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NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 (B22 subunit of eukaryotic mitochondrial complex I) (Complex I-B22) (AtCIB22) (CI-B22) (NADH-ubiquinone oxidoreductase B22 subunit)

 NDUB9_ARATH             Reviewed;         117 AA.
Q945M1; O65692; Q56Z32; Q8LDS9;
27-JUL-2011, integrated into UniProtKB/Swiss-Prot.
01-DEC-2001, sequence version 1.
25-APR-2018, entry version 87.
RecName: Full=NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9;
AltName: Full=B22 subunit of eukaryotic mitochondrial complex I;
AltName: Full=Complex I-B22;
Short=AtCIB22;
Short=CI-B22;
AltName: Full=NADH-ubiquinone oxidoreductase B22 subunit;
Name=CIB22; OrderedLocusNames=At4g34700; ORFNames=T4L20_280;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10617198; DOI=10.1038/47134;
Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G.,
Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N.,
Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M.,
Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M.,
Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T.,
Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I.,
Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P.,
Langham S.-A., McCullagh B., Bilham L., Robben J.,
van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F.,
Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E.,
Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W.,
Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P.,
Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H.,
De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R.,
van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S.,
Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R.,
Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S.,
Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H.,
Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S.,
Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A.,
Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R.,
Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S.,
Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E.,
Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A.,
Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T.,
Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C.,
Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S.,
Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K.,
Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L.,
Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J.,
Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J.,
Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D.,
Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D.,
Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C.,
Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C.,
Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R.,
Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S.,
Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A.,
Chen E., Marra M.A., Martienssen R., McCombie W.R.;
"Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana.";
Nature 402:769-777(1999).
[2]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
Feldmann K.A.;
"Full-length cDNA from Arabidopsis thaliana.";
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 58-117.
STRAIN=cv. Columbia;
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
Hayashizaki Y., Shinozaki K.;
"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
[6]
FUNCTION, DISRUPTION PHENOTYPE, TISSUE SPECIFICITY, AND SUBCELLULAR
LOCATION.
PubMed=21035093; DOI=10.1016/S1673-8527(09)60085-0;
Han L., Qin G., Kang D., Chen Z., Gu H., Qu L.J.;
"A nuclear-encoded mitochondrial gene AtCIB22 is essential for plant
development in Arabidopsis.";
J. Genet. Genomics 37:667-683(2010).
[7]
ACETYLATION [LARGE SCALE ANALYSIS] AT SER-2, CLEAVAGE OF INITIATOR
METHIONINE [LARGE SCALE ANALYSIS], AND IDENTIFICATION BY MASS
SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=22223895; DOI=10.1074/mcp.M111.015131;
Bienvenut W.V., Sumpton D., Martinez A., Lilla S., Espagne C.,
Meinnel T., Giglione C.;
"Comparative large-scale characterisation of plant vs. mammal proteins
reveals similar and idiosyncratic N-alpha acetylation features.";
Mol. Cell. Proteomics 11:M111.015131-M111.015131(2012).
-!- FUNCTION: Accessory subunit of the mitochondrial membrane
respiratory chain NADH dehydrogenase (Complex I), that is believed
to be not involved in catalysis. Complex I functions in the
transfer of electrons from NADH to the respiratory chain. The
immediate electron acceptor for the enzyme is believed to be
ubiquinone (By similarity). Is required for correct plant growth
and development. {ECO:0000250, ECO:0000269|PubMed:21035093}.
-!- SUBUNIT: Complex I is composed of at least 49 different subunits.
-!- SUBCELLULAR LOCATION: Mitochondrion inner membrane
{ECO:0000269|PubMed:21035093}; Peripheral membrane protein
{ECO:0000269|PubMed:21035093}; Matrix side
{ECO:0000269|PubMed:21035093}.
-!- TISSUE SPECIFICITY: Expressed in roots, stems, flowers, rosette
leaves, cauline leaves and siliques, with the highest expression
in the stems. {ECO:0000269|PubMed:21035093}.
-!- DISRUPTION PHENOTYPE: Shorter roots, smaller plants and delayed
flowering. {ECO:0000269|PubMed:21035093}.
