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Membrane protein (M protein) (E1 glycoprotein) (Matrix glycoprotein) (Membrane glycoprotein)

 A0A088NFW0_9ALPC        Unreviewed;       263 AA.
A0A088NFW0;
26-NOV-2014, integrated into UniProtKB/TrEMBL.
26-NOV-2014, sequence version 1.
18-JAN-2017, entry version 11.
RecName: Full=Membrane protein {ECO:0000256|RuleBase:RU363118, ECO:0000256|SAAS:SAAS00391116};
Short=M protein {ECO:0000256|RuleBase:RU363118};
AltName: Full=E1 glycoprotein {ECO:0000256|RuleBase:RU363118};
AltName: Full=Matrix glycoprotein {ECO:0000256|RuleBase:RU363118};
AltName: Full=Membrane glycoprotein {ECO:0000256|RuleBase:RU363118};
Name=M {ECO:0000256|RuleBase:RU363118, ECO:0000313|EMBL:AIN55882.1};
Feline coronavirus.
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage;
Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus.
NCBI_TaxID=12663 {ECO:0000313|EMBL:AIN55882.1};
[1] {ECO:0000313|EMBL:AIN55882.1}
NUCLEOTIDE SEQUENCE.
STRAIN=USP6/stomach/FIP+/local7/C12 {ECO:0000313|EMBL:AIN55786.1},
USP6/stomach/FIP+/local7/C16 {ECO:0000313|EMBL:AIN55870.1},
USP6/stomach/FIP+/local7/C24 {ECO:0000313|EMBL:AIN55874.1},
USP6/stomach/FIP+/local7/C29 {ECO:0000313|EMBL:AIN55882.1},
USP6/stomach/FIP+/local7/C5 {ECO:0000313|EMBL:AIN55782.1}, and
USP6/stomach/FIP+/local7/C8 {ECO:0000313|EMBL:AIN55859.1};
Hora A.S., Tonietti P.O., Taniwaki S.A., Asano K.M., Maiorka P.,
Richtzenhain L.J., Brandao P.E.;
"Feline coronavirus 3c protein: a candidate for a virulence marker?";
Submitted (MAY-2014) to the EMBL/GenBank/DDBJ databases.
-!- FUNCTION: Component of the viral envelope that plays a central
role in virus morphogenesis and assembly via its interactions with
other viral proteins. {ECO:0000256|RuleBase:RU363118}.
-!- SUBUNIT: Homomultimer. Interacts with envelope E protein in the
budding compartment of the host cell, which is located between
endoplasmic reticulum and the Golgi complex. Forms a complex with
HE and S proteins. Interacts with nucleocapsid N protein. This
interaction probably participates in RNA packaging into the virus.
{ECO:0000256|RuleBase:RU363118}.
-!- SUBCELLULAR LOCATION: Host Golgi apparatus membrane
{ECO:0000256|RuleBase:RU363118}; Multi-pass membrane protein
{ECO:0000256|RuleBase:RU363118}. Virion membrane
{ECO:0000256|RuleBase:RU363118}; Multi-pass membrane protein
{ECO:0000256|RuleBase:RU363118}.
-!- SUBCELLULAR LOCATION: Virion membrane
{ECO:0000256|SAAS:SAAS00577616}; Multi-pass membrane protein
{ECO:0000256|SAAS:SAAS00577616}.
-!- SIMILARITY: Belongs to the coronaviruses M protein family.
{ECO:0000256|RuleBase:RU363118}.
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EMBL; KJ879344; AIN55782.1; -; Genomic_RNA.
EMBL; KJ879346; AIN55786.1; -; Genomic_RNA.
EMBL; KJ879379; AIN55859.1; -; Genomic_RNA.
EMBL; KJ879381; AIN55870.1; -; Genomic_RNA.
EMBL; KJ879382; AIN55874.1; -; Genomic_RNA.
EMBL; KJ879384; AIN55882.1; -; Genomic_RNA.
GO; GO:0044178; C:host cell Golgi membrane; IEA:UniProtKB-SubCell.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0019031; C:viral envelope; IEA:UniProtKB-KW.
GO; GO:0055036; C:virion membrane; IEA:UniProtKB-SubCell.
GO; GO:0039660; F:structural constituent of virion; IEA:UniProtKB-KW.
GO; GO:0019058; P:viral life cycle; IEA:InterPro.
InterPro; IPR002574; Corona_M.
Pfam; PF01635; Corona_M; 1.
3: Inferred from homology;
Host Golgi apparatus {ECO:0000256|RuleBase:RU363118,
ECO:0000256|SAAS:SAAS00101524};
Host membrane {ECO:0000256|RuleBase:RU363118,
ECO:0000256|SAAS:SAAS00101529};
Membrane {ECO:0000256|RuleBase:RU363118,
ECO:0000256|SAAS:SAAS00101523, ECO:0000256|SAAS:SAAS00101529};
Transmembrane {ECO:0000256|RuleBase:RU363118,
ECO:0000256|SAAS:SAAS00101523};
Transmembrane helix {ECO:0000256|RuleBase:RU363118,
ECO:0000256|SAAS:SAAS00101523};
Viral envelope protein {ECO:0000256|RuleBase:RU363118,
ECO:0000256|SAAS:SAAS00101525};
Viral matrix protein {ECO:0000256|RuleBase:RU363118,
ECO:0000256|SAAS:SAAS00101522};
Virion {ECO:0000256|RuleBase:RU363118, ECO:0000256|SAAS:SAAS00101522,
ECO:0000256|SAAS:SAAS00101525}.
TRANSMEM 53 72 Helical. {ECO:0000256|RuleBase:RU363118}.
TRANSMEM 79 102 Helical. {ECO:0000256|RuleBase:RU363118}.
TRANSMEM 114 135 Helical. {ECO:0000256|RuleBase:RU363118}.
SEQUENCE 263 AA; 29849 MW; 5ABB151181EDC709 CRC64;
MKYILLIFAC IIACVCGERY CAMRDATSTS CINGTENSCQ TCFERGDLIW HLANWNFSWS
VILIVFITVL QYGRPQFSWL VYGIKMLIMW LLWPIVLALT IFNAYSEYQV SRYVMFGLSV
AGAVITFALW MMYFVRSVQL YRRTKSWWSF NPETNAILCV NALGRSYVLP LDGTPTGVTL
TLLSGNLYAE GFKMAGGLTI EHLPKYVMIA TPSRTIVYTL VGKQLKATTA TGWAYYVKSK
AGDYSTEART DNLSEHEKLL HMV


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