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Nuclear pore complex protein NUP96 (AtNUP96) (Nucleoporin 96) (Nucleoporin PRECOCIOUS) (Nucleoporin PRECOZ) (Protein MODIFIER OF SNC1 3) (Protein SUPPRESSOR OF AUXIN RESISTANCE 3)

 NUP96_ARATH             Reviewed;        1046 AA.
Q8LLD0; Q38941; Q8LLD1;
19-MAR-2014, integrated into UniProtKB/Swiss-Prot.
01-OCT-2002, sequence version 1.
25-OCT-2017, entry version 112.
RecName: Full=Nuclear pore complex protein NUP96 {ECO:0000303|PubMed:21189294};
Short=AtNUP96;
AltName: Full=Nucleoporin 96 {ECO:0000303|PubMed:21189294};
AltName: Full=Nucleoporin PRECOCIOUS;
AltName: Full=Nucleoporin PRECOZ;
AltName: Full=Protein MODIFIER OF SNC1 3 {ECO:0000303|PubMed:15772285};
AltName: Full=Protein SUPPRESSOR OF AUXIN RESISTANCE 3 {ECO:0000303|PubMed:16751346};
Name=NUP96 {ECO:0000303|PubMed:21189294};
Synonyms=MOS3 {ECO:0000303|PubMed:15772285}, PRE,
SAR3 {ECO:0000303|PubMed:16751346};
OrderedLocusNames=At1g80680 {ECO:0000312|Araport:AT1G80680};
ORFNames=F23A5.3 {ECO:0000312|EMBL:AAF14656.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, SUBCELLULAR LOCATION, AND
DISRUPTION PHENOTYPE.
STRAIN=cv. Columbia;
PubMed=15772285; DOI=10.1105/tpc.104.029926;
Zhang Y., Li X.;
"A putative nucleoporin 96 is required for both basal defense and
constitutive resistance responses mediated by suppressor of npr1-
1,constitutive 1.";
Plant Cell 17:1306-1316(2005).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA].
STRAIN=cv. Columbia, and cv. Landsberg erecta;
Alonso Blanco C., Martinez-Zapater J.M.;
"A mutation in PRECOZ (PRE) causes early flowering and supresses late
flowering mutant phenotypes in Arabidopsis.";
Submitted (AUG-2001) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=cv. Columbia;
Goodman H.M., Gallant P., Keifer-Higgins S., Rubenfield M.,
Church G.M.;
"A 37.5 Kb sequence from Arabidopsis thaliana chromosome I.";
Submitted (APR-1996) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=11130712; DOI=10.1038/35048500;
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S.,
White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y.,
Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W.,
Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K.,
Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y.,
Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L.,
Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E.,
Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B.,
Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P.,
Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A.,
Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I.,
Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D.,
Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M.,
Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M.,
Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.;
"Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana.";
Nature 408:816-820(2000).
[5]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
[6]
FUNCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY, AND DISRUPTION
PHENOTYPE.
PubMed=16751346; DOI=10.1105/tpc.106.041566;
Parry G., Ward S., Cernac A., Dharmasiri S., Estelle M.;
"The Arabidopsis SUPPRESSOR OF AUXIN RESISTANCE proteins are
nucleoporins with an important role in hormone signaling and
development.";
Plant Cell 18:1590-1603(2006).
[7]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-523, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
STRAIN=cv. Columbia;
PubMed=19245862; DOI=10.1016/j.jprot.2009.02.004;
Jones A.M.E., MacLean D., Studholme D.J., Serna-Sanz A.,
Andreasson E., Rathjen J.P., Peck S.C.;
"Phosphoproteomic analysis of nuclei-enriched fractions from
Arabidopsis thaliana.";
J. Proteomics 72:439-451(2009).
[8]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-523, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=19376835; DOI=10.1104/pp.109.138677;
Reiland S., Messerli G., Baerenfaller K., Gerrits B., Endler A.,
Grossmann J., Gruissem W., Baginsky S.;
"Large-scale Arabidopsis phosphoproteome profiling reveals novel
chloroplast kinase substrates and phosphorylation networks.";
Plant Physiol. 150:889-903(2009).
[9]
IDENTIFICATION IN THE NUCLEAR PORE COMPLEX, AND NOMENCLATURE.
PubMed=21189294; DOI=10.1105/tpc.110.079947;
Tamura K., Fukao Y., Iwamoto M., Haraguchi T., Hara-Nishimura I.;
"Identification and characterization of nuclear pore complex
components in Arabidopsis thaliana.";
Plant Cell 22:4084-4097(2010).
[10]
FUNCTION, SUBCELLULAR LOCATION, AND DISRUPTION PHENOTYPE.
