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Nuclear receptor ROR-beta (Nuclear receptor RZR-beta) (Nuclear receptor subfamily 1 group F member 2) (Retinoid-related orphan receptor-beta)

 RORB_HUMAN              Reviewed;         470 AA.
Q92753; Q8WX73;
01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
23-JAN-2007, sequence version 3.
05-DEC-2018, entry version 170.
RecName: Full=Nuclear receptor ROR-beta;
AltName: Full=Nuclear receptor RZR-beta;
AltName: Full=Nuclear receptor subfamily 1 group F member 2;
AltName: Full=Retinoid-related orphan receptor-beta;
Name=RORB; Synonyms=NR1F2, RZRB;
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606;
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
TISSUE=Retina;
Becker-Andre M.;
Submitted (OCT-1996) to the EMBL/GenBank/DDBJ databases.
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
TISSUE=Retina;
PubMed=17974005; DOI=10.1186/1471-2164-8-399;
Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U.,
Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H.,
Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K.,
Ottenwaelder B., Poustka A., Wiemann S., Schupp I.;
"The full-ORF clone resource of the German cDNA consortium.";
BMC Genomics 8:399-399(2007).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=15164053; DOI=10.1038/nature02465;
Humphray S.J., Oliver K., Hunt A.R., Plumb R.W., Loveland J.E.,
Howe K.L., Andrews T.D., Searle S., Hunt S.E., Scott C.E., Jones M.C.,
Ainscough R., Almeida J.P., Ambrose K.D., Ashwell R.I.S.,
Babbage A.K., Babbage S., Bagguley C.L., Bailey J., Banerjee R.,
Barker D.J., Barlow K.F., Bates K., Beasley H., Beasley O., Bird C.P.,
Bray-Allen S., Brown A.J., Brown J.Y., Burford D., Burrill W.,
Burton J., Carder C., Carter N.P., Chapman J.C., Chen Y., Clarke G.,
Clark S.Y., Clee C.M., Clegg S., Collier R.E., Corby N., Crosier M.,
Cummings A.T., Davies J., Dhami P., Dunn M., Dutta I., Dyer L.W.,
Earthrowl M.E., Faulkner L., Fleming C.J., Frankish A.,
Frankland J.A., French L., Fricker D.G., Garner P., Garnett J.,
Ghori J., Gilbert J.G.R., Glison C., Grafham D.V., Gribble S.,
Griffiths C., Griffiths-Jones S., Grocock R., Guy J., Hall R.E.,
Hammond S., Harley J.L., Harrison E.S.I., Hart E.A., Heath P.D.,
Henderson C.D., Hopkins B.L., Howard P.J., Howden P.J., Huckle E.,
Johnson C., Johnson D., Joy A.A., Kay M., Keenan S., Kershaw J.K.,
Kimberley A.M., King A., Knights A., Laird G.K., Langford C.,
Lawlor S., Leongamornlert D.A., Leversha M., Lloyd C., Lloyd D.M.,
Lovell J., Martin S., Mashreghi-Mohammadi M., Matthews L., McLaren S.,
McLay K.E., McMurray A., Milne S., Nickerson T., Nisbett J.,
Nordsiek G., Pearce A.V., Peck A.I., Porter K.M., Pandian R.,
Pelan S., Phillimore B., Povey S., Ramsey Y., Rand V., Scharfe M.,
Sehra H.K., Shownkeen R., Sims S.K., Skuce C.D., Smith M.,
Steward C.A., Swarbreck D., Sycamore N., Tester J., Thorpe A.,
Tracey A., Tromans A., Thomas D.W., Wall M., Wallis J.M., West A.P.,
Whitehead S.L., Willey D.L., Williams S.A., Wilming L., Wray P.W.,
Young L., Ashurst J.L., Coulson A., Blocker H., Durbin R.M.,
Sulston J.E., Hubbard T., Jackson M.J., Bentley D.R., Beck S.,
Rogers J., Dunham I.;
"DNA sequence and analysis of human chromosome 9.";
Nature 429:369-374(2004).
-!- FUNCTION: Nuclear receptor that binds DNA as a monomer to ROR
response elements (RORE) containing a single core motif half-site
5'-AGGTCA-3' preceded by a short A-T-rich sequence. Considered to
have intrinsic transcriptional activity, have some natural ligands
such as all-trans retinoic acid (ATRA) and other retinoids which
act as inverse agonists repressing the transcriptional activity.
Required for normal postnatal development of rod and cone
photoreceptor cells. Modulates rod photoreceptors differentiation
at least by inducing the transcription factor NRL-mediated
pathway. In cone photoreceptor cells, regulates transcription of
OPN1SW. Involved in the regulation of the period length and
stability of the circadian rhythm. May control cytoarchitectural
patterning of neocortical neurons during development. May act in a
dose-dependent manner to regulate barrel formation upon
innervation of layer IV neurons by thalamocortical axons. May play
a role in the suppression of osteoblastic differentiation through
the inhibition of RUNX2 transcriptional activity (By similarity).
