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Mitochondrial uncoupling protein 1 (AtPUMP1)

 PUMP1_ARATH             Reviewed;         306 AA.
O81845; O65623; Q56Z57;
28-NOV-2012, integrated into UniProtKB/Swiss-Prot.
01-NOV-1998, sequence version 1.
20-JUN-2018, entry version 129.
RecName: Full=Mitochondrial uncoupling protein 1;
Short=AtPUMP1;
Name=PUMP1; Synonyms=UCP1; OrderedLocusNames=At3g54110;
ORFNames=F24B22.70;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, AND INDUCTION BY COLD.
STRAIN=cv. Columbia;
PubMed=9662458; DOI=10.1016/S0014-5793(98)00634-6;
Maia I.G., Benedetti C.E., Leite A., Turcinelli S.R., Vercesi A.E.,
Arruda P.;
"AtPUMP: an Arabidopsis gene encoding a plant uncoupling mitochondrial
protein.";
FEBS Lett. 429:403-406(1998).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA].
STRAIN=cv. Columbia, and cv. Landsberg erecta;
Laloi M., Klein M., Mueller-Roeber B., Willmitzer L.;
"Arabidopsis thaliana mitochondrial uncoupling protein.";
Submitted (AUG-1997) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=cv. Columbia;
Dombrowski H.D., Cousins S.K., Harris M.A., Hanson M.R.;
"Expression of a plant mitochondrial uncoupling protein in yeast.";
Submitted (APR-1999) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=11130713; DOI=10.1038/35048706;
Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M.,
Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B.,
Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P.,
De Simone V., Choisne N., Artiguenave F., Robert C., Brottier P.,
Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F.,
Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V.,
Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S.,
Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G.,
Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B.,
Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G.,
Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J.,
Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D.,
Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
Monfort A., Argiriou A., Flores M., Liguori R., Vitale D.,
Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W.,
Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J.,
Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P.,
Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S.,
Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V.,
Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C.,
Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E.,
Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y.,
Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A.,
Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
Watanabe A., Yamada M., Yasuda M., Tabata S.;
"Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana.";
Nature 408:820-822(2000).
[5]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[7]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 123-306.
STRAIN=cv. Columbia;
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
Hayashizaki Y., Shinozaki K.;
"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
[8]
FUNCTION.
PubMed=11566183; DOI=10.1016/S0014-5793(01)02835-6;
Borecky J., Maia I.G., Costa A.D., Jezek P., Chaimovich H.,
de Andrade P.B., Vercesi A.E., Arruda P.;
"Functional reconstitution of Arabidopsis thaliana plant uncoupling
mitochondrial protein (AtPUMP1) expressed in Escherichia coli.";
FEBS Lett. 505:240-244(2001).
[9]
FUNCTION.
PubMed=13678271; DOI=10.1023/A:1024603530043;
Brandalise M., Maia I.G., Borecky J., Vercesi A.E., Arruda P.;
"Overexpression of plant uncoupling mitochondrial protein in
transgenic tobacco increases tolerance to oxidative stress.";
J. Bioenerg. Biomembr. 35:203-209(2003).
[10]
INDUCTION BY CHLORAMPHENICOL.
PubMed=16027974; DOI=10.1007/s11103-005-5514-7;
Clifton R., Lister R., Parker K.L., Sappl P.G., Elhafez D.,
Millar A.H., Day D.A., Whelan J.;
"Stress-induced co-expression of alternative respiratory chain
components in Arabidopsis thaliana.";
Plant Mol. Biol. 58:193-212(2005).
[11]
GENE FAMILY, AND NOMENCLATURE.
PubMed=16473895; DOI=10.1093/jxb/erj070;
Borecky J., Nogueira F.T., de Oliveira K.A., Maia I.G., Vercesi A.E.,
Arruda P.;
"The plant energy-dissipating mitochondrial systems: depicting the
genomic structure and the expression profiles of the gene families of
uncoupling protein and alternative oxidase in monocots and dicots.";
J. Exp. Bot. 57:849-864(2006).
[12]
FUNCTION, TISSUE SPECIFICITY, AND DISRUPTION PHENOTYPE.
PubMed=17148605; DOI=10.1073/pnas.0607751103;
Sweetlove L.J., Lytovchenko A., Morgan M., Nunes-Nesi A., Taylor N.L.,
Baxter C.J., Eickmeier I., Fernie A.R.;
"Mitochondrial uncoupling protein is required for efficient
photosynthesis.";
Proc. Natl. Acad. Sci. U.S.A. 103:19587-19592(2006).
[13]
FUNCTION, BIOPHYSICOCHEMICAL PROPERTIES, AND MUTAGENESIS OF CYS-28;
HIS-83; LYS-147; ARG-155 AND TYR-269.
