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Nucleoprotein (Nucleocapsid protein) (NC) (Protein N)

 NCAP_CVCAK              Reviewed;         382 AA.
Q04700;
01-FEB-1994, integrated into UniProtKB/Swiss-Prot.
01-FEB-1994, sequence version 1.
25-OCT-2017, entry version 70.
RecName: Full=Nucleoprotein;
AltName: Full=Nucleocapsid protein;
Short=NC;
Short=Protein N;
Name=N;
Canine coronavirus (strain K378) (CCoV) (Canine enteric coronavirus).
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage;
Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus.
NCBI_TaxID=33732;
NCBI_TaxID=9615; Canis lupus familiaris (Dog) (Canis familiaris).
[1]
NUCLEOTIDE SEQUENCE [GENOMIC RNA].
PubMed=1329312; DOI=10.1016/0042-6822(92)90174-N;
Vennema H., Rossen J.W.A., Wesseling J., Horzinek M.C.,
Rottier P.J.M.;
"Genomic organization and expression of the 3' end of the canine and
feline enteric coronaviruses.";
Virology 191:134-140(1992).
-!- FUNCTION: Major structural component of virions that associates
with genomic RNA to form a long, flexible, helical nucleocapsid.
Interaction with the M protein leads to the formation of virus
particles. Binds to cellular membranes and phospholipids. Elicits
cell-mediated immunity. May play roles in viral transcription and
translation, and/or replication.
-!- SUBUNIT: Monomer and oligomer. Both monomeric and oligomeric forms
interact with RNA. Interacts with the M protein.
-!- SUBCELLULAR LOCATION: Virion {ECO:0000250}. Host cytoplasm, host
perinuclear region {ECO:0000250}. Host endoplasmic reticulum-Golgi
intermediate compartment {ECO:0000250}. Host Golgi apparatus
{ECO:0000250}. Host nucleus, host nucleolus {ECO:0000250}.
Note=Located inside the virion, complexed with the viral RNA.
Probably associates with ER-derived membranes where it
participates in viral RNA synthesis and virus budding (By
similarity). {ECO:0000250}.
-!- PTM: Phosphorylated on serine residues. {ECO:0000250}.
-!- SIMILARITY: Belongs to the coronavirus group 1 nucleocapsid
protein family. {ECO:0000305}.
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EMBL; X66717; CAA47246.1; -; Genomic_RNA.
PIR; A44056; A44056.
ProteinModelPortal; Q04700; -.
SMR; Q04700; -.
GO; GO:0044172; C:host cell endoplasmic reticulum-Golgi intermediate compartment; IEA:UniProtKB-SubCell.
GO; GO:0044177; C:host cell Golgi apparatus; IEA:UniProtKB-SubCell.
GO; GO:0044196; C:host cell nucleolus; IEA:UniProtKB-SubCell.
GO; GO:0044220; C:host cell perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.
GO; GO:0019013; C:viral nucleocapsid; IEA:UniProtKB-KW.
GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
InterPro; IPR001218; Corona_nucleocap.
InterPro; IPR037179; Nucleocapsid_C.
InterPro; IPR037195; Nucleocapsid_N.
Pfam; PF00937; Corona_nucleoca; 1.
PIRSF; PIRSF003888; Corona_nucleocap; 1.
SUPFAM; SSF103068; SSF103068; 1.
SUPFAM; SSF110304; SSF110304; 1.
3: Inferred from homology;
Host cytoplasm; Host Golgi apparatus; Host nucleus; Phosphoprotein;
Ribonucleoprotein; RNA-binding; Viral nucleoprotein; Virion.
CHAIN 1 382 Nucleoprotein.
/FTId=PRO_0000105997.
REGION 33 159 RNA-binding. {ECO:0000250}.
REGION 231 334 Dimerization. {ECO:0000250}.
COMPBIAS 156 182 Ser-rich.
MOD_RES 156 156 Phosphoserine; by host. {ECO:0000250}.
MOD_RES 254 254 Phosphoserine; by host. {ECO:0000250}.
MOD_RES 256 256 Phosphoserine; by host. {ECO:0000250}.
SEQUENCE 382 AA; 43332 MW; 3DCBE17971A4150F CRC64;
MANQGQRVQW GVDITKKRGL SNSRGRKNNT IPLSFFNPIT LQQGSKFWNL CPRDFVPKGI
GNKDQQIGYW NRQSRYRMVK GQRKELPERW FFYYLGTGPH ADAKFKDRID GVVWVAKDGA
MNKPTTLGNR GANNESKALK FDGKVPGEFQ LEVNQSRDNS RSPSQSRSQS RNRSQSRGRQ
QSNNKKDDSV EQAVLAALKK LGVDTEKQQQ RSRSKSKERS NSKTRDTTPK NENKHTWKRT
AGKGDVTKFY GARSSSANFG DSDLVANGNG AKHYPQLAEC VPSVSSILFG SYWTAKEDGD
QIEVTFTHKY HLPKDDPKTG QFLQQINAYA RPSEVAKEQR QRKARSKSAE RVEQEVVPDA
LTENYTDVFD DTQVEIIDEV TN


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