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Mitogen-activated protein kinase 13 (AtMPK13) (MAP kinase 13) (EC 2.7.11.24)

 MPK13_ARATH             Reviewed;         363 AA.
Q9LQQ9;
11-JUL-2006, integrated into UniProtKB/Swiss-Prot.
01-OCT-2000, sequence version 1.
18-JUL-2018, entry version 134.
RecName: Full=Mitogen-activated protein kinase 13;
Short=AtMPK13;
Short=MAP kinase 13;
EC=2.7.11.24;
Name=MPK13; OrderedLocusNames=At1g07880; ORFNames=F24B9.3;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=11130712; DOI=10.1038/35048500;
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S.,
White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y.,
Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W.,
Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K.,
Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y.,
Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L.,
Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E.,
Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B.,
Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P.,
Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A.,
Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I.,
Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D.,
Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M.,
Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M.,
Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.;
"Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana.";
Nature 408:816-820(2000).
[2]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
STRAIN=cv. Columbia;
PubMed=14993207; DOI=10.1101/gr.1515604;
Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M.,
Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G.,
Caboche M., Weissenbach J., Salanoubat M.;
"Whole genome sequence comparisons and 'full-length' cDNA sequences: a
combined approach to evaluate and improve Arabidopsis genome
annotation.";
Genome Res. 14:406-413(2004).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
STRAIN=cv. Columbia;
Kim C.J., Chen H., Cheuk R.F., Shinn P., Ecker J.R.;
"Arabidopsis ORF clones.";
Submitted (OCT-2004) to the EMBL/GenBank/DDBJ databases.
[5]
GENE FAMILY, AND NOMENCLATURE.
PubMed=12119167; DOI=10.1016/S1360-1385(02)02302-6;
MAPK group;
"Mitogen-activated protein kinase cascades in plants: a new
nomenclature.";
Trends Plant Sci. 7:301-308(2002).
[6]
ENZYME REGULATION, AND TISSUE SPECIFICITY.
PubMed=15474000; DOI=10.1016/j.febslet.2004.08.051;
Melikant B., Giuliani C., Halbmayer-Watzina S., Limmongkon A.,
Heberle-Bors E., Wilson C.;
"The Arabidopsis thaliana MEK AtMKK6 activates the MAP kinase
AtMPK13.";
FEBS Lett. 576:5-8(2004).
[7]
GENE FAMILY.
PubMed=16537113; DOI=10.1016/j.tplants.2006.02.007;
Hamel L.P., Nicole M.C., Sritubtim S., Morency M.J., Ellis M.,
Ehlting J., Beaudoin N., Barbazuk B., Klessig D., Lee J., Martin G.,
Mundy J., Ohashi Y., Scheel D., Sheen J., Xing T., Zhang S.,
Seguin A., Ellis B.E.;
"Ancient signals: comparative genomics of plant MAPK and MAPKK gene
families.";
Trends Plant Sci. 11:192-198(2006).
[8]
ENZYME REGULATION.
PubMed=21098735; DOI=10.1105/tpc.110.077164;
Kosetsu K., Matsunaga S., Nakagami H., Colcombet J., Sasabe M.,
Soyano T., Takahashi Y., Hirt H., Machida Y.;
"The MAP kinase MPK4 is required for cytokinesis in Arabidopsis
thaliana.";
Plant Cell 22:3778-3790(2010).
[9]
INTERACTION WITH MKK6.
PubMed=21575092; DOI=10.1111/j.1365-313X.2011.04642.x;
Zeng Q., Chen J.G., Ellis B.E.;
"AtMPK4 is required for male-specific meiotic cytokinesis in
Arabidopsis.";
Plant J. 67:895-906(2011).
[10]
FUNCTION, AND DISRUPTION PHENOTYPE.
PubMed=21904115; DOI=10.4161/psb.6.10.17089;
Zeng Q., Sritubtim S., Ellis B.E.;
"AtMKK6 and AtMPK13 are required for lateral root formation in
Arabidopsis.";
Plant Signal. Behav. 6:1436-1439(2011).