PubMed=21203492; DOI=10.1371/journal.pgen.1001250;
Germain H., Qu N., Cheng Y.T., Lee E., Huang Y., Dong O.X., Gannon P.,
Huang S., Ding P., Li Y., Sack F., Zhang Y., Li X.;
"MOS11: a new component in the mRNA export pathway.";
PLoS Genet. 6:E1001250-E1001250(2010).
[11]
FUNCTION, AND DISRUPTION PHENOTYPE.
PubMed=22288649; DOI=10.1111/j.1365-313X.2012.04928.x;
Wiermer M., Cheng Y.T., Imkampe J., Li M., Wang D., Lipka V., Li X.;
"Putative members of the Arabidopsis Nup107-160 nuclear pore sub-
complex contribute to pathogen defense.";
Plant J. 70:796-808(2012).
-!- FUNCTION: Contributes to the transfer of mature mRNA from the
nucleus to the cytosol. Required for both R gene-mediated and
basal disease resistance. RNA export seems to play a critical role
in stress responses and regulation of plant growth and
development. {ECO:0000269|PubMed:15772285,
ECO:0000269|PubMed:16751346, ECO:0000269|PubMed:21203492,
ECO:0000269|PubMed:22288649}.
-!- SUBUNIT: Part of the nuclear pore complex (NPC). The NPC has an
eight-fold symmetrical structure comprising a central transport
channel and two rings, the cytoplasmic and nuclear rings, to which
eight filaments are attached. The cytoplasmic filaments have loose
ends, while the nuclear filaments are joined in a distal ring,
forming a nuclear basket. NPCs are highly dynamic in configuration
and composition, and can be devided in 3 subcomplexes, the NUP62
subcomplex, the NUP107-160 subcomplex and the NUP93 subcomplex,
containing approximately 30 different nucleoporin proteins.
{ECO:0000305|PubMed:21189294}.
-!- SUBCELLULAR LOCATION: Nucleus membrane
{ECO:0000269|PubMed:16751346}; Peripheral membrane protein
{ECO:0000269|PubMed:16751346}; Nucleoplasmic side
{ECO:0000269|PubMed:16751346}. Nucleus, nuclear pore complex
{ECO:0000269|PubMed:15772285, ECO:0000269|PubMed:21203492}.
-!- TISSUE SPECIFICITY: Expressed in roots, leaves, stems, flowers and
siliques. {ECO:0000269|PubMed:16751346}.
-!- DISRUPTION PHENOTYPE: Pleiotropic phenotype with diverse growth
defects and early flowering. {ECO:0000269|PubMed:15772285,
ECO:0000269|PubMed:16751346, ECO:0000269|PubMed:21203492,
ECO:0000269|PubMed:22288649}.
-!- MISCELLANEOUS: Unlike in mammals and yeast, NUP96 and NUP98 are
not translated as a polyprotein. {ECO:0000305|PubMed:15772285}.
-!- SEQUENCE CAUTION:
Sequence=AAA98914.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
Sequence=AAF14656.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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EMBL; AY942798; AAX44044.1; -; mRNA.
EMBL; AF411838; AAN03675.1; -; Genomic_DNA.
EMBL; AF411839; AAN03676.1; -; mRNA.
EMBL; U53501; AAA98914.1; ALT_SEQ; Genomic_DNA.
EMBL; AC011713; AAF14656.1; ALT_SEQ; Genomic_DNA.
EMBL; CP002684; AEE36436.1; -; Genomic_DNA.
PIR; B96839; B96839.
RefSeq; NP_178183.2; NM_106716.4.
UniGene; At.21888; -.
ProteinModelPortal; Q8LLD0; -.
SMR; Q8LLD0; -.
STRING; 3702.AT1G80680.1; -.
MEROPS; S59.A01; -.
iPTMnet; Q8LLD0; -.
PaxDb; Q8LLD0; -.
EnsemblPlants; AT1G80680.1; AT1G80680.1; AT1G80680.
GeneID; 844407; -.
Gramene; AT1G80680.1; AT1G80680.1; AT1G80680.
KEGG; ath:AT1G80680; -.
Araport; AT1G80680; -.
TAIR; locus:2025737; AT1G80680.
eggNOG; ENOG410IU4R; Eukaryota.
eggNOG; ENOG410ZXB8; LUCA.
HOGENOM; HOG000239775; -.
InParanoid; Q8LLD0; -.
KO; K14297; -.
OMA; RWKFEVD; -.
OrthoDB; EOG0936013U; -.
PhylomeDB; Q8LLD0; -.
PRO; PR:Q8LLD0; -.
Proteomes; UP000006548; Chromosome 1.
Genevisible; Q8LLD0; AT.
GO; GO:0005635; C:nuclear envelope; IDA:TAIR.
GO; GO:0031965; C:nuclear membrane; IDA:TAIR.
GO; GO:0044614; C:nuclear pore cytoplasmic filaments; IBA:GO_Central.
