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Mediator of RNA polymerase II transcription subunit 16 (Global transcriptional regulator SIN4) (Mediator complex subunit 16) (SNF1 suppressor protein 4) (SWI4 suppressor protein 5) (Transcriptional silencing factor 3) (YGP1 expression regulatory protein 1)

 MED16_YEAST             Reviewed;         974 AA.
P32259; D6W0V7;
01-OCT-1993, integrated into UniProtKB/Swiss-Prot.
01-OCT-1993, sequence version 1.
25-OCT-2017, entry version 136.
RecName: Full=Mediator of RNA polymerase II transcription subunit 16;
AltName: Full=Global transcriptional regulator SIN4;
AltName: Full=Mediator complex subunit 16;
AltName: Full=SNF1 suppressor protein 4;
AltName: Full=SWI4 suppressor protein 5;
AltName: Full=Transcriptional silencing factor 3;
AltName: Full=YGP1 expression regulatory protein 1;
Name=SIN4; Synonyms=BEL2, GAL22, MED16, RYE1, SDI3, SSF5, SSN4, TSF3;
OrderedLocusNames=YNL236W; ORFNames=N1135;
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast).
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces.
NCBI_TaxID=559292;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=YM256;
PubMed=8423805; DOI=10.1128/MCB.13.2.831;
Chen S., West R.W. Jr., Johnson S.L., Gans H., Kruger B., Ma J.;
"TSF3, a global regulatory protein that silences transcription of
yeast GAL genes, also mediates repression by alpha 2 repressor and is
identical to SIN4.";
Mol. Cell. Biol. 13:831-840(1993).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
PubMed=1406639; DOI=10.1128/MCB.12.10.4503;
Jiang Y.W., Stillman D.J.;
"Involvement of the SIN4 global transcriptional regulator in the
chromatin structure of Saccharomyces cerevisiae.";
Mol. Cell. Biol. 12:4503-4514(1992).
[3]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Harashima S., Mabuchi H., Ramash R., Hasebe M., Tanaka A., Oshima Y.;
"BEL2/SIN4/TSF3 encodes a position-dependent general repressor of a
diverse set of genes in yeast.";
Submitted (AUG-1992) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
PubMed=8896273;
DOI=10.1002/(SICI)1097-0061(199609)12:10B<1071::AID-YEA4>3.3.CO;2-J;
Pandolfo D., de Antoni A., Lanfranchi G., Valle G.;
"The DNA sequence of cosmid 14-5 from chromosome XIV reveals 21 open
reading frames including a novel gene encoding a globin-like domain.";
Yeast 12:1071-1076(1996).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ATCC 204508 / S288c;
PubMed=9169873;
Philippsen P., Kleine K., Poehlmann R., Duesterhoeft A., Hamberg K.,
Hegemann J.H., Obermaier B., Urrestarazu L.A., Aert R., Albermann K.,
Altmann R., Andre B., Baladron V., Ballesta J.P.G., Becam A.-M.,
Beinhauer J.D., Boskovic J., Buitrago M.J., Bussereau F., Coster F.,
Crouzet M., D'Angelo M., Dal Pero F., De Antoni A., del Rey F.,
Doignon F., Domdey H., Dubois E., Fiedler T.A., Fleig U., Floeth M.,
Fritz C., Gaillardin C., Garcia-Cantalejo J.M., Glansdorff N.,
Goffeau A., Gueldener U., Herbert C.J., Heumann K., Heuss-Neitzel D.,
Hilbert H., Hinni K., Iraqui Houssaini I., Jacquet M., Jimenez A.,
Jonniaux J.-L., Karpfinger-Hartl L., Lanfranchi G., Lepingle A.,
Levesque H., Lyck R., Maftahi M., Mallet L., Maurer C.T.C.,
Messenguy F., Mewes H.-W., Moestl D., Nasr F., Nicaud J.-M.,
Niedenthal R.K., Pandolfo D., Pierard A., Piravandi E., Planta R.J.,
Pohl T.M., Purnelle B., Rebischung C., Remacha M.A., Revuelta J.L.,
Rinke M., Saiz J.E., Sartorello F., Scherens B., Sen-Gupta M.,
Soler-Mira A., Urbanus J.H.M., Valle G., Van Dyck L., Verhasselt P.,
Vierendeels F., Vissers S., Voet M., Volckaert G., Wach A.,
Wambutt R., Wedler H., Zollner A., Hani J.;
"The nucleotide sequence of Saccharomyces cerevisiae chromosome XIV
and its evolutionary implications.";
Nature 387:93-98(1997).
