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NAC domain-containing protein 40 (ANAC040) (Protein NTM1-like 8)

 NAC40_ARATH             Reviewed;         335 AA.
Q9XIN7;
07-JAN-2015, integrated into UniProtKB/Swiss-Prot.
01-NOV-1999, sequence version 1.
25-OCT-2017, entry version 101.
RecName: Full=NAC domain-containing protein 40 {ECO:0000303|PubMed:15029955};
Short=ANAC040 {ECO:0000303|PubMed:15029955};
AltName: Full=Protein NTM1-like 8 {ECO:0000303|PubMed:17158162};
Name=NTL8 {ECO:0000303|PubMed:17158162};
OrderedLocusNames=At2g27300 {ECO:0000312|Araport:AT2G27300};
ORFNames=F12K2.12 {ECO:0000312|EMBL:AAD41999.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10617197; DOI=10.1038/45471;
Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L.,
Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L.,
Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H.,
Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D.,
Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M.,
Venter J.C.;
"Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana.";
Nature 402:761-768(1999).
[2]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
Underwood B.A., Xiao Y.-L., Moskal W.A. Jr., Monaghan E.L., Wang W.,
Redman J.C., Wu H.C., Utterback T., Town C.D.;
Submitted (MAY-2005) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
Quinitio C., Chen H., Kim C.J., Shinn P., Ecker J.R.;
"Arabidopsis ORF clones.";
Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases.
[5]
GENE FAMILY, AND NOMENCLATURE.
PubMed=15029955; DOI=10.1093/dnares/10.6.239;
Ooka H., Satoh K., Doi K., Nagata T., Otomo Y., Murakami K.,
Matsubara K., Osato N., Kawai J., Carninci P., Hayashizaki Y.,
Suzuki K., Kojima K., Takahara Y., Yamamoto K., Kikuchi S.;
"Comprehensive analysis of NAC family genes in Oryza sativa and
Arabidopsis thaliana.";
DNA Res. 10:239-247(2003).
[6]
GENE FAMILY, NOMENCLATURE, TISSUE SPECIFICITY, AND INDUCTION.
PubMed=17158162; DOI=10.1093/nar/gkl1068;
Kim S.Y., Kim S.G., Kim Y.S., Seo P.J., Bae M., Yoon H.K., Park C.M.;
"Exploring membrane-associated NAC transcription factors in
Arabidopsis: implications for membrane biology in genome regulation.";
Nucleic Acids Res. 35:203-213(2007).
[7]
FUNCTION, DISRUPTION PHENOTYPE, INDUCTION BY SALT AND IMBIBITION,
SUBCELLULAR LOCATION, DEVELOPMENTAL STAGE, AND PROTEOLYTIC CLEAVAGE.
PubMed=19704545; DOI=10.4161/psb.2.6.4645;
Kim S.-G., Park C.-M.;
"Membrane-mediated salt stress signaling in flowering time control.";
Plant Signal. Behav. 2:517-518(2007).
[8]
FUNCTION, DISRUPTION PHENOTYPE, SUBCELLULAR LOCATION, INDUCTION BY
SALT, TISSUE SPECIFICITY, DEVELOPMENTAL STAGE, AND PROTEOLYTIC
CLEAVAGE.
STRAIN=cv. Columbia;
PubMed=17410378; DOI=10.1007/s00425-007-0513-3;
Kim S.-G., Kim S.-Y., Park C.-M.;
"A membrane-associated NAC transcription factor regulates salt-
responsive flowering via FLOWERING LOCUS T in Arabidopsis.";
Planta 226:647-654(2007).
[9]
FUNCTION, DISRUPTION PHENOTYPE, INDUCTION BY SALT AND GIBBERELLIC
ACID, SUBCELLULAR LOCATION, AND PROTEOLYTIC CLEAVAGE.
PubMed=18363782; DOI=10.1111/j.1365-313X.2008.03493.x;
Kim S.-G., Lee A.-K., Yoon H.-K., Park C.-M.;
"A membrane-bound NAC transcription factor NTL8 regulates gibberellic
acid-mediated salt signaling in Arabidopsis seed germination.";
Plant J. 55:77-88(2008).
[10]
FUNCTION, AND INDUCTION BY SALT AND IMBIBITION.
PubMed=19704528; DOI=10.4161/psb.3.10.6247;
Kim S.-G., Park C.-M.;
"Gibberellic acid-mediated salt signaling in seed germination.";
Plant Signal. Behav. 3:877-879(2008).
-!- FUNCTION: Transcriptional activator activated by proteolytic
cleavage through regulated intramembrane proteolysis (RIP),
probably via metalloprotease activity. Regulates gibberellic acid-
mediated salt-responsive repression of seed germination and
flowering via FT, thus delaying seed germination under high
salinity conditions. {ECO:0000269|PubMed:17410378,
ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528,
ECO:0000269|PubMed:19704545}.
-!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000269|PubMed:17410378,
ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704545}; Single-
pass membrane protein {ECO:0000255}. Nucleus {ECO:0000255|PROSITE-
ProRule:PRU00353, ECO:0000269|PubMed:17410378,
ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704545}.
Note=Localized primarily in plasma membrane as dormant form and,
upon salt stress, is processed into a transcriptionally active and
nuclear form after a proteolytic cleavage through regulated
intramembrane proteolysis (RIP). {ECO:0000269|PubMed:17410378,
ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704545}.
-!- TISSUE SPECIFICITY: Expressed in seeds, leaves, roots and
inflorescence (PubMed:17410378). Expressed in roots, rosette
leaves, cauline leaves, shoot apex, stems and flowers
(PubMed:17158162). {ECO:0000269|PubMed:17158162,
ECO:0000269|PubMed:17410378}.
