKB:Q93074}.
MOD_RES 2020 2020 Asymmetric dimethylarginine.
{ECO:0000250|UniProtKB:Q93074}.
VAR_SEQ 1 1321 Missing (in isoform 3).
{ECO:0000303|PubMed:15489334}.
/FTId=VSP_029977.
VAR_SEQ 1919 1921 Missing (in isoform 2 and isoform 3).
{ECO:0000303|PubMed:15489334,
ECO:0000303|PubMed:9702738}.
/FTId=VSP_029978.
VAR_SEQ 1946 1946 S -> SQLSSPSL (in isoform 2).
{ECO:0000303|PubMed:9702738}.
/FTId=VSP_029979.
VAR_SEQ 1966 1990 Missing (in isoform 2).
{ECO:0000303|PubMed:9702738}.
/FTId=VSP_029980.
CONFLICT 674 674 S -> T (in Ref. 2; AAC83164).
{ECO:0000305}.
CONFLICT 1597 1597 A -> T (in Ref. 4; BAD90141).
{ECO:0000305}.
CONFLICT 2171 2171 L -> I (in Ref. 2; AAC83164).
{ECO:0000305}.
SEQUENCE 2190 AA; 244561 MW; 146E05DCCFF38DB4 CRC64;
MAAFGILSYE HRPLKRLRLG PPDVYPQDPK QKEDELTALN VKQGFNNQPA VSGDEHGSAK
NVNFNPAKIS SNFSSIIAEK LRCNTLSDTG RRKSLMNQKD NFWLVTARSQ SAINTWFTDL
AGTKPLTHLA KKVPIFSKKE EVFGYLAKYT VPVMRAAWLI KMTCAYYAAM SETKVKKKNT
ADPFTEWTQI ITKYLWEQLQ KMAEYYRPGP AGSGGCGSTI GPLPHDVEMA IRQWDYNEKL
ALFMFQDGML DRHEFLTWVL ECFEKIRPGE DELLKLLLPL LLRYSGEFVQ SAYLSRRLAY
FCTRRLALQL DGVSSHSSHV IAAQSTSSLP TTPAPQPPTS STPSTPFSDL LMCPQHRPLV
FGLSCILQTI LLCCPSALVW HYSLTDSRIK TGSPLDHLPI APSNLPMPEG NSAFTQQVRA
KLREIEQQIK ERGQAVEVRW SFDKCQEATA GFTIGRVLHT LEVLDSHSFE RSDFSNSLDS
LCNRIFGLGP SKDGHEISSD DDAVVSLLCE WAVSCKRSGR HRAMVVAKLL EKRQAEIEAE
RCGESEAADE KGSVASGSLS APSAPIFQDV LLQFLDTQAP MLTDPRSESE RVEFFNLVLL
FCELIRHDVF SHNMYTCTLI SRGDLAFGAP GPRPPSPFDD PTDDPERKEA EGSSSSKLED
PGLSESMDID PSSSVLFEDM EKPDFSLFSP TMPCEGKGSP SPEKPDVEKE VKPPAKEKIE
GTLGILYDQP RHVQYATHFP IPQEESCSHE CNQRLVVLFG VGKQRDDARH AIKKITKDIL
KVLNRKGTAE TDQLAPIVPL NPGDLTFLGG EDGQKRRRNR PEAFPTAEDI FAKFQHLSHY
DQHQVTAQVS RNVLEQITSF ALGMSYHLPL VQHVQFIFDL MEYSLSISGL IDFAIQLLNE
LSVVEAELLL KSSDLVGSYT TSLCLCIVAV LRHYHACLIL NQDQMAQVFE GLCGVVKHGM
NRSDGSSAER CILAYLYDLY TSCSHLKSKF GELFSDFCSK VKNTIYCNVE PSESNMRWAP
EFMIDTLENP AAHTFTYTGL GKSLSENPAN RYSFVCNALM HVCVGHHDPD RVNDIAILCA
ELTGYCKSLS AEWLGVLKAL CCSSNNGTCG FNDLLCNVDV SDLSFHDSLA TFVAILIARQ
CLLLEDLIRC AAIPSLLNAA CSEQDSEPGA RLTCRILLHL FKTPQLNPCQ SDGNKPTVGI
RSSCDRHLLA ASQNRIVDGA VFAVLKAVFV LGDAELKGSG FTVPGGTEEL PEEEGGGGSS
GRRQGGRNIS VETASLDVYA KYVLRSICQQ EWVGERCLKS LCEDSNDLQD PVLSSAQAQR
LMQLICYPHR LLDNEDGENP QRQRIKRILK NLDQWTMRQS SLELQLMIKQ TPNTEMNSLL
ENIAKATIEV FQQSAETGSS SGSTASNMPS SSKTKPVLSS LERSGVWLVA PLIAKLPTSV
QGHVLKAAGE ELEKGQHLGS SSRKERDRQK QKSMSLLSQQ PFLSLVLTCL KGQDEQREGL
LASLHSQVHQ IVINWRENQY LDDCKPKQLM HEALKLRLNL VGGMFDTVQR STQQTTEWAQ
LLLEIIISGT VDMQSNNELF TTVLDMLSVL INGTLAADMS SISQGSMEEN KRAYMNLVKK
LQKDLGERQS DSLEKVHQLL PLPKQNRDVI TCEPQGSLID TKGNKIAGFD SIFKKEGLQV
STKQKISPWE LFEGLKPSTA PLSWAWFGTV RVDRRVARGE EQQRLLLYHT HLRPRPRAYY
LEPLPLPPED EEPPAPALLE PEKKAPEPPK TDKPGAAPPS TEERKKKSTK GKKRSQPATK
NEDYGMGPGR SGPYGVTVPP DLLHHANPGS ISHLSYRQSS MGLYTQNQPL PAGGPRVDPY
RPVRLPMQKL PTRPTYPGVL PTTMSTVMGL EPSSYKTSVY RQQQPTVPQG QRLRQQLQAK
IQSQGMLGQS SVHQMTPSSS YGLQTSQGYT SYVSHVGLQQ HTGPAGTMVP PSYSSQPYQS
THPSTNPTLV DPTRHLQQRP SGYVHQQAPT YGHGLTSTQR FSHQTLQQTP MMGTMTPLSA
QGVQAGVRST SILPEQQQQQ QQQQQQQQQQ QQQQQQQQQQ QQQQQQQQYH IRQQQQQQQM
LRQQQQQQQQ QQQQQQQQQQ QQQQQQQQQP HQQQQQAAPP QPQPQSQPQF QRQGLQQTQQ
QQQTAALVRQ LQQQLSNTQP QPSTNIFGRY


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