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Nonstructural polyprotein

 A0A076V6D5_9VIRU        Unreviewed;      2474 AA.
A0A076V6D5;
29-OCT-2014, integrated into UniProtKB/TrEMBL.
29-OCT-2014, sequence version 1.
27-SEP-2017, entry version 18.
SubName: Full=Nonstructural polyprotein {ECO:0000313|EMBL:AIK21918.1};
synthetic recombinant Chikungunya virus strain LS3-GFP.
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage;
Togaviridae; Alphavirus; unclassified Alphavirus.
NCBI_TaxID=1529938 {ECO:0000313|EMBL:AIK21918.1, ECO:0000313|Proteomes:UP000163570};
[1] {ECO:0000313|EMBL:AIK21918.1, ECO:0000313|Proteomes:UP000163570}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=LS3-GFP {ECO:0000313|EMBL:AIK21918.1};
PubMed=23936484;
Scholte F.E., Tas A., Martina B.E., Cordioli P., Narayanan K.,
Makino S., Snijder E.J., van Hemert M.J.;
"Characterization of synthetic Chikungunya viruses based on the
consensus sequence of recent E1-226V isolates.";
PLoS ONE 8:E71047-E71047(2013).
-!- CATALYTIC ACTIVITY: ATP + H(2)O = ADP + phosphate.
{ECO:0000256|SAAS:SAAS00580605}.
-!- CATALYTIC ACTIVITY: Nucleoside triphosphate + RNA(n) = diphosphate
+ RNA(n+1). {ECO:0000256|SAAS:SAAS00383097}.
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EMBL; KC149887; AIK21918.1; -; Other_RNA.
Proteomes; UP000163570; Genome.
GO; GO:0033644; C:host cell membrane; IEA:UniProtKB-KW.
GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0008234; F:cysteine-type peptidase activity; IEA:UniProtKB-KW.
GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
GO; GO:0008174; F:mRNA methyltransferase activity; IEA:UniProtKB-UniRule.
GO; GO:0003723; F:RNA binding; IEA:InterPro.
GO; GO:0003968; F:RNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-KW.
GO; GO:0006396; P:RNA processing; IEA:InterPro.
GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
GO; GO:0039694; P:viral RNA genome replication; IEA:InterPro.
InterPro; IPR027351; (+)RNA_virus_helicase_core_dom.
InterPro; IPR002588; Alphavirus-like_MT_dom.
InterPro; IPR002620; Alphavirus_nsp2pro.
InterPro; IPR002589; Macro_dom.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR007094; RNA-dir_pol_PSvirus.
InterPro; IPR001788; Tymovirus_RNA-dep_RNA_pol.
Pfam; PF01661; Macro; 1.
Pfam; PF01707; Peptidase_C9; 1.
Pfam; PF00978; RdRP_2; 1.
Pfam; PF01443; Viral_helicase1; 1.
Pfam; PF01660; Vmethyltransf; 1.
SMART; SM00506; A1pp; 1.
SUPFAM; SSF52540; SSF52540; 1.
PROSITE; PS51743; ALPHAVIRUS_MT; 1.
PROSITE; PS51154; MACRO; 1.
PROSITE; PS51520; NSP2PRO; 1.
PROSITE; PS51657; PSRV_HELICASE; 1.
PROSITE; PS50507; RDRP_SSRNA_POS; 1.
4: Predicted;
ATP-binding {ECO:0000256|SAAS:SAAS00581494};
Coiled coil {ECO:0000256|SAM:Coils};
Complete proteome {ECO:0000313|Proteomes:UP000163570};
Helicase {ECO:0000256|SAAS:SAAS00581494};
Host membrane {ECO:0000256|SAAS:SAAS00539966};
Hydrolase {ECO:0000256|SAAS:SAAS00539752,
ECO:0000256|SAAS:SAAS00581494};
Membrane {ECO:0000256|SAAS:SAAS00539966};
Nucleotide-binding {ECO:0000256|SAAS:SAAS00581494};
Nucleotidyltransferase {ECO:0000256|SAAS:SAAS00510600};
Protease {ECO:0000256|SAAS:SAAS00539752};
RNA-directed RNA polymerase {ECO:0000256|SAAS:SAAS00510600};
Thiol protease {ECO:0000256|SAAS:SAAS00539752};
Transferase {ECO:0000256|SAAS:SAAS00510600};
Viral RNA replication {ECO:0000256|SAAS:SAAS00664279}.
DOMAIN 28 259 Alphavirus-like MT.
{ECO:0000259|PROSITE:PS51743}.
DOMAIN 690 991 (+)RNA virus helicase C-terminal.
{ECO:0000259|PROSITE:PS51657}.
DOMAIN 1004 1327 Peptidase C9.
{ECO:0000259|PROSITE:PS51520}.
DOMAIN 1324 1493 Macro. {ECO:0000259|PROSITE:PS51154}.
DOMAIN 2228 2343 RdRp catalytic.
{ECO:0000259|PROSITE:PS50507}.
COILED 487 508 {ECO:0000256|SAM:Coils}.
ACT_SITE 1013 1013 For cysteine protease nsP2 activity.
{ECO:0000256|PROSITE-ProRule:PRU00853}.
ACT_SITE 1083 1083 For cysteine protease nsP2 activity.
{ECO:0000256|PROSITE-ProRule:PRU00853}.
