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Neurochondrin homolog (dNeurochondrin)

 NCDN_DROME              Reviewed;         723 AA.
Q9VI25; Q8MSV0;
18-MAR-2008, integrated into UniProtKB/Swiss-Prot.
01-MAY-2000, sequence version 1.
10-OCT-2018, entry version 108.
RecName: Full=Neurochondrin homolog;
AltName: Full=dNeurochondrin;
Name=Neurochondrin; ORFNames=CG2330;
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley;
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G.,
Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A.,
Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X.,
Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[2]
GENOME REANNOTATION.
STRAIN=Berkeley;
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D.N.J., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 431-723.
STRAIN=Berkeley; TISSUE=Embryo;
Stapleton M., Brokstein P., Hong L., Agbayani A., Carlson J.W.,
Champe M., Chavez C., Dorsett V., Dresnek D., Farfan D., Frise E.,
George R.A., Gonzalez M., Guarin H., Kronmiller B., Li P.W., Liao G.,
Miranda A., Mungall C.J., Nunoo J., Pacleb J.M., Paragas V., Park S.,
Patel S., Phouanenavong S., Wan K.H., Yu C., Lewis S.E., Rubin G.M.,
Celniker S.E.;
Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases.
[4]
IDENTIFICATION, PROBABLE FUNCTION, AND TISSUE SPECIFICITY.
PubMed=16415344; DOI=10.1074/jbc.M512468200;
Montana E.S., Littleton J.T.;
"Expression profiling of a hypercontraction-induced myopathy in
Drosophila suggests a compensatory cytoskeletal remodeling response.";
J. Biol. Chem. 281:8100-8109(2006).
-!- FUNCTION: Strongly up-regulated in Mhc mutants suggesting a role
in muscle function.
-!- TISSUE SPECIFICITY: Expressed in both somatic and visceral
musculature. {ECO:0000269|PubMed:16415344}.
-!- SIMILARITY: Belongs to the neurochondrin family. {ECO:0000305}.
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EMBL; AE014297; AAF54119.1; -; Genomic_DNA.
EMBL; AY118571; AAM49940.2; -; mRNA.
RefSeq; NP_649658.1; NM_141401.2.
ProteinModelPortal; Q9VI25; -.
BioGrid; 65997; 3.
STRING; 7227.FBpp0081226; -.
PaxDb; Q9VI25; -.
PRIDE; Q9VI25; -.
EnsemblMetazoa; FBtr0081729; FBpp0081226; FBgn0037447.
GeneID; 40796; -.
KEGG; dme:Dmel_CG2330; -.
UCSC; CG2330-RA; d. melanogaster.
CTD; 40796; -.
FlyBase; FBgn0037447; Neurochondrin.
eggNOG; KOG2611; Eukaryota.
eggNOG; ENOG410XRYT; LUCA.
GeneTree; ENSGT00390000013601; -.
HOGENOM; HOG000216823; -.
InParanoid; Q9VI25; -.
OMA; YIQATIR; -.
OrthoDB; EOG091G04JK; -.
PhylomeDB; Q9VI25; -.
ChiTaRS; Neurochondrin; fly.
GenomeRNAi; 40796; -.
PRO; PR:Q9VI25; -.
Proteomes; UP000000803; Chromosome 3R.
Bgee; FBgn0037447; Expressed in 27 organ(s), highest expression level in crop (Drosophila).
ExpressionAtlas; Q9VI25; baseline and differential.
Genevisible; Q9VI25; DM.
GO; GO:0030425; C:dendrite; ISS:UniProtKB.
GO; GO:0043025; C:neuronal cell body; ISS:UniProtKB.
GO; GO:0003012; P:muscle system process; IGI:FlyBase.
Gene3D; 1.25.10.10; -; 1.
InterPro; IPR011989; ARM-like.
InterPro; IPR016024; ARM-type_fold.
InterPro; IPR008709; Neurochondrin.
PANTHER; PTHR13109; PTHR13109; 1.
Pfam; PF05536; Neurochondrin; 1.
SUPFAM; SSF48371; SSF48371; 3.
2: Evidence at transcript level;
Complete proteome; Reference proteome.
CHAIN 1 723 Neurochondrin homolog.
/FTId=PRO_0000324622.
SEQUENCE 723 AA; 81629 MW; 66BDE6EDD95E1462 CRC64;
MTDVPEPVRK CASLLKGTKS DTEKFAALFM VTKLVKGKDC NAAGKKLLFE AIGFPFLKKL
LVSKDLPNDC PPLVYKSVAL SILTCFCQEE ELATHKDIID AIPTLLEIVE QADDEDYEDN
LIVVSEAYSC LKSIASHEPG QQALLATGAI PKMSQIYSAQ SFQTDEALHL IVLLVKQFGV
VSWPEDPTAF HALIQRIALD METDDTERKY ELCRILADIL ITCRREIVIN SLEGQIWPES
LFKGCGDILK AKIGPKQRDP ALHLIATTLH VLGIQWAFMD EQKTFFLQLL QLGAIEVRMQ
MDEKKLETTF KQAELLTCCF SILEHCIEYM ATDQLDLEPK EKQTTYTALK GAFNQVLAVL
TRVSQDKIRE SSNPKDKKFV FAIVKVLSAW LAQETTAMRP AIYKLLPFML KVANESFQEL
KTWRAGTREG EPPIDVLRIM LPALCHFAVE EEARRVLFTH KQDEVLLESL EFYFSIAHWK
RPPIPRAERL KRMNEPDPVP TPEQQAEMKV ARSAIVALCN ILMNFTVLEP KKAEDGPTFA
NLLKFVVENL PELKDTPDNL VIHGNLAVLG LLLLKQQSKK VKQNDFSICR YIQATIRFLW
DAYNIDESND PTALVVSIAY KGYWSDLSEL WFLGMQTMCG VLPLVPWLSE FALESGWAEG
IVKTLKKVKI GTLPANVKSA YEDFLSQLVD VNGDVQAVLK KADALRVCRN HRMMDLGKKL
FGD


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