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Nuclear export protein (NEP) (Non-structural protein 2)

 Q10UL0_9INFA            Unreviewed;       121 AA.
Q10UL0;
22-AUG-2006, integrated into UniProtKB/TrEMBL.
22-AUG-2006, sequence version 1.
05-JUL-2017, entry version 56.
RecName: Full=Nuclear export protein {ECO:0000256|RuleBase:RU362104, ECO:0000256|SAAS:SAAS00405215};
Short=NEP {ECO:0000256|RuleBase:RU362104};
AltName: Full=Non-structural protein 2 {ECO:0000256|RuleBase:RU362104};
Name=NS2 {ECO:0000313|EMBL:ABG47890.1};
Synonyms=NS {ECO:0000256|RuleBase:RU362104};
Influenza A virus (A/New York/685/1995(H3N2)).
Viruses; ssRNA viruses; ssRNA negative-strand viruses;
Orthomyxoviridae; Influenzavirus A.
NCBI_TaxID=383026 {ECO:0000313|EMBL:ABG47890.1};
[1] {ECO:0000313|EMBL:ABG47890.1}
NUCLEOTIDE SEQUENCE.
STRAIN=A/New York/685/1995 {ECO:0000313|EMBL:ABG47890.1};
The NIAID Influenza Genome Sequencing Consortium;
Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases.
[2] {ECO:0000313|EMBL:ABG47890.1}
NUCLEOTIDE SEQUENCE.
STRAIN=A/New York/685/1995 {ECO:0000313|EMBL:ABG47890.1};
Ghedin E., Miller N., Zaborsky J., Feldblyum T., Subbu V., Shumway M.,
Sitz J., Kosack D., Koo H., Salzberg S.L., Griesemer S., StGeorge K.,
Bennett R., Taylor J., Bao Y., Bolotov P., Dernovoy D., Lipman D.J.,
Tatusova T.;
"The NIAID Influenza Genome Sequencing Project.";
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
-!- FUNCTION: Mediates the nuclear export of encapsidated genomic RNAs
(ribonucleoproteins, RNPs). Acts as an adapter between viral RNPs
complexes and the nuclear export machinery of the cell. Possesses
no intrinsic RNA-binding activity, but includes a C-terminal M1-
binding domain. This domain is believed to allow recognition of
RNPs bound to the protein M1. Since protein M1 is not available in
large quantities before late stages of infection, such an indirect
recognition mechanism probably ensures that genomic RNPs are not
exported from the host nucleus until sufficient quantities of
viral mRNA and progeny genomic RNA have been synthesized.
Furthermore, the RNPs enter the host cytoplasm only when
associated with the M1 protein that is necessary to guide them to
the plasma membrane. May down-regulate viral RNA synthesis when
overproduced. {ECO:0000256|RuleBase:RU362104,
ECO:0000256|SAAS:SAAS00844881}.
-!- SUBUNIT: Binds M1 protein. May interact with host nucleoporin
RAB/HRB and exportin XPO1/CRM1. {ECO:0000256|RuleBase:RU362104}.
-!- SUBUNIT: Interacts with protein M1. May interact with host
nucleoporin RAB/HRB and exportin XPO1/CRM1.
{ECO:0000256|SAAS:SAAS00844863}.
-!- SUBCELLULAR LOCATION: Host nucleus
{ECO:0000256|SAAS:SAAS00589355}.
-!- SUBCELLULAR LOCATION: Virion {ECO:0000256|RuleBase:RU362104}. Host
nucleus {ECO:0000256|RuleBase:RU362104}.
-!- SIMILARITY: Belongs to the influenza viruses NEP family.
{ECO:0000256|RuleBase:RU362104, ECO:0000256|SAAS:SAAS00844884}.
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EMBL; CY011836; ABG47890.1; -; Genomic_RNA.
ProteinModelPortal; Q10UL0; -.
GO; GO:0042025; C:host cell nucleus; IEA:UniProtKB-SubCell.
GO; GO:0019012; C:virion; IEA:UniProtKB-SubCell.
GO; GO:0006405; P:RNA export from nucleus; IEA:InterPro.
GO; GO:0016032; P:viral process; IEA:UniProtKB-KW.
InterPro; IPR000968; Flu_NS2.
Pfam; PF00601; Flu_NS2; 1.
3: Inferred from homology;
Host nucleus {ECO:0000256|RuleBase:RU362104,
ECO:0000256|SAAS:SAAS00483614};
Host-virus interaction {ECO:0000256|RuleBase:RU362104,
ECO:0000256|SAAS:SAAS00483594};
Transport {ECO:0000256|RuleBase:RU362104,
ECO:0000256|SAAS:SAAS00483575};
Virion {ECO:0000256|RuleBase:RU362104, ECO:0000256|SAAS:SAAS00483607}.
SEQUENCE 121 AA; 14365 MW; F7412214F7814338 CRC64;
MDSNTVSSFQ DILLRMSKMQ LGSSSEDLNG MITQFESLKI YRDSLGEAVM RMGDLHLLQN
RNGKWREQLG QKFEEIRWLI EEVRHRLKTT ENSFEQITFM QALQLLFEVE QEIRTFSFQL
I


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