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Multifunctional fusion protein [Includes: Endoribonuclease YbeY (EC 3.1.-.-); GTPase Era]

 D3R256_MAGIU            Unreviewed;       563 AA.
D3R256;
20-APR-2010, integrated into UniProtKB/TrEMBL.
20-APR-2010, sequence version 1.
20-JUN-2018, entry version 72.
RecName: Full=Multifunctional fusion protein {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|HAMAP-Rule:MF_00367};
Includes:
RecName: Full=Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009};
EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009};
Includes:
RecName: Full=GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367};
Name=era {ECO:0000256|HAMAP-Rule:MF_00367,
ECO:0000313|EMBL:ADC91669.1};
Synonyms=ybeY {ECO:0000256|HAMAP-Rule:MF_00009};
OrderedLocusNames=HMPREF0868_0957 {ECO:0000313|EMBL:ADC91669.1};
Mageeibacillus indolicus (strain UPII9-5) (Clostridiales genomosp.
BVAB3 (strain UPII9-5)).
Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae;
Mageeibacillus.
NCBI_TaxID=699246 {ECO:0000313|EMBL:ADC91669.1, ECO:0000313|Proteomes:UP000008234};
[1] {ECO:0000313|Proteomes:UP000008234}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=UPII9-5 {ECO:0000313|Proteomes:UP000008234};
Madupu R., Durkin A.S., Torralba M., Methe B., Sutton G.G.,
Strausberg R.L., Nelson K.E.;
"Sequence of Clostridiales genomosp. BVAB3 str. UPII9-5.";
Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases.
-!- FUNCTION: An essential GTPase that binds both GDP and GTP, with
rapid nucleotide exchange. Plays a role in 16S rRNA processing and
30S ribosomal subunit biogenesis and possibly also in cell cycle
regulation and energy metabolism. {ECO:0000256|HAMAP-
Rule:MF_00367}.
-!- FUNCTION: Single strand-specific metallo-endoribonuclease involved
in late-stage 70S ribosome quality control and in maturation of
the 3' terminus of the 16S rRNA. {ECO:0000256|HAMAP-Rule:MF_00009,
ECO:0000256|SAAS:SAAS00349030}.
-!- SUBUNIT: Monomer. {ECO:0000256|HAMAP-Rule:MF_00367,
ECO:0000256|SAAS:SAAS00337156}.
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00367}.
Cell membrane {ECO:0000256|HAMAP-Rule:MF_00367}; Peripheral
membrane protein {ECO:0000256|HAMAP-Rule:MF_00367}.
-!- SIMILARITY: Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-
like GTPase superfamily. Era GTPase family. {ECO:0000256|HAMAP-
Rule:MF_00367, ECO:0000256|RuleBase:RU003761,
ECO:0000256|SAAS:SAAS00858963}.
-!- SIMILARITY: Belongs to the endoribonuclease YbeY family.
{ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00543484}.
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EMBL; CP001850; ADC91669.1; -; Genomic_DNA.
RefSeq; WP_012993350.1; NC_013895.2.
ProteinModelPortal; D3R256; -.
STRING; 699246.HMPREF0868_0957; -.
EnsemblBacteria; ADC91669; ADC91669; HMPREF0868_0957.
KEGG; clo:HMPREF0868_0957; -.
eggNOG; ENOG4105CWT; Bacteria.
eggNOG; COG0319; LUCA.
eggNOG; COG1159; LUCA.
KO; K03595; -.
OrthoDB; POG091H02LW; -.
BioCyc; CGEN699246-HMP:G1GH3-731-MONOMER; -.
Proteomes; UP000008234; Chromosome.
GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO; GO:0004521; F:endoribonuclease activity; IEA:UniProtKB-UniRule.
GO; GO:0005525; F:GTP binding; IEA:UniProtKB-UniRule.
GO; GO:0003924; F:GTPase activity; IEA:UniProtKB-UniRule.
GO; GO:0004222; F:metalloendopeptidase activity; IEA:InterPro.
GO; GO:0070181; F:small ribosomal subunit rRNA binding; IEA:UniProtKB-UniRule.
GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-UniRule.
GO; GO:0042274; P:ribosomal small subunit biogenesis; IEA:UniProtKB-UniRule.
GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-UniRule.
CDD; cd04163; Era; 1.
Gene3D; 3.30.300.20; -; 1.
Gene3D; 3.40.390.30; -; 1.
HAMAP; MF_00009; Endoribonucl_YbeY; 1.
HAMAP; MF_00367; GTPase_Era; 1.
InterPro; IPR030388; G_ERA_dom.
InterPro; IPR005662; GTP-bd_Era.
InterPro; IPR006073; GTP_binding_domain.
InterPro; IPR015946; KH_dom-like_a/b.
InterPro; IPR004044; KH_dom_type_2.
InterPro; IPR009019; KH_sf_prok-type.
InterPro; IPR023091; MetalPrtase_cat_dom_sf_prd.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR005225; Small_GTP-bd_dom.
