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Nuclear hormone receptor FTZ-F1 beta (Nuclear hormone receptor HR39) (dHR39) (Nuclear receptor subfamily 5 group B member 1)

 FTF1B_DROME             Reviewed;         808 AA.
Q05192; A4V0Z2; Q0E8N5; Q8INT8; Q9VID8;
01-OCT-1996, integrated into UniProtKB/Swiss-Prot.
25-OCT-2004, sequence version 3.
23-MAY-2018, entry version 172.
RecName: Full=Nuclear hormone receptor FTZ-F1 beta;
AltName: Full=Nuclear hormone receptor HR39;
Short=dHR39;
AltName: Full=Nuclear receptor subfamily 5 group B member 1;
Name=Hr39; Synonyms=FTZ-F1-beta, FTZF1-beta, NR5-beta-1, NR5B1;
ORFNames=CG8676;
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227;
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM A), FUNCTION, TISSUE SPECIFICITY,
AND DEVELOPMENTAL STAGE.
STRAIN=Canton-S; TISSUE=Head;
PubMed=8382937; DOI=10.1016/0925-4773(93)90084-B;
Ohno C.K., Petkovich M.;
"FTZ-F1 beta, a novel member of the Drosophila nuclear receptor
family.";
Mech. Dev. 40:13-24(1993).
[2]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS A AND C), FUNCTION, TISSUE
SPECIFICITY, AND DEVELOPMENTAL STAGE.
TISSUE=Embryo;
PubMed=8479913; DOI=10.1093/nar/21.7.1619;
Ayer S., Walker N., Mosammaparast M., Nelson J.P., Shilo B.-Z.,
Benyajati C.;
"Activation and repression of Drosophila alcohol dehydrogenase distal
transcription by two steroid hormone receptor superfamily members
binding to a common response element.";
Nucleic Acids Res. 21:1619-1627(1993).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley;
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G.,
Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A.,
Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X.,
Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[4]
GENOME REANNOTATION, AND ALTERNATIVE SPLICING.
STRAIN=Berkeley;
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D.N.J., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM A).
STRAIN=Berkeley; TISSUE=Embryo;
PubMed=12537569; DOI=10.1186/gb-2002-3-12-research0080;
Stapleton M., Carlson J.W., Brokstein P., Yu C., Champe M.,
George R.A., Guarin H., Kronmiller B., Pacleb J.M., Park S., Wan K.H.,
Rubin G.M., Celniker S.E.;
"A Drosophila full-length cDNA resource.";
Genome Biol. 3:RESEARCH0080.1-RESEARCH0080.8(2002).
[6]
FUNCTION, AND SUBUNIT.
PubMed=8164672; DOI=10.1128/MCB.14.5.3166;
Ohno C.K., Ueda H., Petkovich M.;
"The Drosophila nuclear receptors FTZ-F1 alpha and FTZ-F1 beta compete
as monomers for binding to a site in the fushi tarazu gene.";
Mol. Cell. Biol. 14:3166-3175(1994).
[7]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-90; SER-98; SER-100;
SER-106; SER-127 AND SER-276, AND IDENTIFICATION BY MASS SPECTROMETRY.
TISSUE=Embryo;
PubMed=18327897; DOI=10.1021/pr700696a;
Zhai B., Villen J., Beausoleil S.A., Mintseris J., Gygi S.P.;
"Phosphoproteome analysis of Drosophila melanogaster embryos.";
J. Proteome Res. 7:1675-1682(2008).
-!- FUNCTION: Acts as a cofactor to fushi tarazu (ftz). Facilitates
the binding of ftz to DNA. Binds the sequence element 5'-
YCYYGGYCR-3' in the zebra element of ftz. Probably also functions
as a receptor for a yet unknown ligand.
{ECO:0000269|PubMed:8164672, ECO:0000269|PubMed:8382937,
ECO:0000269|PubMed:8479913}.
-!- SUBUNIT: Monomer; forms a complex with ftz. {ECO:0000250}.
-!- INTERACTION:
Q86BY9:rig; NbExp=2; IntAct=EBI-75048, EBI-422757;
O96757:stumps; NbExp=3; IntAct=EBI-75048, EBI-74922;
-!- SUBCELLULAR LOCATION: Nucleus.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=A; Synonyms=B;
IsoId=Q05192-1; Sequence=Displayed;
Name=C; Synonyms=DHR39-short;
IsoId=Q05192-2; Sequence=VSP_003718, VSP_003719;
-!- TISSUE SPECIFICITY: Expressed throughout the blastodermal layer in
early embryos. At later stages, strong expression is observed in
the brain, ventral cord and hindgut. {ECO:0000269|PubMed:8382937,
ECO:0000269|PubMed:8479913}.
-!- DEVELOPMENTAL STAGE: Expressed at all stages.
