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Nuclear receptor ROR-beta (Nuclear receptor RZR-beta) (Nuclear receptor subfamily 1 group F member 2) (Retinoid-related orphan receptor-beta)

 RORB_MOUSE              Reviewed;         470 AA.
Q8R1B8; Q0PQZ2; Q0PQZ3; Q1MVR9;
21-JUN-2004, integrated into UniProtKB/Swiss-Prot.
23-JAN-2007, sequence version 3.
20-JUN-2018, entry version 143.
RecName: Full=Nuclear receptor ROR-beta;
AltName: Full=Nuclear receptor RZR-beta;
AltName: Full=Nuclear receptor subfamily 1 group F member 2;
AltName: Full=Retinoid-related orphan receptor-beta;
Name=Rorb; Synonyms=Nr1f2;
Mus musculus (Mouse).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
NCBI_TaxID=10090;
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2), FUNCTION IN CONE
PHOTORECEPTOR DEVELOPMENT, TISSUE SPECIFICITY, DEVELOPMENTAL STAGE,
DISRUPTION PHENOTYPE, SUBCELLULAR LOCATION, AND DNA-BINDING.
STRAIN=C57BL/6J; TISSUE=Embryonic eye;
PubMed=16574740; DOI=10.1210/me.2005-0505;
Srinivas M., Ng L., Liu H., Jia L., Forrest D.;
"Activation of the blue opsin gene in cone photoreceptor development
by retinoid-related orphan receptor beta.";
Mol. Endocrinol. 20:1728-1741(2006).
[2]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
STRAIN=C57BL/6J; TISSUE=Brain;
Takano A., Katsuyama Y.;
"Mouse ROR beta partial cDNA.";
Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
STRAIN=C57BL/6J; TISSUE=Retina;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[4]
FUNCTION IN CIRCADIAN RHYTHMS AND DEVELOPMENT, DISRUPTION PHENOTYPE,
AND TISSUE SPECIFICITY.
PubMed=9670004; DOI=10.1093/emboj/17.14.3867;
Andre E., Conquet F., Steinmayr M., Stratton S.C., Porciatti V.,
Becker-Andre M.;
"Disruption of retinoid-related orphan receptor beta changes circadian
behavior, causes retinal degeneration and leads to vacillans phenotype
in mice.";
EMBO J. 17:3867-3877(1998).
[5]
FUNCTION IN CIRCADIAN RHYTHMS, AND DISRUPTION PHENOTYPE.
PubMed=17303680; DOI=10.1152/ajpregu.00687.2006;
Masana M.I., Sumaya I.C., Becker-Andre M., Dubocovich M.L.;
"Behavioral characterization and modulation of circadian rhythms by
light and melatonin in C3H/HeN mice homozygous for the RORbeta
knockout.";
Am. J. Physiol. 292:R2357-R2367(2007).
[6]
FUNCTION IN ROD DIFFERENTIATION, AND DISRUPTION PHENOTYPE.
PubMed=19805139; DOI=10.1073/pnas.0902425106;
Jia L., Oh E.C., Ng L., Srinivas M., Brooks M., Swaroop A.,
Forrest D.;
"Retinoid-related orphan nuclear receptor RORbeta is an early-acting
factor in rod photoreceptor development.";
Proc. Natl. Acad. Sci. U.S.A. 106:17534-17539(2009).
[7]
FUNCTION IN NEUROGENESIS, DEVELOPMENTAL STAGE, AND TISSUE SPECIFICITY.
PubMed=21799210; DOI=10.1093/cercor/bhr182;
Jabaudon D., Shnider S.J., Tischfield D.J., Galazo M.J., Macklis J.D.;
"RORbeta induces barrel-like neuronal clusters in the developing
neocortex.";
Cereb. Cortex 22:996-1006(2012).
[8]
FUNCTION IN OSTEOGENESIS, TISSUE SPECIFICITY, AND INDUCTION BY AGING.
PubMed=22189870; DOI=10.1002/jbmr.1502;
Roforth M.M., Liu G., Khosla S., Monroe D.G.;
"Examination of nuclear receptor expression in osteoblasts reveals
Rorbeta as an important regulator of osteogenesis.";
J. Bone Miner. Res. 27:891-901(2012).
[9]
FUNCTION IN RETINA DEVELOPMENT (ISOFORM 1), DISRUPTION PHENOTYPE
(ISOFORM 1), TISSUE SPECIFICITY, AND DEVELOPMENTAL STAGE (ISOFORMS 1
AND 2).
