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Membrane protein (M protein) (E1 glycoprotein) (Matrix glycoprotein) (Membrane glycoprotein)

 VME1_IBVDE              Reviewed;         225 AA.
Q9J3N8; Q9J3N9; Q9J3P0; Q9J3P1; Q9J3P2; Q9J3P3; Q9J4B3;
11-JUL-2003, integrated into UniProtKB/Swiss-Prot.
11-JUL-2003, sequence version 2.
23-MAY-2018, entry version 68.
RecName: Full=Membrane protein {ECO:0000255|HAMAP-Rule:MF_04203};
Short=M protein {ECO:0000255|HAMAP-Rule:MF_04203};
AltName: Full=E1 glycoprotein {ECO:0000255|HAMAP-Rule:MF_04203};
AltName: Full=Matrix glycoprotein {ECO:0000255|HAMAP-Rule:MF_04203};
AltName: Full=Membrane glycoprotein {ECO:0000255|HAMAP-Rule:MF_04203};
Name=M {ECO:0000255|HAMAP-Rule:MF_04203};
Avian infectious bronchitis virus (strain DE072) (IBV).
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage;
Nidovirales; Coronaviridae; Coronavirinae; Gammacoronavirus.
NCBI_TaxID=233265;
NCBI_TaxID=9031; Gallus gallus (Chicken).
[1]
NUCLEOTIDE SEQUENCE [GENOMIC RNA].
STRAIN=Isolate AR/6386/97, Isolate GA/5381/99, Isolate GA/5658/99,
Isolate IL/2831/98, Isolate KS/5425/99, and Isolate MN/6370/97;
PubMed=11087096; DOI=10.1007/s007050070044;
Lee C.-W., Jackwood M.W.;
"Evidence of genetic diversity generated by recombination among avian
coronavirus IBV.";
Arch. Virol. 145:2135-2148(2000).
-!- FUNCTION: Component of the viral envelope that plays a central
role in virus morphogenesis and assembly via its interactions with
other viral proteins. {ECO:0000255|HAMAP-Rule:MF_04203}.
-!- SUBUNIT: Homomultimer. Interacts with envelope E protein in the
budding compartment of the host cell, which is located between
endoplasmic reticulum and the Golgi complex. Forms a complex with
HE and S proteins. Interacts with nucleocapsid N protein. This
interaction probably participates in RNA packaging into the virus.
{ECO:0000255|HAMAP-Rule:MF_04203}.
-!- SUBCELLULAR LOCATION: Virion membrane {ECO:0000255|HAMAP-
Rule:MF_04203}; Multi-pass membrane protein {ECO:0000255|HAMAP-
Rule:MF_04203}. Host Golgi apparatus membrane {ECO:0000255|HAMAP-
Rule:MF_04203}; Multi-pass membrane protein {ECO:0000255|HAMAP-
Rule:MF_04203}. Note=Largely embedded in the lipid bilayer.
{ECO:0000255|HAMAP-Rule:MF_04203}.
-!- SIMILARITY: Belongs to the gammacoronaviruses M protein family.
{ECO:0000255|HAMAP-Rule:MF_04203}.
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EMBL; AF202999; AAF69113.1; -; Genomic_RNA.
EMBL; AF206266; AAF67556.1; -; Genomic_RNA.
EMBL; AF206267; AAF67557.1; -; Genomic_RNA.
EMBL; AF206268; AAF67558.1; -; Genomic_RNA.
EMBL; AF206269; AAF67559.1; -; Genomic_RNA.
EMBL; AF206270; AAF67560.1; -; Genomic_RNA.
EMBL; AF206271; AAF67561.1; -; Genomic_RNA.
GO; GO:0044178; C:host cell Golgi membrane; IEA:UniProtKB-SubCell.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0019031; C:viral envelope; IEA:UniProtKB-KW.
GO; GO:0055036; C:virion membrane; IEA:UniProtKB-SubCell.
GO; GO:0039660; F:structural constituent of virion; IEA:UniProtKB-KW.
GO; GO:0019058; P:viral life cycle; IEA:InterPro.
HAMAP; MF_04203; GAMMA_CORONA_M; 1.
InterPro; IPR002574; Corona_M.