{ECO:0000250}.
-!- FUNCTION: Isoform 1 is critical for hindlimb motor control and for
the differentiation of amacrine and horizontal cells in the
retina. Regulates the expression of PTF1A synergistically with
FOXN4 (By similarity). {ECO:0000250}.
-!- SUBUNIT: Monomer. Interacts with CRX (By similarity).
{ECO:0000250}.
-!- INTERACTION:
O08785:Clock (xeno); NbExp=2; IntAct=EBI-6144615, EBI-79859;
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-
ProRule:PRU00407}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative promoter usage; Named isoforms=2;
Name=2;
IsoId=Q92753-2; Sequence=Displayed;
Name=1;
IsoId=Q92753-1; Sequence=VSP_022575;
-!- DOMAIN: AF-2 (activation function-2) motif is required for
recruiting coregulators containing the LXXLL motif, such as NCOA1,
and control the transactivational activity. {ECO:0000250}.
-!- SIMILARITY: Belongs to the nuclear hormone receptor family. NR1
subfamily. {ECO:0000305}.
-----------------------------------------------------------------------
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EMBL; Y08639; CAA69929.1; -; mRNA.
EMBL; BX647070; -; NOT_ANNOTATED_CDS; mRNA.
EMBL; AL137018; -; NOT_ANNOTATED_CDS; Genomic_DNA.
CCDS; CCDS6646.1; -. [Q92753-1]
UniGene; Hs.494178; -.
ProteinModelPortal; Q92753; -.
SMR; Q92753; -.
IntAct; Q92753; 16.
STRING; 9606.ENSP00000366093; -.
BindingDB; Q92753; -.
ChEMBL; CHEMBL3091268; -.
DrugBank; DB01065; Melatonin.
GuidetoPHARMACOLOGY; 599; -.
iPTMnet; Q92753; -.
PhosphoSitePlus; Q92753; -.
DMDM; 124028630; -.
PaxDb; Q92753; -.
PeptideAtlas; Q92753; -.
PRIDE; Q92753; -.
ProteomicsDB; 75444; -.
ProteomicsDB; 75445; -. [Q92753-1]
DNASU; 6096; -.
Ensembl; ENST00000376896; ENSP00000366093; ENSG00000198963. [Q92753-1]
Ensembl; ENST00000396204; ENSP00000379507; ENSG00000198963. [Q92753-2]
UCSC; uc004ajh.4; human. [Q92753-2]
DisGeNET; 6096; -.
EuPathDB; HostDB:ENSG00000198963.10; -.
GeneCards; RORB; -.
HGNC; HGNC:10259; RORB.
HPA; HPA008393; -.
MIM; 601972; gene.
neXtProt; NX_Q92753; -.
OpenTargets; ENSG00000198963; -.
PharmGKB; PA34631; -.
eggNOG; KOG4216; Eukaryota.
eggNOG; ENOG410XUGR; LUCA.
GeneTree; ENSGT00940000157708; -.
HOGENOM; HOG000010200; -.
HOVERGEN; HBG106848; -.
InParanoid; Q92753; -.
OMA; CTLHTEE; -.
OrthoDB; EOG091G0649; -.
PhylomeDB; Q92753; -.
TreeFam; TF319910; -.
Reactome; R-HSA-383280; Nuclear Receptor transcription pathway.
ChiTaRS; RORB; human.
PRO; PR:Q92753; -.
Proteomes; UP000005640; Chromosome 9.
Bgee; ENSG00000198963; Expressed in 149 organ(s), highest expression level in primary visual cortex.
CleanEx; HS_RORB; -.
ExpressionAtlas; Q92753; baseline and differential.
Genevisible; Q92753; HS.
GO; GO:0005654; C:nucleoplasm; TAS:Reactome.
GO; GO:0005634; C:nucleus; ISS:UniProtKB.
GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:UniProtKB.
GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; ISA:NTNU_SB.
GO; GO:0008502; F:melatonin receptor activity; IBA:GO_Central.
GO; GO:0004879; F:nuclear receptor activity; TAS:ProtInc.
GO; GO:0001077; F:proximal promoter DNA-binding transcription activator activity, RNA polymerase II-specific; IEA:Ensembl.
GO; GO:0000978; F:RNA polymerase II proximal promoter sequence-specific DNA binding; IEA:Ensembl.
GO; GO:0003707; F:steroid hormone receptor activity; IEA:InterPro.
GO; GO:0008134; F:transcription factor binding; IEA:Ensembl.
GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
GO; GO:0035881; P:amacrine cell differentiation; ISS:UniProtKB.
GO; GO:0071300; P:cellular response to retinoic acid; ISS:UniProtKB.
GO; GO:0042462; P:eye photoreceptor cell development; ISS:UniProtKB.