{ECO:0000269|PubMed:8382937, ECO:0000269|PubMed:8479913}.
-!- SIMILARITY: Belongs to the nuclear hormone receptor family. NR5
subfamily. {ECO:0000305}.
-----------------------------------------------------------------------
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EMBL; L06423; AAA28543.1; -; mRNA.
EMBL; L07551; AAA28464.1; -; mRNA.
EMBL; L07549; AAA28462.1; -; mRNA.
EMBL; L07550; AAA28463.1; -; mRNA.
EMBL; AE014134; AAN11107.1; -; Genomic_DNA.
EMBL; AE014134; AAN11108.1; -; Genomic_DNA.
EMBL; AE014134; AAN11109.1; -; Genomic_DNA.
EMBL; AY069676; AAL39821.1; -; mRNA.
PIR; S33708; S33708.
PIR; S33709; S33709.
RefSeq; NP_476932.1; NM_057584.5. [Q05192-1]
RefSeq; NP_476933.1; NM_057585.3. [Q05192-2]
RefSeq; NP_599123.1; NM_134296.3. [Q05192-1]
RefSeq; NP_724322.1; NM_165364.2. [Q05192-1]
UniGene; Dm.4837; -.
ProteinModelPortal; Q05192; -.
BioGrid; 61349; 19.
IntAct; Q05192; 16.
STRING; 7227.FBpp0081008; -.
iPTMnet; Q05192; -.
PaxDb; Q05192; -.
PRIDE; Q05192; -.
EnsemblMetazoa; FBtr0081478; FBpp0081007; FBgn0261239. [Q05192-2]
EnsemblMetazoa; FBtr0081479; FBpp0081008; FBgn0261239. [Q05192-1]
EnsemblMetazoa; FBtr0081480; FBpp0081009; FBgn0261239. [Q05192-1]
EnsemblMetazoa; FBtr0081481; FBpp0081010; FBgn0261239. [Q05192-1]
GeneID; 35398; -.
KEGG; dme:Dmel_CG8676; -.
UCSC; CG8676-RD; d. melanogaster.
CTD; 35398; -.
FlyBase; FBgn0261239; Hr39.
eggNOG; KOG3575; Eukaryota.
eggNOG; ENOG410XRZC; LUCA.
GeneTree; ENSGT00870000136388; -.
InParanoid; Q05192; -.
KO; K08705; -.
OMA; AVKVREC; -.
OrthoDB; EOG091G069P; -.
PhylomeDB; Q05192; -.
Reactome; R-DME-383280; Nuclear Receptor transcription pathway.
ChiTaRS; Hr39; fly.
GenomeRNAi; 35398; -.
PRO; PR:Q05192; -.
Proteomes; UP000000803; Chromosome 2L.
Bgee; FBgn0261239; -.
Genevisible; Q05192; DM.
GO; GO:0005634; C:nucleus; IDA:FlyBase.
GO; GO:0090575; C:RNA polymerase II transcription factor complex; IBA:GO_Central.
GO; GO:0003682; F:chromatin binding; IBA:GO_Central.
GO; GO:0004879; F:nuclear receptor activity; IDA:FlyBase.
GO; GO:0000978; F:RNA polymerase II proximal promoter sequence-specific DNA binding; IDA:FlyBase.
GO; GO:0003707; F:steroid hormone receptor activity; IEA:InterPro.
GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
GO; GO:0016321; P:female meiosis chromosome segregation; HMP:FlyBase.
GO; GO:0009755; P:hormone-mediated signaling pathway; IBA:GO_Central.
GO; GO:0045433; P:male courtship behavior, veined wing generated song production; IMP:FlyBase.
GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IBA:GO_Central.
GO; GO:0060968; P:regulation of gene silencing; IMP:FlyBase.
GO; GO:0006355; P:regulation of transcription, DNA-templated; IDA:FlyBase.
GO; GO:0035211; P:spermathecum morphogenesis; IMP:FlyBase.
GO; GO:0009888; P:tissue development; IBA:GO_Central.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
Gene3D; 3.30.50.10; -; 1.
InterPro; IPR035500; NHR_like_dom_sf.
InterPro; IPR016355; NR5_fam.
InterPro; IPR000536; Nucl_hrmn_rcpt_lig-bd.
InterPro; IPR001723; Nuclear_hrmn_rcpt.
InterPro; IPR001628; Znf_hrmn_rcpt.
InterPro; IPR013088; Znf_NHR/GATA.
PANTHER; PTHR24086; PTHR24086; 1.
Pfam; PF00104; Hormone_recep; 1.
Pfam; PF00105; zf-C4; 1.
PRINTS; PR00398; STRDHORMONER.
PRINTS; PR00047; STROIDFINGER.
SMART; SM00430; HOLI; 1.
SMART; SM00399; ZnF_C4; 1.