Pfam; PF01635; Corona_M; 1.
3: Inferred from homology;
Glycoprotein; Host Golgi apparatus; Host membrane; Membrane;
Transmembrane; Transmembrane helix; Viral envelope protein;
Viral matrix protein; Virion.
CHAIN 1 225 Membrane protein.
/FTId=PRO_0000106054.
TOPO_DOM 1 20 Virion surface. {ECO:0000255|HAMAP-
Rule:MF_04203}.
TRANSMEM 21 41 Helical. {ECO:0000255|HAMAP-
Rule:MF_04203}.
TOPO_DOM 42 51 Intravirion. {ECO:0000255|HAMAP-
Rule:MF_04203}.
TRANSMEM 52 72 Helical. {ECO:0000255|HAMAP-
Rule:MF_04203}.
TOPO_DOM 73 77 Virion surface. {ECO:0000255|HAMAP-
Rule:MF_04203}.
TRANSMEM 78 98 Helical. {ECO:0000255|HAMAP-
Rule:MF_04203}.
TOPO_DOM 99 225 Intravirion. {ECO:0000255|HAMAP-
Rule:MF_04203}.
VARIANT 2 4 SNE -> DNV (in strain: Isolate MN/6370/
97).
VARIANT 2 2 S -> A (in strain: Isolate AR/6386/97).
VARIANT 11 12 FE -> LQ (in strain: Isolate MN/6370/97).
VARIANT 15 16 VE -> IL (in strain: Isolate MN/6370/97).
VARIANT 16 16 E -> K (in strain: Isolate IL/2831/98).
VARIANT 17 17 L -> F (in strain: Isolate AR/6386/97).
VARIANT 34 34 I -> M (in strain: Isolate GA/5381/99).
VARIANT 35 35 I -> L (in strain: Isolate IL/2831/98 and
Isolate MN/6370/97).
VARIANT 44 49 SKFIYI -> NRLIYA (in strain: Isolate IL/
2831/98).
VARIANT 44 44 S -> I (in strain: Isolate AR/6386/97).
VARIANT 45 45 K -> R (in strain: Isolate MN/6370/97).
VARIANT 46 46 F -> I (in strain: Isolate GA/5381/99).
VARIANT 49 50 IL -> VM (in strain: Isolate MN/6370/97).
VARIANT 53 53 I -> V (in strain: Isolate AR/6386/97,
Isolate GA/5381/99, Isolate GA/5658/99
and Isolate KS/5425/99).
VARIANT 62 62 N -> I (in strain: Isolate KS/5425/99).
VARIANT 76 76 T -> I (in strain: Isolate GA/5381/99).
VARIANT 101 101 I -> C (in strain: Isolate IL/2831/98).
VARIANT 108 108 R -> K (in strain: Isolate IL/2831/98).
VARIANT 112 112 S -> A (in strain: Isolate MN/6370/97).
VARIANT 132 132 N -> S (in strain: Isolate MN/6370/97).
VARIANT 140 140 T -> M (in strain: Isolate AR/6386/97,
Isolate IL/2831/98, Isolate GA/5381/99,
Isolate GA/5658/99, Isolate KS/5425/99
and Isolate MN/6370/97).
VARIANT 150 150 F -> A (in strain: Isolate GA/5381/99).
VARIANT 150 150 F -> V (in strain: Isolate AR/6386/97,
Isolate GA/5658/99, Isolate IL/2831/98,
Isolate KS/5425/99 and Isolate MN/6370/
97).
VARIANT 180 180 I -> T (in strain: Isolate IL/2831/98).
SEQUENCE 225 AA; 25557 MW; 082246BAAD20D74C CRC64;
MSNETNCTLD FEQSVELFKE YNLFITAFLL FLTIILQYGY ATRSKFIYIL KMIVLWCFWP
LNIAVGVISC IYPPNTGGLV AAIILTVFAC LSFVGYWIQS IRLFKRCRSW WSFNPESNAV
GSILLTNGQQ CNFAIESVPT VLSPIIKNGF LYCEGQWLAK CEPDHLPKDI FVCTPDRRNI
YRMVQKYTGD QSGNKKRFAT FVYAKQSVDT GELESVATGG SSLYT


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