PubMed=23652001; DOI=10.1038/ncomms2793;
Liu H., Kim S.Y., Fu Y., Wu X., Ng L., Swaroop A., Forrest D.;
"An isoform of retinoid-related orphan receptor beta directs
differentiation of retinal amacrine and horizontal interneurons.";
Nat. Commun. 4:1813-1813(2013).
-!- FUNCTION: Nuclear receptor that binds DNA as a monomer to ROR
response elements (RORE) containing a single core motif half-site
5'-AGGTCA-3' preceded by a short A-T-rich sequence. Considered to
have intrinsic transcriptional activity, have some natural ligands
such as all-trans retinoic acid (ATRA) and other retinoids which
act as inverse agonists repressing the transcriptional activity.
Required for normal postnatal development of rod and cone
photoreceptor cells. Modulates rod photoreceptors differentiation
at least by inducing the transcription factor NRL-mediated
pathway. In cone photoreceptor cells, regulates transcription of
OPN1SW. Involved in the regulation of the period length and
stability of the circadian rhythm. May control cytoarchitectural
patterning of neocortical neurons during development. May act in a
dose-dependent manner to regulate barrel formation upon
innervation of layer IV neurons by thalamocortical axons. May play
a role in the suppression of osteoblastic differentiation through
the inhibition of RUNX2 transcriptional activity.
-!- FUNCTION: Isoform 1 is critical for hindlimb motor control and for
the differentiation of amacrine and horizontal cells in the
retina. Regulates the expression of PTF1A synergistically with
FOXN4.
-!- SUBUNIT: Monomer. Interacts with CRX.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-
ProRule:PRU00407, ECO:0000269|PubMed:16574740}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative promoter usage; Named isoforms=2;
Name=2;
IsoId=Q8R1B8-2; Sequence=Displayed;
Name=1;
IsoId=Q8R1B8-1; Sequence=VSP_022576;
-!- TISSUE SPECIFICITY: Expressed in inner and outer neuroblastic
layer as well as in the ganglion cell layer of the developing
retina. Expressed in bone marrow osteoprogenitor cells.
{ECO:0000269|PubMed:16574740, ECO:0000269|PubMed:21799210,
ECO:0000269|PubMed:22189870, ECO:0000269|PubMed:23652001,
ECO:0000269|PubMed:9670004}.
-!- DEVELOPMENTAL STAGE: Expressed in the lateral cortical plate at
E18.5 and only very weakly expressed by cortical neurons at E15.5.
Expression progressively increases in layer IV neurons of the
prospective somatosensory, visual and auditory cortices. At much
lower levels, also expressed by scattered neurons in layer V in
these areas. By P4, expression is striking in the whisker barrel
cortex of the somatosensory cortex. During retinal development,
isoform 1 is broadly expressed in between E13.5 and P5 then
declines and is maintained at lower levels into adulthood. At
E15.5, is expressed in the immature cochlea, brainstem, spinal
cord and cerebral cortex. Isoform 2 is first detected at low
levels at late embryonic stages (E18.5), the expression highly
increases during the first postnatal week and is maintained during
the adulthood. {ECO:0000269|PubMed:16574740,
ECO:0000269|PubMed:21799210}.
-!- INDUCTION: Induced by aging in bone marrow.
{ECO:0000269|PubMed:22189870}.
-!- DOMAIN: AF-2 (activation function-2) motif is required for
recruiting coregulators containing the LXXLL motif, such as NCOA1,
and control the transactivational activity. {ECO:0000250}.
-!- DISRUPTION PHENOTYPE: Mice are blind, show juvenile ataxia, duck
gait, hind paw clasping reflex as well as delayed onset of male
fertility. They suffer a degeneration of the retina during
postnatal development with severe defects in photoreceptor cell
morphology. Mice display reduced anxiety and learned helplessness-
related behaviors. They also show a significant increase of the
circadian period. Knockouts for isoform 1 display duck gait and
lack amacrine and horizontal cells with an excess of ganglion
cells in the retina. {ECO:0000269|PubMed:16574740,
ECO:0000269|PubMed:17303680, ECO:0000269|PubMed:19805139,
ECO:0000269|PubMed:9670004}.