[6]
GENOME REANNOTATION.
STRAIN=ATCC 204508 / S288c;
PubMed=24374639; DOI=10.1534/g3.113.008995;
Engel S.R., Dietrich F.S., Fisk D.G., Binkley G., Balakrishnan R.,
Costanzo M.C., Dwight S.S., Hitz B.C., Karra K., Nash R.S., Weng S.,
Wong E.D., Lloyd P., Skrzypek M.S., Miyasato S.R., Simison M.,
Cherry J.M.;
"The reference genome sequence of Saccharomyces cerevisiae: Then and
now.";
G3 (Bethesda) 4:389-398(2014).
[7]
COMPONENT OF MEDIATOR COMPLEX.
PubMed=7479899; DOI=10.1073/pnas.92.24.10864;
Li Y., Bjoerklund S., Jiang Y.W., Kim Y.-J., Lane W.S., Stillman D.J.,
Kornberg R.D.;
"Yeast global transcriptional regulators Sin4 and Rgr1 are components
of mediator complex/RNA polymerase II holoenzyme.";
Proc. Natl. Acad. Sci. U.S.A. 92:10864-10868(1995).
[8]
INTERACTION WITH HOG1.
PubMed=12743037; DOI=10.1093/emboj/cdg243;
Alepuz P.M., de Nadal E., Zapater M., Ammerer G., Posas F.;
"Osmostress-induced transcription by Hot1 depends on a Hog1-mediated
recruitment of the RNA Pol II.";
EMBO J. 22:2433-2442(2003).
[9]
SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
PubMed=14562095; DOI=10.1038/nature02026;
Huh W.-K., Falvo J.V., Gerke L.C., Carroll A.S., Howson R.W.,
Weissman J.S., O'Shea E.K.;
"Global analysis of protein localization in budding yeast.";
Nature 425:686-691(2003).
[10]
LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
PubMed=14562106; DOI=10.1038/nature02046;
Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A.,
Dephoure N., O'Shea E.K., Weissman J.S.;
"Global analysis of protein expression in yeast.";
Nature 425:737-741(2003).
[11]
NOMENCLATURE.
PubMed=15175151; DOI=10.1016/j.molcel.2004.05.011;
Bourbon H.-M., Aguilera A., Ansari A.Z., Asturias F.J., Berk A.J.,
Bjoerklund S., Blackwell T.K., Borggrefe T., Carey M., Carlson M.,
Conaway J.W., Conaway R.C., Emmons S.W., Fondell J.D., Freedman L.P.,
Fukasawa T., Gustafsson C.M., Han M., He X., Herman P.K.,
Hinnebusch A.G., Holmberg S., Holstege F.C.P., Jaehning J.A.,
Kim Y.-J., Kuras L., Leutz A., Lis J.T., Meisterernest M.,
Naeaer A.M., Nasmyth K., Parvin J.D., Ptashne M., Reinberg D.,
Ronne H., Sadowski I., Sakurai H., Sipiczki M., Sternberg P.W.,
Stillman D.J., Strich R., Struhl K., Svejstrup J.Q., Tuck S.,
Winston F., Roeder R.G., Kornberg R.D.;
"A unified nomenclature for protein subunits of mediator complexes
linking transcriptional regulators to RNA polymerase II.";
Mol. Cell 14:553-557(2004).
[12]
PHOSPHORYLATION BY KIN28.
PubMed=14749387; DOI=10.1128/MCB.24.4.1721-1735.2004;
Liu Y., Kung C., Fishburn J., Ansari A.Z., Shokat K.M., Hahn S.;
"Two cyclin-dependent kinases promote RNA polymerase II transcription
and formation of the scaffold complex.";
Mol. Cell. Biol. 24:1721-1735(2004).
[13]
STRUCTURE OF THE MEDIATOR COMPLEX.
PubMed=15477388; DOI=10.1093/nar/gkh878;
Guglielmi B., van Berkum N.L., Klapholz B., Bijma T., Boube M.,
Boschiero C., Bourbon H.-M., Holstege F.C.P., Werner M.;
"A high resolution protein interaction map of the yeast Mediator
complex.";
Nucleic Acids Res. 32:5379-5391(2004).
[14]
CHARACTERIZATION OF THE MEDIATOR COMPLEX.
PubMed=16002404; DOI=10.1074/jbc.C500150200;
Takagi Y., Chadick J.Z., Davis J.A., Asturias F.J.;
"Preponderance of free mediator in the yeast Saccharomyces
cerevisiae.";
J. Biol. Chem. 280:31200-31207(2005).
[15]
FUNCTION OF THE MEDIATOR COMPLEX.