-!- FUNCTION: MKK6-MPK13 module positively regulates lateral root
formation. {ECO:0000269|PubMed:21904115}.
-!- CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
-!- ENZYME REGULATION: Activated by threonine and tyrosine
phosphorylation (By similarity). Activated by the MAP kinase
kinase MKK6 in vitro. {ECO:0000250, ECO:0000269|PubMed:15474000,
ECO:0000269|PubMed:21098735}.
-!- SUBUNIT: Interacts with MKK6. {ECO:0000269|PubMed:21575092}.
-!- INTERACTION:
Q9S7U9:MKK2; NbExp=2; IntAct=EBI-2358762, EBI-994350;
Q9FJV0:MKK6; NbExp=2; IntAct=EBI-2358762, EBI-1238868;
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=1;
IsoId=Q9LQQ9-1; Sequence=Displayed;
Name=2;
IsoId=Q9LQQ9-2; Sequence=VSP_036334, VSP_036335;
Note=May be due to an intron retention. No experimental
confirmation available. Ref.3 (BX818168) sequence is in conflict
in position: 243:L->P. {ECO:0000305};
-!- TISSUE SPECIFICITY: Expressed in roots, stems and flower buds.
{ECO:0000269|PubMed:15474000}.
-!- DOMAIN: The TXY motif contains the threonine and tyrosine residues
whose phosphorylation activates the MAP kinases.
-!- PTM: Dually phosphorylated on Thr-191 and Tyr-193, which activates
the enzyme. {ECO:0000250}.
-!- DISRUPTION PHENOTYPE: RNAi MPK13 displays fewer lateral roots.
{ECO:0000269|PubMed:21904115}.
-!- SIMILARITY: Belongs to the protein kinase superfamily. CMGC
Ser/Thr protein kinase family. MAP kinase subfamily.
{ECO:0000305}.
-----------------------------------------------------------------------
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
Distributed under the Creative Commons Attribution (CC BY 4.0) License
-----------------------------------------------------------------------
EMBL; AC007583; AAF75067.1; -; Genomic_DNA.
EMBL; CP002684; AEE28197.1; -; Genomic_DNA.
EMBL; CP002684; AEE28198.1; -; Genomic_DNA.
EMBL; BX818168; -; NOT_ANNOTATED_CDS; mRNA.
EMBL; BT015822; AAU94385.1; -; mRNA.
PIR; C86214; C86214.
RefSeq; NP_001030990.1; NM_001035913.2. [Q9LQQ9-1]
RefSeq; NP_172266.2; NM_100662.4. [Q9LQQ9-2]
UniGene; At.49865; -.
ProteinModelPortal; Q9LQQ9; -.
SMR; Q9LQQ9; -.
BioGrid; 22544; 2.
IntAct; Q9LQQ9; 2.
MINT; Q9LQQ9; -.
STRING; 3702.AT1G07880.2; -.
iPTMnet; Q9LQQ9; -.
PaxDb; Q9LQQ9; -.
PRIDE; Q9LQQ9; -.
EnsemblPlants; AT1G07880.1; AT1G07880.1; AT1G07880. [Q9LQQ9-2]
EnsemblPlants; AT1G07880.2; AT1G07880.2; AT1G07880. [Q9LQQ9-1]
GeneID; 837303; -.
Gramene; AT1G07880.1; AT1G07880.1; AT1G07880. [Q9LQQ9-2]
Gramene; AT1G07880.2; AT1G07880.2; AT1G07880. [Q9LQQ9-1]
KEGG; ath:AT1G07880; -.
Araport; AT1G07880; -.
TAIR; locus:2026484; AT1G07880.
eggNOG; KOG0660; Eukaryota.
eggNOG; ENOG410XNY0; LUCA.
HOGENOM; HOG000233024; -.
InParanoid; Q9LQQ9; -.
KO; K04371; -.
OMA; PKQPFSE; -.
OrthoDB; EOG09360BXQ; -.
PhylomeDB; Q9LQQ9; -.
Reactome; R-ATH-198753; ERK/MAPK targets.
Reactome; R-ATH-198765; Signalling to ERK5.