-!- SIMILARITY: Belongs to the nuclear hormone receptor family. NR1
subfamily. {ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=AAH24842.2; Type=Miscellaneous discrepancy; Note=Intron retention.; Evidence={ECO:0000305};
Sequence=AAH58269.1; Type=Miscellaneous discrepancy; Note=Intron retention.; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution-NoDerivs License
-----------------------------------------------------------------------
EMBL; BC024842; AAH24842.2; ALT_SEQ; mRNA.
EMBL; BC058269; AAH58269.1; ALT_SEQ; mRNA.
EMBL; DQ779923; ABG77269.1; -; mRNA.
EMBL; DQ779924; ABG77270.1; -; mRNA.
EMBL; AB258405; BAE93688.1; -; mRNA.
CCDS; CCDS37932.1; -. [Q8R1B8-1]
CCDS; CCDS37933.1; -. [Q8R1B8-2]
RefSeq; NP_001036819.1; NM_001043354.2. [Q8R1B8-1]
RefSeq; NP_001276850.1; NM_001289921.1.
RefSeq; NP_666207.3; NM_146095.4. [Q8R1B8-2]
UniGene; Mm.234641; -.
ProteinModelPortal; Q8R1B8; -.
SMR; Q8R1B8; -.
BioGrid; 230457; 7.
STRING; 10090.ENSMUSP00000047597; -.
iPTMnet; Q8R1B8; -.
PhosphoSitePlus; Q8R1B8; -.
PaxDb; Q8R1B8; -.
PRIDE; Q8R1B8; -.
Ensembl; ENSMUST00000040153; ENSMUSP00000047597; ENSMUSG00000036192. [Q8R1B8-2]
Ensembl; ENSMUST00000112832; ENSMUSP00000108451; ENSMUSG00000036192. [Q8R1B8-1]
GeneID; 225998; -.
KEGG; mmu:225998; -.
UCSC; uc008gyc.2; mouse. [Q8R1B8-2]
UCSC; uc008gye.2; mouse. [Q8R1B8-1]
CTD; 6096; -.
MGI; MGI:1343464; Rorb.
eggNOG; KOG4216; Eukaryota.
eggNOG; ENOG410XUGR; LUCA.
GeneTree; ENSGT00870000136388; -.
HOGENOM; HOG000010200; -.
HOVERGEN; HBG106848; -.
InParanoid; Q8R1B8; -.
KO; K08533; -.
OMA; CTLHTEE; -.
OrthoDB; EOG091G0649; -.
PhylomeDB; Q8R1B8; -.
TreeFam; TF319910; -.
Reactome; R-MMU-383280; Nuclear Receptor transcription pathway.
ChiTaRS; Rorb; mouse.
PRO; PR:Q8R1B8; -.
Proteomes; UP000000589; Chromosome 19.
Bgee; ENSMUSG00000036192; -.
CleanEx; MM_RORB; -.
ExpressionAtlas; Q8R1B8; baseline and differential.
Genevisible; Q8R1B8; MM.
GO; GO:0005634; C:nucleus; IDA:UniProtKB.
GO; GO:0003700; F:DNA binding transcription factor activity; IDA:UniProtKB.
GO; GO:0008502; F:melatonin receptor activity; ISO:MGI.
GO; GO:0004879; F:nuclear receptor activity; IEA:InterPro.
GO; GO:0000978; F:RNA polymerase II proximal promoter sequence-specific DNA binding; IDA:NTNU_SB.
GO; GO:0043565; F:sequence-specific DNA binding; IDA:UniProtKB.
GO; GO:0003707; F:steroid hormone receptor activity; IEA:InterPro.
GO; GO:0008134; F:transcription factor binding; IPI:UniProtKB.
GO; GO:0001077; F:transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding; IDA:NTNU_SB.
GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
GO; GO:0035881; P:amacrine cell differentiation; IMP:UniProtKB.
GO; GO:0071300; P:cellular response to retinoic acid; ISS:UniProtKB.
GO; GO:0042462; P:eye photoreceptor cell development; IMP:UniProtKB.
GO; GO:0045668; P:negative regulation of osteoblast differentiation; IDA:UniProtKB.
GO; GO:0045892; P:negative regulation of transcription, DNA-templated; ISS:UniProtKB.
GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IDA:NTNU_SB.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IDA:UniProtKB.