SUPFAM; SSF48508; SSF48508; 2.
PROSITE; PS51843; NR_LBD; 1.
PROSITE; PS00031; NUCLEAR_REC_DBD_1; 1.
PROSITE; PS51030; NUCLEAR_REC_DBD_2; 1.
1: Evidence at protein level;
Activator; Alternative splicing; Complete proteome; DNA-binding;
Metal-binding; Nucleus; Phosphoprotein; Receptor; Reference proteome;
Transcription; Transcription regulation; Zinc; Zinc-finger.
CHAIN 1 808 Nuclear hormone receptor FTZ-F1 beta.
/FTId=PRO_0000053740.
DOMAIN 580 808 NR LBD. {ECO:0000255|PROSITE-
ProRule:PRU01189}.
DNA_BIND 373 448 Nuclear receptor. {ECO:0000255|PROSITE-
ProRule:PRU00407}.
ZN_FING 376 396 NR C4-type. {ECO:0000255|PROSITE-
ProRule:PRU00407}.
ZN_FING 412 436 NR C4-type. {ECO:0000255|PROSITE-
ProRule:PRU00407}.
COMPBIAS 36 39 Poly-Thr.
COMPBIAS 230 299 Ser-rich.
COMPBIAS 478 488 Poly-Ala.
COMPBIAS 572 589 Ser-rich.
MOD_RES 90 90 Phosphoserine.
{ECO:0000269|PubMed:18327897}.
MOD_RES 98 98 Phosphoserine.
{ECO:0000269|PubMed:18327897}.
MOD_RES 100 100 Phosphoserine.
{ECO:0000269|PubMed:18327897}.
MOD_RES 106 106 Phosphoserine.
{ECO:0000269|PubMed:18327897}.
MOD_RES 127 127 Phosphoserine.
{ECO:0000269|PubMed:18327897}.
MOD_RES 276 276 Phosphoserine.
{ECO:0000269|PubMed:18327897}.
VAR_SEQ 696 701 TCIERM -> VSLCEL (in isoform C).
{ECO:0000303|PubMed:8479913}.
/FTId=VSP_003718.
VAR_SEQ 702 808 Missing (in isoform C).
{ECO:0000303|PubMed:8479913}.
/FTId=VSP_003719.
CONFLICT 185 185 E -> G (in Ref. 1; AAA28543 and 2;
AAA28462/AAA28463/AAA28464).
{ECO:0000305}.
CONFLICT 203 203 V -> L (in Ref. 1; AAA28543).
{ECO:0000305}.
CONFLICT 389 389 G -> F (in Ref. 2; AAA28462/AAA28463/
AAA28464). {ECO:0000305}.
CONFLICT 763 763 P -> Q (in Ref. 2; AAA28462/AAA28464).
{ECO:0000305}.
SEQUENCE 808 AA; 87314 MW; 02390BC2D4B35A48 CRC64;
MPNMSSIKAE QQSGPLGGSS GYQVPVNMCT TTVANTTTTL GSSAGGATGS RHNVSVTNIK
CELDELPSPN GNMVPVIANY VHGSLRIPLS GHSNHRESDS EEELASIENL KVRRRTAADK
NGPRPMSWEG ELSDTEVNGG EELMEMEPTI KSEVVPAVAP PQPVCALQPI KTELENIAGE
MQIQEKCYPQ SNTQHHAATK LKVAPTQSDP INLKFEPPLG DNSPLLAARS KSSSGGHLPL
PTNPSPDSAI HSVYTHSSPS QSPLTSRHAP YTPSLSRNNS DASHSSCYSY SSEFSPTHSP
IQARHAPPAG TLYGNHHGIY RQMKVEASST VPSSGQEAQN LSMDSASSNL DTVGLGSSHP
ASPAGISRQQ LINSPCPICG DKISGFHYGI FSCESCKGFF KRTVQNRKNY VCVRGGPCQV
SISTRKKCPA CRFEKCLQKG MKLEAIREDR TRGGRSTYQC SYTLPNSMLS PLLSPDQAAA
AAAAAAVASQ QQPHQRLHQL NGFGGVPIPC STSLPASPSL AGTSVKSEEM AETGKQSLRT
GSVPPLLQEI MDVEHLWQYT DAELARINQP LSAFASGSSS SSSSSGTSSG AHAQLTNPLL
ASAGLSSNGE NANPDLIAHL CNVADHRLYK IVKWCKSLPL FKNISIDDQI CLLINSWCEL
LLFSCCFRSI DTPGEIKMSQ GRKITLSQAK SNGLQTCIER MLNLTDHLRR LRVDRYEYVA
MKVIVLLQSD TTELQEAVKV RECQEKALQS LQAYTLAHYP DTPSKFGELL LRIPDLQRTC
QLGKEMLTIK TRDGADFNLL MELLRGEH


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