GO; GO:0045668; P:negative regulation of osteoblast differentiation; ISS:UniProtKB.
GO; GO:0045892; P:negative regulation of transcription, DNA-templated; ISS:UniProtKB.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; ISS:UniProtKB.
GO; GO:0042752; P:regulation of circadian rhythm; ISS:UniProtKB.
GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:ProtInc.
GO; GO:0060041; P:retina development in camera-type eye; ISS:UniProtKB.
GO; GO:0046549; P:retinal cone cell development; ISS:UniProtKB.
GO; GO:0046548; P:retinal rod cell development; ISS:UniProtKB.
GO; GO:0048511; P:rhythmic process; IEA:UniProtKB-KW.
GO; GO:0006367; P:transcription initiation from RNA polymerase II promoter; TAS:Reactome.
GO; GO:0007601; P:visual perception; IEA:UniProtKB-KW.
Gene3D; 3.30.50.10; -; 1.
InterPro; IPR035500; NHR_like_dom_sf.
InterPro; IPR000536; Nucl_hrmn_rcpt_lig-bd.
InterPro; IPR001723; Nuclear_hrmn_rcpt.
InterPro; IPR003079; ROR_rcpt.
InterPro; IPR001628; Znf_hrmn_rcpt.
InterPro; IPR013088; Znf_NHR/GATA.
Pfam; PF00104; Hormone_recep; 1.
Pfam; PF00105; zf-C4; 1.
PRINTS; PR01293; RORNUCRECPTR.
PRINTS; PR00398; STRDHORMONER.
PRINTS; PR00047; STROIDFINGER.
SMART; SM00430; HOLI; 1.
SMART; SM00399; ZnF_C4; 1.
SUPFAM; SSF48508; SSF48508; 1.
PROSITE; PS51843; NR_LBD; 1.
PROSITE; PS00031; NUCLEAR_REC_DBD_1; 1.
PROSITE; PS51030; NUCLEAR_REC_DBD_2; 1.
1: Evidence at protein level;
Activator; Alternative promoter usage; Biological rhythms;
Complete proteome; Developmental protein; DNA-binding; Metal-binding;
Nucleus; Receptor; Reference proteome; Sensory transduction;
Transcription; Transcription regulation; Vision; Zinc; Zinc-finger.
CHAIN 1 470 Nuclear receptor ROR-beta.
/FTId=PRO_0000053514.
DOMAIN 222 460 NR LBD. {ECO:0000255|PROSITE-
ProRule:PRU01189}.
DNA_BIND 18 93 Nuclear receptor. {ECO:0000255|PROSITE-
ProRule:PRU00407}.
ZN_FING 21 41 NR C4-type. {ECO:0000255|PROSITE-
ProRule:PRU00407}.
ZN_FING 57 81 NR C4-type. {ECO:0000255|PROSITE-
ProRule:PRU00407}.
MOTIF 456 461 AF-2.
VAR_SEQ 1 13 MCENQLKTKADAT -> MR (in isoform 1).
{ECO:0000303|Ref.1}.
/FTId=VSP_022575.
CONFLICT 121 121 Q -> E (in Ref. 1; CAA69929).
{ECO:0000305}.
CONFLICT 128 128 A -> R (in Ref. 1; CAA69929).
{ECO:0000305}.
CONFLICT 156 156 H -> S (in Ref. 1; CAA69929).
{ECO:0000305}.
CONFLICT 170 170 D -> V (in Ref. 1; CAA69929).
{ECO:0000305}.
CONFLICT 468 468 G -> A (in Ref. 1; CAA69929).
{ECO:0000305}.
SEQUENCE 470 AA; 53220 MW; F41FAF95FA5E7100 CRC64;
MCENQLKTKA DATAQIEVIP CKICGDKSSG IHYGVITCEG CKGFFRRSQQ NNASYSCPRQ
RNCLIDRTNR NRCQHCRLQK CLALGMSRDA VKFGRMSKKQ RDSLYAEVQK HQQRLQEQRQ
QQSGEAEALA RVYSSSISNG LSNLNNETSG TYANGHVIDL PKSEGYYNVD SGQPSPDQSG
LDMTGIKQIK QEPIYDLTSV PNLFTYSSFN NGQLAPGITM TEIDRIAQNI IKSHLETCQY
TMEELHQLAW QTHTYEEIKA YQSKSREALW QQCAIQITHA IQYVVEFAKR ITGFMELCQN
DQILLLKSGC LEVVLVRMCR AFNPLNNTVL FEGKYGGMQM FKALGSDDLV NEAFDFAKNL
CSLQLTEEEI ALFSSAVLIS PDRAWLIEPR KVQKLQEKIY FALQHVIQKN HLDDETLAKL
IAKIPTITAV CNLHGEKLQV FKQSHPEIVN TLFPPLYKEL FNPDCATGCK


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