-!- DEVELOPMENTAL STAGE: Accumulates in imbibed seeds
(PubMed:19704545). Detected in early stages of seed development,
especially in the basal tip of immature embryo. Particularly
expressed in vascular tissues of inflorescence stems, roots,
leaves and petioles (PubMed:17410378).
{ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:19704545}.
-!- INDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378,
PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid
(GA), but induced by the GA biosynthetic inhibitor paclabutrazol
(PAC) (PubMed:18363782). Accumulates transiently in seeds upon
imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782,
PubMed:19704528). Induced by drought stress (PubMed:17158162).
{ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378,
ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528,
ECO:0000269|PubMed:19704545}.
-!- DOMAIN: The NAC domain includes a DNA binding domain and a
dimerization domain. {ECO:0000255|PROSITE-ProRule:PRU00353}.
-!- PTM: Proteolytically cleaved, probably by metalloprotease
activity. This cleavage mediates a translocation from the plasma
membrane to the nucleus. {ECO:0000269|PubMed:17410378,
ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704545}.
-!- DISRUPTION PHENOTYPE: In ntl8-1, no discernible phenotypic changes
except slight differences in lateral root growth and flowering
time, as well as reduced lateral root growth rate. Insensitive to
high salt. {ECO:0000269|PubMed:17410378,
ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704545}.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution-NoDerivs License
-----------------------------------------------------------------------
EMBL; AC006233; AAD41999.1; -; Genomic_DNA.
EMBL; CP002685; AEC07970.1; -; Genomic_DNA.
EMBL; DQ056544; AAY78696.1; -; mRNA.
EMBL; BT028934; ABI49481.1; -; mRNA.
PIR; C84671; C84671.
RefSeq; NP_180298.1; NM_128289.2.
UniGene; At.52935; -.
ProteinModelPortal; Q9XIN7; -.
IntAct; Q9XIN7; 5.
STRING; 3702.AT2G27300.1; -.
PaxDb; Q9XIN7; -.
EnsemblPlants; AT2G27300.1; AT2G27300.1; AT2G27300.
GeneID; 817273; -.
Gramene; AT2G27300.1; AT2G27300.1; AT2G27300.
KEGG; ath:AT2G27300; -.
Araport; AT2G27300; -.
TAIR; locus:2039600; AT2G27300.
eggNOG; ENOG410IK7S; Eukaryota.
eggNOG; ENOG4111423; LUCA.
HOGENOM; HOG000151180; -.
InParanoid; Q9XIN7; -.
OMA; PTHQETI; -.
OrthoDB; EOG09360DDF; -.
PhylomeDB; Q9XIN7; -.
PRO; PR:Q9XIN7; -.
Proteomes; UP000006548; Chromosome 2.
Genevisible; Q9XIN7; AT.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0005634; C:nucleus; IDA:UniProtKB.
GO; GO:0005886; C:plasma membrane; IDA:UniProtKB.
GO; GO:0043565; F:sequence-specific DNA binding; IPI:TAIR.
GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR.
GO; GO:0071472; P:cellular response to salt stress; IMP:UniProtKB.
GO; GO:0009908; P:flower development; IEA:UniProtKB-KW.
GO; GO:0009740; P:gibberellic acid mediated signaling pathway; IEA:UniProtKB-KW.
GO; GO:0033619; P:membrane protein proteolysis; IDA:UniProtKB.
GO; GO:0009938; P:negative regulation of gibberellic acid mediated signaling pathway; IMP:UniProtKB.
GO; GO:0048573; P:photoperiodism, flowering; IMP:UniProtKB.
GO; GO:0009739; P:response to gibberellin; IDA:UniProtKB.
GO; GO:0009651; P:response to salt stress; IMP:TAIR.
GO; GO:0009845; P:seed germination; IDA:UniProtKB.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
InterPro; IPR003441; NAC-dom.
InterPro; IPR036093; NAC_dom_sf.
Pfam; PF02365; NAM; 1.
SUPFAM; SSF101941; SSF101941; 1.
PROSITE; PS51005; NAC; 1.
1: Evidence at protein level;
Activator; Cell membrane; Complete proteome; DNA-binding; Flowering;
Gibberellin signaling pathway; Membrane; Nucleus; Reference proteome;
Stress response; Transcription; Transcription regulation;
Transmembrane; Transmembrane helix.
CHAIN 1 335 NAC domain-containing protein 40.
/FTId=PRO_0000431527.
TRANSMEM 313 333 Helical. {ECO:0000255}.
DOMAIN 14 156 NAC. {ECO:0000255|PROSITE-
ProRule:PRU00353}.
DNA_BIND 112 162 {ECO:0000255|PROSITE-ProRule:PRU00353}.
SEQUENCE 335 AA; 38184 MW; B0B34D87FB18134C CRC64;
MSKEAEMSIA VSALFPGFRF SPTDVELISY YLRRKIDGDE NSVAVIAEVE IYKFEPWDLP
EESKLKSENE WFYFCARGRK YPHGSQSRRA TQLGYWKATG KERSVKSGNQ VVGTKRTLVF
HIGRAPRGER TEWIMHEYCI HGAPQDALVV CRLRKNADFR ASSTQKMEDG VVQDDGYVGQ
RGGLEKEDKS YYESEHQIPN GDIAESSNVV EDQADTDDDC YAEILNDDII KLDEEALKAS
QAFRPTNPTH QETISSESSS KRSKCGIKKE STETMNCYAL FRIKNVAGTD SSWRFPNPFK
IKKDDSQRLM KNVLATTVFL AILFSFFWTV LIARN


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