GO; GO:0042752; P:regulation of circadian rhythm; IMP:UniProtKB.
GO; GO:0060041; P:retina development in camera-type eye; IMP:UniProtKB.
GO; GO:0046549; P:retinal cone cell development; IDA:UniProtKB.
GO; GO:0046548; P:retinal rod cell development; IMP:UniProtKB.
GO; GO:0048511; P:rhythmic process; IEA:UniProtKB-KW.
GO; GO:0007601; P:visual perception; IEA:UniProtKB-KW.
Gene3D; 3.30.50.10; -; 1.
InterPro; IPR035500; NHR_like_dom_sf.
InterPro; IPR000536; Nucl_hrmn_rcpt_lig-bd.
InterPro; IPR001723; Nuclear_hrmn_rcpt.
InterPro; IPR003079; ROR_rcpt.
InterPro; IPR001628; Znf_hrmn_rcpt.
InterPro; IPR013088; Znf_NHR/GATA.
Pfam; PF00104; Hormone_recep; 1.
Pfam; PF00105; zf-C4; 1.
PRINTS; PR01293; RORNUCRECPTR.
PRINTS; PR00398; STRDHORMONER.
PRINTS; PR00047; STROIDFINGER.
SMART; SM00430; HOLI; 1.
SMART; SM00399; ZnF_C4; 1.
SUPFAM; SSF48508; SSF48508; 1.
PROSITE; PS51843; NR_LBD; 1.
PROSITE; PS00031; NUCLEAR_REC_DBD_1; 1.
PROSITE; PS51030; NUCLEAR_REC_DBD_2; 1.
1: Evidence at protein level;
Activator; Alternative promoter usage; Biological rhythms;
Complete proteome; Developmental protein; DNA-binding; Metal-binding;
Nucleus; Receptor; Reference proteome; Sensory transduction;
Transcription; Transcription regulation; Vision; Zinc; Zinc-finger.
CHAIN 1 470 Nuclear receptor ROR-beta.
/FTId=PRO_0000053515.
DOMAIN 222 460 NR LBD. {ECO:0000255|PROSITE-
ProRule:PRU01189}.
DNA_BIND 18 93 Nuclear receptor. {ECO:0000255|PROSITE-
ProRule:PRU00407}.
ZN_FING 21 41 NR C4-type. {ECO:0000255|PROSITE-
ProRule:PRU00407}.
ZN_FING 57 81 NR C4-type. {ECO:0000255|PROSITE-
ProRule:PRU00407}.
REGION 94 221 Hinge. {ECO:0000255}.
MOTIF 456 461 AF-2.
VAR_SEQ 1 13 MCENQPKTKADGT -> MR (in isoform 1).
{ECO:0000303|PubMed:16574740,
ECO:0000303|Ref.2}.
/FTId=VSP_022576.
CONFLICT 107 107 E -> G (in Ref. 2; BAE93688).
{ECO:0000305}.
CONFLICT 220 220 M -> L (in Ref. 2; BAE93688).
{ECO:0000305}.
CONFLICT 247 247 Q -> H (in Ref. 2; BAE93688).
{ECO:0000305}.
SEQUENCE 470 AA; 53118 MW; 6E2F30DB56E94B86 CRC64;
MCENQPKTKA DGTAQIEVIP CKICGDKSSG IHYGVITCEG CKGFFRRSQQ NNASYSCPRQ
RNCLIDRTNR NRCQHCRLQK CLALGMSRDA VKFGRMSKKQ RDSLYAEVQK HQQRLQEQRQ
QQSGEAEALA RVYSSSISNG LSNLNTETGG TYANGHVIDL PKSEGYYSID SGQPSPDQSG
LDMTGIKQIK QEPIYDLTSV PNLFTYSSFN NGQLAPGITM SEIDRIAQNI IKSHLETCQY
TMEELHQLAW QTHTYEEIKA YQSKSREALW QQCAIQITHA IQYVVEFAKR ITGFMELCQN
DQILLLKSGC LEVVLVRMCR AFNPLNNTVL FEGKYGGMQM FKALGSDDLV NEAFDFAKNL
CSLQLTEEEI ALFSSAVLIS PDRAWLIEPR KVQKLQEKIY FALQHVIQKN HLDDETLAKL
IAKIPTITAV CNLHGEKLQV FKQSHPDIVN TLFPPLYKEL FNPDCAAVCK


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