GO; GO:0005634; C:nucleus; IDA:TAIR.
GO; GO:0008139; F:nuclear localization sequence binding; IBA:GO_Central.
GO; GO:0005487; F:nucleocytoplasmic transporter activity; IBA:GO_Central.
GO; GO:0015288; F:porin activity; ISS:TAIR.
GO; GO:0003723; F:RNA binding; IBA:GO_Central.
GO; GO:0017056; F:structural constituent of nuclear pore; IBA:GO_Central.
GO; GO:0006952; P:defense response; IEA:UniProtKB-KW.
GO; GO:0009870; P:defense response signaling pathway, resistance gene-dependent; IMP:TAIR.
GO; GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.
GO; GO:0000973; P:posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery; IBA:GO_Central.
GO; GO:0006606; P:protein import into nucleus; IBA:GO_Central.
GO; GO:0009733; P:response to auxin; IGI:UniProtKB.
GO; GO:0034398; P:telomere tethering at nuclear periphery; IBA:GO_Central.
Gene3D; 3.30.1610.10; -; 1.
InterPro; IPR021967; Nup96.
InterPro; IPR007230; Peptidase_S59.
InterPro; IPR036903; Peptidase_S59_sf.
Pfam; PF04096; Nucleoporin2; 1.
Pfam; PF12110; Nup96; 1.
SUPFAM; SSF82215; SSF82215; 1.
PROSITE; PS51434; NUP_C; 1.
1: Evidence at protein level;
Complete proteome; Membrane; mRNA transport; Nuclear pore complex;
Nucleus; Phosphoprotein; Plant defense; Protein transport;
Reference proteome; Stress response; Translocation; Transport.
CHAIN 1 1046 Nuclear pore complex protein NUP96.
/FTId=PRO_0000425594.
DOMAIN 51 187 Peptidase S59. {ECO:0000255|PROSITE-
ProRule:PRU00765}.
MOD_RES 523 523 Phosphoserine.
{ECO:0000244|PubMed:19245862,
ECO:0000244|PubMed:19376835}.
CONFLICT 279 279 S -> A (in Ref. 2; AAN03675).
{ECO:0000305}.
SEQUENCE 1046 AA; 119154 MW; DCA81819C7A0845E CRC64;
MTSLSIQPFP EISRMARDLD SRKKRRISLD GIAALCEHSK EIIDSLPMLN SPDYFLKPCI
NELVEREIES PDYCSRVPDF TIGRIGYGYI RFLGNTDVRR LDLDHIVKFH RHEVIVYDDE
SSKPVVGEGL NKAAEVTLVV NIPDLTWGKQ QVNHIAYKLK QSTERQGATF ISFDPDNGLW
KFFVPHFSRF GLSDDEAEDI AMDDAPGLGD PVGLDGKKVA DIDEEDQMET SELELSHSLP
AHLGLDPEKM KEMRMLMFPN EDEDESEDFR EQTSHLMTSL TKRNVRPSQK IAQRNSHQDP
PPVVRKTPLA LLEYNPGNDK SSPGSILMVQ QNKNLAVRKS KTGGFELDIS HVTPLTDNYS
RNVVDAALFM GRSFRAGWGP NGVLFHTGKP ICSSSSQMVL SSVINKEKIA IDKVVWDRKG
KVQKELIDSA FEAPLSLHKE LNHVEEEVRF GSFSLKLQNV VTDRVVLSDI CRSYIGIIEK
QLEVAGLSTS AKLFLMHQVM VWELIKVLFS ERQSTERLMY AASDNEEDVM QDVKEDSAKI
DTEALPLIRR AEFSCWLQES VSHRVQEDVS DLNGSSYLEH LFFLLTGREL DSAVELAISK
GDVRLACLLS QAGGSTVNRN DILQQLHLWR RNGLDFNFIE KERIKLYELL AGNIHDALQD
FTIDWKRFLG LLMWHHLPPD SSLPIIFRSY QLLLNQAKAP WPVPIYIDEG PADGFVSDNK
HSDILYYLML LHSKEEEEFG FLQTMFSAFS STDDPLDYHM IWHHRGILEA VGAFTSDDLH
TLDMGFVAQL LSQGLCHWAI YVVLHIPFRE DHPYLHVTVI REILFQYCET WSSMESQRQF
IKDLGIPSEW MHEALAVYYN YHGDFVKALD QFIECANWQR AHSIFMTSVA HSLFLSANHS
EIWRIATSMD DRKSEIENWD LGAGIYMSFY LLKSSLQEDA DTMVELEPLD STNESCRNFV
GRLNESLAVW GDRLPVEARV AYSKMAEEIC DLLLSDLSKN PSRETQLTCF ETAFDAPLPE
DVRSTHLQDA VSLFSLYLSE TGQISA


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