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Myogenic factor

 Q0VBX9_BOVIN            Unreviewed;       318 AA.
Q0VBX9;
05-SEP-2006, integrated into UniProtKB/TrEMBL.
05-SEP-2006, sequence version 1.
12-SEP-2018, entry version 112.
RecName: Full=Myogenic factor {ECO:0000256|RuleBase:RU003428};
Name=MYOD1 {ECO:0000313|EMBL:AAI20455.1,
ECO:0000313|Ensembl:ENSBTAP00000002868, ECO:0000313|VGNC:VGNC:31835};
Bos taurus (Bovine).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia;
Pecora; Bovidae; Bovinae; Bos.
NCBI_TaxID=9913 {ECO:0000313|EMBL:AAI20455.1};
[1] {ECO:0000313|EMBL:AAI20455.1}
NUCLEOTIDE SEQUENCE.
STRAIN=L1 Hereford {ECO:0000313|EMBL:AAI20455.1};
TISSUE=Fetal muscle {ECO:0000313|EMBL:AAI20455.1};
Moore S., Alexander L., Brownstein M., Guan L., Lobo S., Meng Y.,
Tanaguchi M., Wang Z., Yu J., Prange C., Schreiber K., Shenmen C.,
Wagner L., Bala M., Barbazuk S., Barber S., Babakaiff R., Beland J.,
Chun E., Del Rio L., Gibson S., Hanson R., Kirkpatrick R., Liu J.,
Matsuo C., Mayo M., Santos R.R., Stott J., Tsai M., Wong D.,
Siddiqui A., Holt R., Jones S.J., Marra M.A.;
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
[2] {ECO:0000313|Ensembl:ENSBTAP00000002868, ECO:0000313|Proteomes:UP000009136}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Hereford {ECO:0000313|Ensembl:ENSBTAP00000002868,
ECO:0000313|Proteomes:UP000009136};
PubMed=19393038; DOI=10.1186/gb-2009-10-4-r42;
Zimin A.V., Delcher A.L., Florea L., Kelley D.R., Schatz M.C.,
Puiu D., Hanrahan F., Pertea G., Van Tassell C.P., Sonstegard T.S.,
Marcais G., Roberts M., Subramanian P., Yorke J.A., Salzberg S.L.;
"A whole-genome assembly of the domestic cow, Bos taurus.";
Genome Biol. 10:R42.01-R42.10(2009).
[3] {ECO:0000313|Ensembl:ENSBTAP00000002868}
IDENTIFICATION.
STRAIN=Hereford {ECO:0000313|Ensembl:ENSBTAP00000002868};
Ensembl;
Submitted (MAR-2016) to UniProtKB.
-!- FUNCTION: Induces fibroblasts to differentiate into myoblasts.
Acts as a transcriptional activator that promotes transcription of
muscle-specific target genes and plays a role in muscle
differentiation. {ECO:0000256|RuleBase:RU003428}.
-!- SUBUNIT: Efficient DNA binding requires dimerization with another
bHLH protein. {ECO:0000256|RuleBase:RU003428}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|RuleBase:RU003428}.
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EMBL; DAAA02040581; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; BC120454; AAI20455.1; -; mRNA.
RefSeq; NP_001035568.2; NM_001040478.2.
UniGene; Bt.13078; -.
SMR; Q0VBX9; -.
Ensembl; ENSBTAT00000002868; ENSBTAP00000002868; ENSBTAG00000002216.
GeneID; 281938; -.
KEGG; bta:281938; -.
CTD; 4654; -.
VGNC; VGNC:31835; MYOD1.
eggNOG; KOG3960; Eukaryota.
eggNOG; ENOG4111SED; LUCA.
GeneTree; ENSGT00530000063004; -.
HOVERGEN; HBG006429; -.
KO; K09064; -.
OMA; PNPIYQV; -.
OrthoDB; EOG091G0GKD; -.
TreeFam; TF316344; -.
Reactome; R-BTA-375170; CDO in myogenesis.
Proteomes; UP000009136; Chromosome 15.
Bgee; ENSBTAG00000002216; Expressed in 1 organ(s), highest expression level in skeletal muscle tissue.
GO; GO:0005829; C:cytosol; IEA:Ensembl.
GO; GO:0030016; C:myofibril; IEA:Ensembl.
GO; GO:0016604; C:nuclear body; IEA:Ensembl.
GO; GO:0000790; C:nuclear chromatin; IEA:Ensembl.
GO; GO:0005634; C:nucleus; ISS:AgBase.
GO; GO:0005667; C:transcription factor complex; ISS:AgBase.
GO; GO:0031490; F:chromatin DNA binding; IEA:Ensembl.
GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:AgBase.
GO; GO:0070888; F:E-box binding; IEA:Ensembl.
GO; GO:0035257; F:nuclear hormone receptor binding; IEA:Ensembl.
GO; GO:1990841; F:promoter-specific chromatin binding; IEA:Ensembl.
GO; GO:0046982; F:protein heterodimerization activity; IEA:Ensembl.
GO; GO:0003713; F:transcription coactivator activity; IEA:Ensembl.
GO; GO:0008134; F:transcription factor binding; ISS:AgBase.
GO; GO:0001228; F:transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding; IEA:Ensembl.
GO; GO:0031625; F:ubiquitin protein ligase binding; IEA:Ensembl.
GO; GO:0071392; P:cellular response to estradiol stimulus; IEA:Ensembl.
GO; GO:0071385; P:cellular response to glucocorticoid stimulus; IEA:Ensembl.
GO; GO:0071453; P:cellular response to oxygen levels; IEA:Ensembl.
GO; GO:0009267; P:cellular response to starvation; IEA:Ensembl.
GO; GO:0071356; P:cellular response to tumor necrosis factor; IEA:Ensembl.
GO; GO:0043966; P:histone H3 acetylation; IEA:Ensembl.
GO; GO:0043967; P:histone H4 acetylation; IEA:Ensembl.
GO; GO:0007517; P:muscle organ development; ISS:AgBase.
GO; GO:0045445; P:myoblast differentiation; ISS:AgBase.
GO; GO:0007518; P:myoblast fate determination; ISS:AgBase.
GO; GO:0007520; P:myoblast fusion; IEA:Ensembl.
GO; GO:0014908; P:myotube differentiation involved in skeletal muscle regeneration; IEA:Ensembl.
GO; GO:2000818; P:negative regulation of myoblast proliferation; IEA:Ensembl.
GO; GO:1901741; P:positive regulation of myoblast fusion; IEA:Ensembl.
GO; GO:0043415; P:positive regulation of skeletal muscle tissue regeneration; IEA:Ensembl.
GO; GO:1905382; P:positive regulation of snRNA transcription by RNA polymerase II; IEA:Ensembl.
GO; GO:0000381; P:regulation of alternative mRNA splicing, via spliceosome; IEA:Ensembl.
GO; GO:0035914; P:skeletal muscle cell differentiation; IEA:Ensembl.
GO; GO:0043503; P:skeletal muscle fiber adaptation; IEA:Ensembl.
GO; GO:0048741; P:skeletal muscle fiber development; IEA:Ensembl.
GO; GO:0007519; P:skeletal muscle tissue development; ISS:AgBase.
GO; GO:0006351; P:transcription, DNA-templated; ISS:AgBase.
CDD; cd00083; HLH; 1.
Gene3D; 4.10.280.10; -; 1.
InterPro; IPR002546; Basic.
InterPro; IPR011598; bHLH_dom.
InterPro; IPR036638; HLH_DNA-bd_sf.
InterPro; IPR022032; Myf5.
Pfam; PF01586; Basic; 1.
Pfam; PF00010; HLH; 1.
Pfam; PF12232; Myf5; 1.
SMART; SM00520; BASIC; 1.
SMART; SM00353; HLH; 1.
SUPFAM; SSF47459; SSF47459; 1.
PROSITE; PS50888; BHLH; 1.
2: Evidence at transcript level;
Complete proteome {ECO:0000313|Proteomes:UP000009136};
DNA-binding {ECO:0000256|RuleBase:RU003428};
Nucleus {ECO:0000256|RuleBase:RU003428};
Reference proteome {ECO:0000313|Proteomes:UP000009136}.
DOMAIN 109 160 BHLH. {ECO:0000259|PROSITE:PS50888}.
SEQUENCE 318 AA; 34221 MW; AC34724D8BF852BC CRC64;
MELLSPPLRD VDLTGPDGSL CNFATADDFY DDPCFDSPDL RFFEDLDPRL VHVGALLKPE
EHSHFPAAAH PAPGAREDEH VRAPSGHHQA GRCLLWACKA CKRKTTNADR RKAATMRERR
RLSKVNEAFE TLKRCTSSNP NQRLPKVEIL RNAIRYIEGL QALLRDQDAA PPGAAAAFYA
PGPLPPGRSG EHYSGDSDAS SPRSNCSDGM MDYSGPPSGA RRRNCYDRTY YSEAPNEPRP
GKSAAVSSLD CLSSIVERIS TESPAAPALL LADAPPESSP GPQEAAGSEV ERGTPAPSPD
TAPQGLAGAN PNPIYQVL


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