PubMed=16076843; DOI=10.1074/jbc.M506067200;
Nair D., Kim Y., Myers L.C.;
"Mediator and TFIIH govern carboxyl-terminal domain-dependent
transcription in yeast extracts.";
J. Biol. Chem. 280:33739-33748(2005).
[16]
FUNCTION.
PubMed=16109375; DOI=10.1016/j.molcel.2005.06.033;
van de Peppel J., Kettelarij N., van Bakel H., Kockelkorn T.T.J.P.,
van Leenen D., Holstege F.C.P.;
"Mediator expression profiling epistasis reveals a signal transduction
pathway with antagonistic submodules and highly specific downstream
targets.";
Mol. Cell 19:511-522(2005).
[17]
FUNCTION OF THE MEDIATOR COMPLEX.
PubMed=16263706; DOI=10.1074/jbc.M508253200;
Takagi Y., Kornberg R.D.;
"Mediator as a general transcription factor.";
J. Biol. Chem. 281:80-89(2006).
[18]
CHARACTERIZATION OF THE MEDIATOR COMPLEX, AND INTERACTION OF THE
MEDIATOR COMPLEX WITH RNA POLYMERASE II.
PubMed=17192271; DOI=10.1074/jbc.M609484200;
Baidoobonso S.M., Guidi B.W., Myers L.C.;
"Med19(Rox3) regulates intermodule interactions in the Saccharomyces
cerevisiae mediator complex.";
J. Biol. Chem. 282:5551-5559(2007).
[19]
ELECTRON MICROSCOPY OF MEDIATOR COMPLEX IN COMPLEX WITH RNA POLYMERASE
II.
PubMed=12191485; DOI=10.1016/S1097-2765(02)00598-1;
Davis J.A., Takagi Y., Kornberg R.D., Asturias F.J.;
"Structure of the yeast RNA polymerase II holoenzyme: mediator
conformation and polymerase interaction.";
Mol. Cell 10:409-415(2002).
-!- FUNCTION: Component of the Mediator complex, a coactivator
involved in the regulated transcription of nearly all RNA
polymerase II-dependent genes. Mediator functions as a bridge to
convey information from gene-specific regulatory proteins to the
basal RNA polymerase II transcription machinery. The Mediator
complex, having a compact conformation in its free form, is
recruited to promoters by direct interactions with regulatory
proteins and serves for the assembly of a functional preinitiation
complex with RNA polymerase II and the general transcription
factors. The Mediator complex unfolds to an extended conformation
and partially surrounds RNA polymerase II, specifically
interacting with the unphosphorylated form of the C-terminal
domain (CTD) of RNA polymerase II. The Mediator complex
dissociates from the RNA polymerase II holoenzyme and stays at the
promoter when transcriptional elongation begins.
{ECO:0000269|PubMed:16076843, ECO:0000269|PubMed:16109375,
ECO:0000269|PubMed:16263706}.
-!- SUBUNIT: Component of the Mediator complex, which is composed of
at least 21 subunits that form three structurally distinct
submodules. The Mediator head module contains MED6, MED8, MED11,
SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22, the
middle module contains MED1, MED4, NUT1/MED5, MED7, CSE2/MED9,
NUT2/MED10, SRB7/MED21 and SOH1/MED31, and the tail module
contains MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16.
The head and the middle modules interact directly with RNA
polymerase II, whereas the elongated tail module interacts with
gene-specific regulatory proteins. Interacts with HOG1.
{ECO:0000269|PubMed:12743037, ECO:0000269|PubMed:17192271}.
-!- INTERACTION:
P53114:NUT1; NbExp=4; IntAct=EBI-17172, EBI-12407;
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:14562095}.
-!- PTM: Phosphorylated by KIN28. {ECO:0000269|PubMed:14749387}.
-!- MISCELLANEOUS: Present with 1720 molecules/cell in log phase SD
medium. {ECO:0000269|PubMed:14562106}.
-!- SIMILARITY: Belongs to the Mediator complex subunit 16 family.
{ECO:0000305}.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution-NoDerivs License
-----------------------------------------------------------------------
EMBL; M93050; AAA35044.1; -; Genomic_DNA.
EMBL; X64516; CAA45819.1; -; Genomic_DNA.
EMBL; D12918; BAA02302.1; -; Genomic_DNA.
EMBL; Z69381; CAA93362.1; -; Genomic_DNA.
EMBL; Z71512; CAA96140.1; -; Genomic_DNA.