PubMed=17980348; DOI=10.1016/j.bbabio.2007.09.005;
Favaro R.D., Borecky J., Colombi D., Vercesi A.E., Maia I.G.;
"Mutational analysis of Arabidopsis thaliana plant uncoupling
mitochondrial protein.";
Biochim. Biophys. Acta 1767:1412-1417(2007).
[14]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
STRAIN=cv. Landsberg erecta;
PubMed=17272265; DOI=10.1074/mcp.M600408-MCP200;
Maor R., Jones A., Nuehse T.S., Studholme D.J., Peck S.C., Shirasu K.;
"Multidimensional protein identification technology (MudPIT) analysis
of ubiquitinated proteins in plants.";
Mol. Cell. Proteomics 6:601-610(2007).
[15]
INDUCTION BY HIGH LIGHT.
PubMed=19567377; DOI=10.1093/pcp/pcp090;
Yoshida K., Noguchi K.;
"Differential gene expression profiles of the mitochondrial
respiratory components in illuminated Arabidopsis leaves.";
Plant Cell Physiol. 50:1449-1462(2009).
[16]
FUNCTION.
PubMed=19875678; DOI=10.1093/pcp/pcp144;
Hourton-Cabassa C., Matos A.R., Arrabaca J., Demandre C.,
Zachowski A., Moreau F.;
"Genetically modified Arabidopsis thaliana cells reveal the
involvement of the mitochondrial fatty acid composition in membrane
basal and uncoupling protein-mediated proton leaks.";
Plant Cell Physiol. 50:2084-2091(2009).
[17]
FUNCTION.
PubMed=21912606; DOI=10.1371/journal.pone.0023776;
Begcy K., Mariano E.D., Mattiello L., Nunes A.V., Mazzafera P.,
Maia I.G., Menossi M.;
"An Arabidopsis mitochondrial uncoupling protein confers tolerance to
drought and salt stress in transgenic tobacco plants.";
PLoS ONE 6:E23776-E23776(2011).
-!- FUNCTION: PUMPS are mitochondrial transporter proteins that create
proton leaks across the inner mitochondrial membrane, thus
uncoupling oxidative phosphorylation. This leads to a decrease in
the efficiency of oxidative phosphorylation and an increase in
heat production. Is involved in protecting plant cells against
oxidative stress damage and maintaining the redox balance of the
mitochondrial electron transport chain to facilitate
photosynthetic metabolism. May play a regulatory role during
photorespiration. {ECO:0000269|PubMed:11566183,
ECO:0000269|PubMed:13678271, ECO:0000269|PubMed:17148605,
ECO:0000269|PubMed:17980348, ECO:0000269|PubMed:19875678,
ECO:0000269|PubMed:21912606}.
-!- SUBCELLULAR LOCATION: Mitochondrion inner membrane {ECO:0000250};
Multi-pass membrane protein {ECO:0000250}.
-!- TISSUE SPECIFICITY: Widely expressed.
{ECO:0000269|PubMed:17148605, ECO:0000269|PubMed:9662458}.
-!- INDUCTION: By cold stress, high light and chloramphenicol.
{ECO:0000269|PubMed:16027974, ECO:0000269|PubMed:19567377,
ECO:0000269|PubMed:9662458}.
-!- DISRUPTION PHENOTYPE: Slight reduction of shoot mass.
{ECO:0000269|PubMed:17148605}.
-!- MISCELLANEOUS: Over-expression of Arabidopsis UCP1 in tobacco
plants increases tolerance to oxidative stress caused by exogenous
hydrogen peroxide, or by drought and salt.
{ECO:0000305|PubMed:13678271}.
-!- SIMILARITY: Belongs to the mitochondrial carrier (TC 2.A.29)
family. {ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=BAD95028.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution (CC BY 4.0) License
-----------------------------------------------------------------------
EMBL; AJ223983; CAA11757.1; -; mRNA.
EMBL; AJ001264; CAA04638.1; -; mRNA.
EMBL; Y18291; CAA77109.1; -; Genomic_DNA.
EMBL; AF146226; AAF66705.1; -; mRNA.
EMBL; AL132957; CAB70985.1; -; Genomic_DNA.
EMBL; CP002686; AEE79189.1; -; Genomic_DNA.
EMBL; AY056272; AAL07121.1; -; mRNA.
EMBL; AY091185; AAM14124.1; -; mRNA.
EMBL; AK221112; BAD95028.1; ALT_INIT; mRNA.
PIR; T47570; T47570.
PIR; T52024; T52024.
RefSeq; NP_190979.1; NM_115271.5.
UniGene; At.25009; -.
UniGene; At.68442; -.
ProteinModelPortal; O81845; -.
STRING; 3702.AT3G54110.1; -.
TCDB; 2.A.29.3.3; the mitochondrial carrier (mc) family.
PaxDb; O81845; -.
PRIDE; O81845; -.
EnsemblPlants; AT3G54110.1; AT3G54110.1; AT3G54110.
GeneID; 824578; -.