-!- SIMILARITY: Belongs to the complex I LYR family. {ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=CAA18849.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
Sequence=CAB80187.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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EMBL; AL023094; CAA18849.1; ALT_SEQ; Genomic_DNA.
EMBL; AL161586; CAB80187.1; ALT_SEQ; Genomic_DNA.
EMBL; CP002687; AEE86412.1; -; Genomic_DNA.
EMBL; AF412069; AAL06522.1; -; mRNA.
EMBL; BT001011; AAN46765.1; -; mRNA.
EMBL; AY085825; AAM63041.1; -; mRNA.
EMBL; AK221137; BAD95113.1; -; mRNA.
PIR; T05290; T05290.
RefSeq; NP_567970.1; NM_119636.4.
UniGene; At.23017; -.
SMR; Q945M1; -.
BioGrid; 14904; 3.
IntAct; Q945M1; 3.
STRING; 3702.AT4G34700.1; -.
TCDB; 3.D.1.6.3; the h(+) or na(+)-translocating nadh dehydrogenase (ndh) family.
iPTMnet; Q945M1; -.
SwissPalm; Q945M1; -.
PaxDb; Q945M1; -.
PRIDE; Q945M1; -.
EnsemblPlants; AT4G34700.1; AT4G34700.1; AT4G34700.
GeneID; 829622; -.
Gramene; AT4G34700.1; AT4G34700.1; AT4G34700.
KEGG; ath:AT4G34700; -.
Araport; AT4G34700; -.
TAIR; locus:2139619; AT4G34700.
eggNOG; KOG3466; Eukaryota.
eggNOG; ENOG4111PES; LUCA.
HOGENOM; HOG000193319; -.
InParanoid; Q945M1; -.
KO; K03965; -.
OMA; KWERNAP; -.
OrthoDB; EOG09360V57; -.
PhylomeDB; Q945M1; -.
PRO; PR:Q945M1; -.
Proteomes; UP000006548; Chromosome 4.
ExpressionAtlas; Q945M1; baseline and differential.
Genevisible; Q945M1; AT.
GO; GO:0031966; C:mitochondrial membrane; IDA:TAIR.
GO; GO:0005747; C:mitochondrial respiratory chain complex I; IBA:GO_Central.
GO; GO:0005739; C:mitochondrion; IDA:TAIR.
GO; GO:0045271; C:respiratory chain complex I; IDA:TAIR.
GO; GO:0005774; C:vacuolar membrane; IDA:TAIR.
GO; GO:0005975; P:carbohydrate metabolic process; IMP:TAIR.
GO; GO:0006120; P:mitochondrial electron transport, NADH to ubiquinone; IEA:InterPro.
GO; GO:0009853; P:photorespiration; TAS:TAIR.
InterPro; IPR008011; Complex1_LYR.
InterPro; IPR033034; NDUFB9.
PANTHER; PTHR12868; PTHR12868; 1.
Pfam; PF05347; Complex1_LYR; 1.
1: Evidence at protein level;
Acetylation; Complete proteome; Electron transport; Membrane;
Mitochondrion; Mitochondrion inner membrane; Reference proteome;
Respiratory chain; Transport.
INIT_MET 1 1 Removed. {ECO:0000244|PubMed:22223895}.
CHAIN 2 117 NADH dehydrogenase [ubiquinone] 1 beta
subcomplex subunit 9.
/FTId=PRO_0000410999.
MOD_RES 2 2 N-acetylserine.
{ECO:0000244|PubMed:22223895}.
CONFLICT 54 54 V -> A (in Ref. 4; AAM63041).
{ECO:0000305}.
SEQUENCE 117 AA; 13616 MW; 37DE865F28C54DC3 CRC64;
MSGVSTAAYF ARRAAQKERV RILYRRALKD TLNWAVHRHI FYRDASDLRE KFNVNQDVED
VDRIDKLIAH GEAEYNKWRH PDPYIVPWAP GGSKFCRNPT PPAGIEIVYN YGLEDNP


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