InterPro; IPR002036; YbeY.
InterPro; IPR020549; YbeY_CS.
Pfam; PF07650; KH_2; 1.
Pfam; PF01926; MMR_HSR1; 1.
Pfam; PF02130; UPF0054; 1.
SUPFAM; SSF52540; SSF52540; 1.
SUPFAM; SSF54814; SSF54814; 1.
TIGRFAMs; TIGR00436; era; 1.
TIGRFAMs; TIGR00231; small_GTP; 1.
TIGRFAMs; TIGR00043; TIGR00043; 1.
PROSITE; PS51713; G_ERA; 1.
PROSITE; PS50823; KH_TYPE_2; 1.
PROSITE; PS01306; UPF0054; 1.
3: Inferred from homology;
Cell membrane {ECO:0000256|HAMAP-Rule:MF_00367,
ECO:0000256|SAAS:SAAS00085715};
Complete proteome {ECO:0000313|Proteomes:UP000008234};
Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00009,
ECO:0000256|SAAS:SAAS00023230};
Endonuclease {ECO:0000256|HAMAP-Rule:MF_00009,
ECO:0000256|SAAS:SAAS00426922};
GTP-binding {ECO:0000256|HAMAP-Rule:MF_00367,
ECO:0000256|RuleBase:RU003761, ECO:0000256|SAAS:SAAS00494972};
Hydrolase {ECO:0000256|HAMAP-Rule:MF_00009,
ECO:0000256|SAAS:SAAS00426922};
Membrane {ECO:0000256|HAMAP-Rule:MF_00367,
ECO:0000256|SAAS:SAAS00085715};
Metal-binding {ECO:0000256|HAMAP-Rule:MF_00009,
ECO:0000256|SAAS:SAAS00023229};
Nuclease {ECO:0000256|HAMAP-Rule:MF_00009,
ECO:0000256|SAAS:SAAS00426922};
Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00367,
ECO:0000256|RuleBase:RU003761, ECO:0000256|SAAS:SAAS00494972};
Reference proteome {ECO:0000313|Proteomes:UP000008234};
Ribosome biogenesis {ECO:0000256|HAMAP-Rule:MF_00009,
ECO:0000256|SAAS:SAAS00023084};
RNA-binding {ECO:0000256|HAMAP-Rule:MF_00367,
ECO:0000256|SAAS:SAAS00085741};
rRNA processing {ECO:0000256|HAMAP-Rule:MF_00009,
ECO:0000256|SAAS:SAAS00426904};
rRNA-binding {ECO:0000256|HAMAP-Rule:MF_00367,
ECO:0000256|SAAS:SAAS00085741};
Zinc {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023075}.
DOMAIN 260 428 Era-type G.
{ECO:0000259|PROSITE:PS51713}.
DOMAIN 487 545 KH type-2. {ECO:0000259|PROSITE:PS50823}.
NP_BIND 268 275 GTP. {ECO:0000256|HAMAP-Rule:MF_00367}.
NP_BIND 315 319 GTP. {ECO:0000256|HAMAP-Rule:MF_00367}.
NP_BIND 378 381 GTP. {ECO:0000256|HAMAP-Rule:MF_00367}.
METAL 135 135 Zinc; catalytic. {ECO:0000256|HAMAP-
Rule:MF_00009}.
METAL 139 139 Zinc; catalytic. {ECO:0000256|HAMAP-
Rule:MF_00009}.
METAL 145 145 Zinc; catalytic. {ECO:0000256|HAMAP-
Rule:MF_00009}.
SEQUENCE 563 AA; 63319 MW; F32F673B96EEAB81 CRC64;
MLIQFQKEKC KWSTAELRQI IRYTLQAGFS YLPFSDYLSE EGLQPEFAVT FIGADAMRSL
NKEQRGIDKV TDVLSFPMLA MKKGALEEHL TAADINPENN SVFLGDIVIC LDRAEEQALE
FNHTMQREVA FLTLHSMLHL VGYDHVDNET DRLEMEEIQR ELLDNLGIKR EMTSEQIIKL
ITTNLKRLNE IENDYSEQKM WAETDQAAFD PLSGELSATD VSTNLNDGEP ILSETRSVQG
KQEQECLLKP EGEQEQQLIK SGFVSIVGRP NAGKSTLLNA ISGQHLAIVS RKAQTTRNNI
RSIYNARGVQ MIFIDTPGLH EPDTELGKYM QEAAKKALSN SDILLLMIDA CKAGPTSIEE
NCLKTAQSLR LPTVIAFNKI DLIDKSALLP VLNRYRQLAP QAEIIPISAK LSDGVGELLR
VLTGLLPTGP RYYPVDSFTD QSERQIAGEM IREQLLIYTH EEVPHGTAVI IDSFEEVAAE
NSTDPYDRSL VRIHASILCD KESHKGIIIG KGGQSLKRIG SAARHNIEKM LDCKVYLELH
VKVRPDWRNR RGILQELGYQ NKD


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