Gramene; AT3G54110.1; AT3G54110.1; AT3G54110.
KEGG; ath:AT3G54110; -.
Araport; AT3G54110; -.
TAIR; locus:2080300; AT3G54110.
eggNOG; KOG0753; Eukaryota.
eggNOG; ENOG410XRV1; LUCA.
HOGENOM; HOG000165140; -.
InParanoid; O81845; -.
KO; K15103; -.
OMA; SEHAGIG; -.
OrthoDB; EOG09360HWE; -.
PhylomeDB; O81845; -.
Reactome; R-ATH-167826; The fatty acid cycling model.
Reactome; R-ATH-167827; The proton buffering model.
PRO; PR:O81845; -.
Proteomes; UP000006548; Chromosome 3.
ExpressionAtlas; O81845; baseline and differential.
Genevisible; O81845; AT.
GO; GO:0009507; C:chloroplast; IDA:TAIR.
GO; GO:0016021; C:integral component of membrane; IBA:GO_Central.
GO; GO:0005743; C:mitochondrial inner membrane; IDA:TAIR.
GO; GO:0005739; C:mitochondrion; IDA:TAIR.
GO; GO:0009506; C:plasmodesma; IDA:TAIR.
GO; GO:0005774; C:vacuolar membrane; IDA:TAIR.
GO; GO:0015171; F:amino acid transmembrane transporter activity; IDA:TAIR.
GO; GO:0017077; F:oxidative phosphorylation uncoupler activity; IDA:TAIR.
GO; GO:0003333; P:amino acid transmembrane transport; IDA:TAIR.
GO; GO:1990542; P:mitochondrial transmembrane transport; IBA:GO_Central.
GO; GO:0006839; P:mitochondrial transport; IBA:GO_Central.
GO; GO:0009853; P:photorespiration; IMP:TAIR.
Gene3D; 1.50.40.10; -; 1.
InterPro; IPR002030; Mit_uncoupling_UCP-like.
InterPro; IPR018108; Mitochondrial_sb/sol_carrier.
InterPro; IPR023395; Mt_carrier_dom_sf.
Pfam; PF00153; Mito_carr; 3.
PRINTS; PR00784; MTUNCOUPLING.
SUPFAM; SSF103506; SSF103506; 1.
PROSITE; PS50920; SOLCAR; 3.
1: Evidence at protein level;
Complete proteome; Membrane; Mitochondrion;
Mitochondrion inner membrane; Reference proteome; Repeat;
Stress response; Transmembrane; Transmembrane helix; Transport.
CHAIN 1 306 Mitochondrial uncoupling protein 1.
/FTId=PRO_0000420255.
TRANSMEM 15 35 Helical; Name=1. {ECO:0000255}.
TRANSMEM 71 91 Helical; Name=2. {ECO:0000255}.
TRANSMEM 118 138 Helical; Name=3. {ECO:0000255}.
TRANSMEM 177 197 Helical; Name=4. {ECO:0000255}.
TRANSMEM 218 238 Helical; Name=5. {ECO:0000255}.
TRANSMEM 269 289 Helical; Name=6. {ECO:0000255}.
REPEAT 9 102 Solcar 1.
REPEAT 112 203 Solcar 2.
REPEAT 212 296 Solcar 3.
MUTAGEN 28 28 C->A: Reduces proton transport activity
3-fold. {ECO:0000269|PubMed:17980348}.
MUTAGEN 83 83 H->L: Reduces proton transport activity
3-fold. {ECO:0000269|PubMed:17980348}.
MUTAGEN 147 147 K->H: Reduces proton transport activity
3-fold. {ECO:0000269|PubMed:17980348}.
MUTAGEN 155 155 R->L: Slightly reduces proton transport
activity. {ECO:0000269|PubMed:17980348}.
MUTAGEN 269 269 Y->F: Reduces proton transport activity
3-fold. {ECO:0000269|PubMed:17980348}.
CONFLICT 178 178 G -> V (in Ref. 1; CAA11757).
{ECO:0000305}.
SEQUENCE 306 AA; 32662 MW; ACCCB46F42442142 CRC64;
MVAAGKSDLS LPKTFACSAF AACVGEVCTI PLDTAKVRLQ LQKSALAGDV TLPKYRGLLG
TVGTIAREEG LRSLWKGVVP GLHRQCLFGG LRIGMYEPVK NLYVGKDFVG DVPLSKKILA
GLTTGALGIM VANPTDLVKV RLQAEGKLAA GAPRRYSGAL NAYSTIVRQE GVRALWTGLG
PNVARNAIIN AAELASYDQV KETILKIPGF TDNVVTHILS GLGAGFFAVC IGSPVDVVKS
RMMGDSGAYK GTIDCFVKTL KSDGPMAFYK GFIPNFGRLG SWNVIMFLTL EQAKKYVREL
DASKRN


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