SEQUENCE 2474 AA; 275805 MW; 3E82DFA2C90B42E3 CRC64;
MDPVYVDIDA DSAFLKALQR AYPMFEVEPR QVTPNDHANA RAFSHLAIKL IEQEIDPDST
ILDIGSAPAR RMMSDRKYHC VCPMRSAEDP ERLANYARKL ASAAGKVLDR NISGKIGDLQ
AVMAVPDKET PTFCLHTDVS CRQRADVAIY QDVYAVHAPT SLYHQAIKGV RVAYWVGFDT
TPFMYNAMAG AYPSYSTNWA DEQVLKAKNI GLCSTDLTEG RRGKLSIMRG KKLKPCDRVL
FSVGSTLYPE SRKLLKSWHL PSVFHLKGKL SFTCRCDTVV SCEGYVVKRI TMSPGLYGKT
TGYAVTHHAD GFLMCKTTDT VDGERVSFSV CTYVPATICD QMTGILATEV TPEDAQKLLV
GLNQRIVVNG RTQRNMNTMK NYLLPVVAQA FSKWAKECRK DMEDEKLLGV RERTLTCCCL
WAFKKQKTHT VYKRPDTQSI QKVQAEFDSF VVPSLWSSGL SIPLRTRIKW LLSKVPKTDL
IPYSGDAREA RDAEKEAEEE REAELTREAL PPLQAAQEDV QVEIDVEQLE DRAGAGIIET
PRGAIKVTAQ PTDHVVGEYL VLSPQTVLRS QKLSLIHALA EQVKTCTHNG RAGRYAVEAY
DGRVLVPSGY AISPEDFQSL SESATMVYNE REFVNRKLHH IAMHGPALNT DEESYELVRA
ERTEHEYVYD VDQRRCCKKE EAAGLVLVGD LTNPPYHEFA YEGLKIRPAC PYKIAVIGVF
GVPGSGKSAI IKNLVTRQDL VTSGKKENCQ EITTDVMRQR GLEISARTVD SLLLNGCNRP
VDVLYVDEAF ACHSGTLLAL IALVRPRQKV VLCGDPKQCG FFNMMQMKVN YNHNICTQVY
HKSISRRCTL PVTAIVSSLH YEGKMRTTNE YNKPIVVDTT GSTKPDPGDL VLTCFRGWVK
QLQIDYRGYE VMTAAASQGL TRKGVYAVRQ KVNENPLYAS TSEHVNVLLT RTEGKLVWKT
LSGDPWIKTL QNPPKGNFKA TIKEWEVEHA SIMAGICSHQ MTFDTFQNKA NVCWAKSLVP
ILETAGIKLN DRQWSQIIQA FKEDKAYSPE VALNEICTRM YGVDLDSGLF SKPLVSVYYA
DNHWDNRPGG KMFGFNPEAA SILERKYPFT KGKWNINKQI CVTTRRIEDF NPTTNIIPAN
RRLPHSLVAE HRPVKGERME WLVNKINGHH VLLVSGYNLA LPTKRVTWVA PLGVRGADYT
YNLELGLPAT LGRYDLVVIN IHTPFRIHHY QQCVDHAMKL QMLGGDSLRL LKPGGSLLIR
AYGYADRTSE RVICVLGRKF RSSRALKPPC VTSNTEMFFL FSNFDNGRRN FTTHVMNNQL
NAAFVGQVTR AGCAPSYRVK RMDIAKNDEE CVVNAANPRG LPGDGVCKAV YKKWPESFKN
SATPVGTAKT VMCGTYPVIH AVGPNFSNYS ESEGDRELAA AYREVAKEVT RLGVNSVAIP
LLSTGVYSGG KDRLTQSLNH LFTAMDSTDA DVVIYCRDKE WEKKISEAIQ MRTQVELLDE
HISIDCDIVR VHPDSSLAGR KGYSTTEGAL YSYLEGTRFH QTAVDMAEIH TMWPKQTEAN
EQVCLYALGE SIESIRQKCP VDDADASSPP KTVPCLCRYA MTPERVTRLR MNHVTSIIVC
SSFPLPKYKI EGVQKVKCSK VMLFDHNVPS RVSPREYRSS QESAQEASTI TSLTHSQFDL
SVDGEILPVP SDLDADAPAL EPALDDGATH TLPSTTGNLA AVSDWVMSTV PVAPPRRRRG
RNLTVTCDER EGNITPMASV RFFRAELCPV VQETAETRDT AMSLQAPPST ATEPNHPPIS
FGASSETFPI TFGDFNEGEI ESLSSELLTF GDFLPGEVDD LTDSDWSTCS DTDDELXLDR
AGGYIFSSDT GPGHLQQKSV RQSVLPVNTL EEVHEEKCYP PKLDEAKEQL LLKKLQESAS
MANRSRYQSR KVENMKAAII QRLKRGCRLY LMSETPKVPT YRTTYPAPVY SPPINVRLSN
PESAVAACNE FLARNYPTVS SYQITDEYDA YLDMVDGSES CLDRATFNPS KLRSYPKQHA
YHAPSIRSAV PSPFQNTLQN VLAAATKRNC NVTQMRELPT LDSAVFNVEC FKKFACNQEY
WEEFAASPIR ITTENLATYV TKLKGPKAAA LFAKTHNLLP LQEVPMDRFT VDMKRDVKVT
PGTKHTEERP KVQVIQAAEP LATAYLCGIH RELVRRLNAV LLPNVHTLFD MSAEDFDAII
AAHFKPGDTV LETDIASFDK SQDDSLALTA LMLLEDLGVD HSLLDLIEAA FGEISSCHLP
TGTRFKFGAM MKSGMFLTLF VNTLLNITIA SRVLEDRLTK SACAAFIGDD NIIHGVVSDE
LMAARCATWM NMEVKIIDAV VSLKAPYFCG GFILHDTVTG TACRVADPLK RLFKLGKPLA
AGDEQDEDRR RALADEVIRW QRTGLIDELE KAVYSRYEVQ GISVVVMSMA TFASSRSNFE
KLRGPVITLY GGPK


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