Reactome; R-ATH-202670; ERKs are inactivated.
Reactome; R-ATH-2559582; Senescence-Associated Secretory Phenotype (SASP).
Reactome; R-ATH-881907; Gastrin-CREB signalling pathway via PKC and MAPK.
PRO; PR:Q9LQQ9; -.
Proteomes; UP000006548; Chromosome 1.
ExpressionAtlas; Q9LQQ9; baseline and differential.
Genevisible; Q9LQQ9; AT.
GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
GO; GO:0005634; C:nucleus; IBA:GO_Central.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0004707; F:MAP kinase activity; ISS:TAIR.
GO; GO:0010311; P:lateral root formation; IMP:UniProtKB.
GO; GO:0010468; P:regulation of gene expression; IBA:GO_Central.
InterPro; IPR011009; Kinase-like_dom_sf.
InterPro; IPR003527; MAP_kinase_CS.
InterPro; IPR000719; Prot_kinase_dom.
InterPro; IPR017441; Protein_kinase_ATP_BS.
InterPro; IPR008271; Ser/Thr_kinase_AS.
Pfam; PF00069; Pkinase; 1.
SMART; SM00220; S_TKc; 1.
SUPFAM; SSF56112; SSF56112; 1.
PROSITE; PS01351; MAPK; 1.
PROSITE; PS00107; PROTEIN_KINASE_ATP; 1.
PROSITE; PS50011; PROTEIN_KINASE_DOM; 1.
PROSITE; PS00108; PROTEIN_KINASE_ST; 1.
1: Evidence at protein level;
Alternative splicing; ATP-binding; Complete proteome; Kinase;
Nucleotide-binding; Phosphoprotein; Reference proteome;
Serine/threonine-protein kinase; Transferase.
CHAIN 1 363 Mitogen-activated protein kinase 13.
/FTId=PRO_0000245813.
DOMAIN 33 319 Protein kinase. {ECO:0000255|PROSITE-
ProRule:PRU00159}.
NP_BIND 39 47 ATP. {ECO:0000255|PROSITE-
ProRule:PRU00159}.
MOTIF 191 193 TXY.
ACT_SITE 159 159 Proton acceptor. {ECO:0000255|PROSITE-
ProRule:PRU00159, ECO:0000255|PROSITE-
ProRule:PRU10027}.
BINDING 62 62 ATP. {ECO:0000255|PROSITE-
ProRule:PRU00159}.
MOD_RES 191 191 Phosphothreonine.
{ECO:0000250|UniProtKB:Q39026}.
MOD_RES 193 193 Phosphotyrosine.
{ECO:0000250|UniProtKB:Q39026}.
MOD_RES 196 196 Phosphothreonine.
{ECO:0000250|UniProtKB:Q39026}.
VAR_SEQ 249 254 LLGSPD -> VSKLKP (in isoform 2).
{ECO:0000303|PubMed:14993207}.
/FTId=VSP_036334.
VAR_SEQ 255 363 Missing (in isoform 2).
{ECO:0000303|PubMed:14993207}.
/FTId=VSP_036335.
SEQUENCE 363 AA; 42195 MW; 88472CBA140DB739 CRC64;
MEKREDGGIL TYDGRYVMYN VLGNIFELSS KYIPPIEPIG RGAYGIVCCA TNSETNEEVA
IKKIANAFDN RVDAKRTLRE IKLLSHMDHD NVIKIKDIIE LPEKERFEDV YIVYELMDTD
LHQIIRSTQT LTDDHCQYFL YQILRGLKYI HSANVLHRDL KPSNLVLNTN CDLKICDFGL
ARTSNETEIM TEYVVTRWYR APELLLNSSE YTGAIDIWSV GCIFMEILRR ETLFPGKDYV
QQLKLITELL GSPDDSDLDF LRSDNARKYV KQLPHVQKQS FREKFPNISP MALDLAEKML
VFDPSKRITV DEALKQPYLA SLHEINEEPT CPTPFSFDFE ETALDEQDIK ELVWRESLHF
KNM


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