EMBL; BK006947; DAA10323.1; -; Genomic_DNA.
PIR; A44484; A44484.
RefSeq; NP_014163.1; NM_001183074.1.
ProteinModelPortal; P32259; -.
BioGrid; 35603; 578.
DIP; DIP-1617N; -.
IntAct; P32259; 43.
MINT; MINT-386177; -.
STRING; 4932.YNL236W; -.
MaxQB; P32259; -.
PRIDE; P32259; -.
EnsemblFungi; YNL236W; YNL236W; YNL236W.
GeneID; 855485; -.
KEGG; sce:YNL236W; -.
EuPathDB; FungiDB:YNL236W; -.
SGD; S000005180; SIN4.
HOGENOM; HOG000113525; -.
InParanoid; P32259; -.
KO; K15160; -.
OMA; GEHKVEY; -.
OrthoDB; EOG092C0B2M; -.
BioCyc; YEAST:G3O-33235-MONOMER; -.
PRO; PR:P32259; -.
Proteomes; UP000002311; Chromosome XIV.
GO; GO:0070847; C:core mediator complex; IDA:SGD.
GO; GO:0016592; C:mediator complex; IDA:SGD.
GO; GO:0001102; F:RNA polymerase II activating transcription factor binding; IDA:SGD.
GO; GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IMP:SGD.
GO; GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IMP:SGD.
GO; GO:0070202; P:regulation of establishment of protein localization to chromosome; IMP:SGD.
GO; GO:0051123; P:RNA polymerase II transcriptional preinitiation complex assembly; IMP:SGD.
InterPro; IPR021665; Mediator_Med16.
Pfam; PF11635; Med16; 1.
1: Evidence at protein level;
Activator; Complete proteome; Nucleus; Phosphoprotein;
Reference proteome; Transcription; Transcription regulation.
CHAIN 1 974 Mediator of RNA polymerase II
transcription subunit 16.
/FTId=PRO_0000096364.
MOTIF 889 893 Nuclear localization signal.
{ECO:0000255}.
COMPBIAS 63 81 Ser/Thr-rich.
SEQUENCE 974 AA; 111297 MW; 12ECF5E4CDC05A8E CRC64;
MMLGEHLMSW SKTGIIAYSD SQSSNANICL TFLESINGIN WRFHTPQKYV LHPQLHEVQY
QESSSTLSTH STTTSVNGST TAGVGSTPNF GGNSNKSPPQ FFYNISSIHW NNWFSLPGDM
LAVCDELGNM TMLITGQRPD RATTYEKLTM VFQDNVYKIY NHVMPLKPVD KLKPMNIERK
QTRKEYNTSI LEFRWLTSSK SVIVSQFCAF DSSSNTYRSR AQQVPPYGVY HPPFIKYACL
AIRKNGQIDF WYQFSNSKDH KKITLQLLDT SNQRFKDLQW LEFARITPMN DDQCMLITTY
SKLSKNISFY KLHVNWNLNA TKPNVLNDPS LKIQFILSTT LDPTDDEGHV LKLENLHVVS
KSSIEKDPSP EILVLYNVCD TSKSLVKRYR LAPTQLSAEY LVILKPDLNI DRNNSTNQIF
QSRRYNLRRH SDIVLDKKVT LITSEMFDAF VSFYFEDGTI ESYNQNDWKL ETERLISQSQ
LGKFKNIIAS PLSAGFNYGK LPLPPSVEWM KVSPSMCGVI VKQYNKKWPQ FYAAVQKNYA
DPEKDSINAT ALAFGYVKSL HKQISAEDLT IAAKTHILRI SFLDRKRAKE FITTLLKSLY
SFFNISPDAP KEIMDKIITS RPLQKIMLLQ LELGSCFSQE NIEEMARVIL YLKNVLFAFN
GVARNFHFAI EQISNNSNQQ QNPKLFQTIF SKQDLIHSLI PVAKWFVKFI TYLTQEILIL
INDPTNKEYT LVHGIFGAKM SRTLILSILN EIKKVTQIVA KFPETSYPIL NESSTFLKLV
LSESPVDFEK FETFLVDVNN KFIALCEQQP SQEREFSLLV KAEIPPEYAK VGDFLLQYAN
NAVISHANAA AVYFADTSGL KISNSEFFNP EIFHLLQPLE EGLIIDTDKL PIKNRTSKSF
SKLLYDDVTC DKLSVSEISD GKLKRCSRCG SVTRAGNIIS SDKTIVPTSI QTKRWPTMYT
RLCICSGMLF EMDG


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