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ORFB polyprotein [Cleaved into: Papain-like protease p48 (EC 3.4.22.-); Putative RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.4.13)]

 POLB_CHPVE              Reviewed;        3165 AA.
Q04350;
10-MAY-2005, integrated into UniProtKB/Swiss-Prot.
01-NOV-1996, sequence version 1.
23-MAY-2018, entry version 81.
RecName: Full=ORFB polyprotein;
Contains:
RecName: Full=Papain-like protease p48;
EC=3.4.22.-;
Contains:
RecName: Full=Putative RNA-directed RNA polymerase/helicase;
EC=2.7.7.48;
EC=3.6.4.13;
Cryphonectria hypovirus 1 (strain EP713) (CHV-1/EP713) (Chestnut
blight fungus hypovirulence-associated virus).
Viruses; dsRNA viruses; Hypoviridae; Hypovirus.
NCBI_TaxID=12478;
NCBI_TaxID=5116; Cryphonectria parasitica (Chestnut blight fungus) (Endothia parasitica).
[1]
NUCLEOTIDE SEQUENCE [GENOMIC RNA].
PubMed=2009854;
Shapira R., Choi G.H., Nuss D.L.;
"Virus-like genetic organization and expression strategy for a double-
stranded RNA genetic element associated with biological control of
chestnut blight.";
EMBO J. 10:731-739(1991).
[2]
PROTEOLYTIC PROCESSING OF POLYPROTEIN, PROTEIN SEQUENCE OF 419-428,
AND MUTAGENESIS OF ASP-321; HIS-323; ASP-330; CYS-341; ASP-356;
ASP-363; CYS-373; ASP-376; SER-377; SER-381; HIS-382; SER-383;
ASP-384; CYS-386; HIS-388; ASP-399; PRO-413; ASP-414; ILE-415;
LEU-416; VAL-417; GLY-418; ALA-419; GLU-420; GLU-421 AND GLY-422.
PubMed=1918054;
Shapira R., Nuss D.L.;
"Gene expression by a hypovirulence-associated virus of the chestnut
blight fungus involves two papain-like protease activities. Essential
residues and cleavage site requirements for p48 autoproteolysis.";
J. Biol. Chem. 266:19419-19425(1991).
-!- FUNCTION: Papain-like protease p48 is a cysteine protease.
-!- CATALYTIC ACTIVITY: Nucleoside triphosphate + RNA(n) = diphosphate
+ RNA(n+1).
-!- CATALYTIC ACTIVITY: ATP + H(2)O = ADP + phosphate.
-!- SUBCELLULAR LOCATION: Putative RNA-directed RNA
polymerase/helicase: Host membrane {ECO:0000305}; Multi-pass
membrane protein {ECO:0000305}.
-!- PTM: Papain-like protease p48 is autocatalytically processed. The
putative RNA-directed RNA polymerase/helicase may be further
processed. {ECO:0000269|PubMed:1918054}.
-!- MISCELLANEOUS: Hypoviruses induce hypovirulence in their fungal
host Cryphonectria parasitica. The consequence is attenuation of
the related fungal disease, chestnut blight, that causes cankers
that enlarge and kill branches and trunks. The virus-like genetic
elements consist of cytoplasmically replicating double-stranded
RNA.
-!- MISCELLANEOUS: CHV-1 strain EP713 is a highly hypovirulent strain.
-!- SIMILARITY: In the C-terminal section; belongs to the DEAD box
helicase family. {ECO:0000305}.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution (CC BY 4.0) License
-----------------------------------------------------------------------
EMBL; M57938; AAA67458.1; -; Genomic_RNA.
PIR; S15010; S15010.
RefSeq; NP_041091.1; NC_001492.1.
ProteinModelPortal; Q04350; -.
PRIDE; Q04350; -.
GeneID; 1403614; -.
KEGG; vg:1403614; -.
OrthoDB; VOG0900003L; -.
Proteomes; UP000007251; Genome.
GO; GO:0033644; C:host cell membrane; IEA:UniProtKB-SubCell.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0008234; F:cysteine-type peptidase activity; IEA:UniProtKB-KW.
GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
GO; GO:0003968; F:RNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-KW.
InterPro; IPR021912; DUF3525.
InterPro; IPR014001; Helicase_ATP-bd.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR005315; Peptidase_C8.
Pfam; PF12039; DUF3525; 2.
Pfam; PF03569; Peptidase_C8; 1.
SUPFAM; SSF52540; SSF52540; 1.
PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
1: Evidence at protein level;
ATP-binding; Complete proteome; Direct protein sequencing; Helicase;
Host membrane; Hydrolase; Membrane; Nucleotide-binding;
Nucleotidyltransferase; Protease; Reference proteome;
RNA-directed RNA polymerase; Thiol protease; Transferase;
Transmembrane; Transmembrane helix.
CHAIN 1 418 Papain-like protease p48.
/FTId=PRO_0000038881.
CHAIN 419 3165 Putative RNA-directed RNA
polymerase/helicase. {ECO:0000255}.
/FTId=PRO_0000038882.
TRANSMEM 791 811 Helical. {ECO:0000255}.
TRANSMEM 823 843 Helical. {ECO:0000255}.
TRANSMEM 1166 1186 Helical. {ECO:0000255}.
TRANSMEM 1193 1213 Helical. {ECO:0000255}.
TRANSMEM 1215 1235 Helical. {ECO:0000255}.
TRANSMEM 1356 1376 Helical. {ECO:0000255}.
TRANSMEM 2495 2515 Helical. {ECO:0000255}.
TRANSMEM 2517 2537 Helical. {ECO:0000255}.
TRANSMEM 2590 2610 Helical. {ECO:0000255}.
DOMAIN 2651 2796 Helicase ATP-binding.
{ECO:0000255|PROSITE-ProRule:PRU00541}.
NP_BIND 2664 2671 ATP. {ECO:0000255|PROSITE-
ProRule:PRU00541}.
REGION 1793 2208 RNA-directed RNA polymerase.
{ECO:0000255}.
MOTIF 2751 2754 DEFH box.
ACT_SITE 341 341 For papain-like protease p48 activity.
{ECO:0000255}.
ACT_SITE 388 388 For papain-like protease p48 activity.
{ECO:0000255}.
SITE 418 419 Cleavage; by papain-like protease p48.
MUTAGEN 321 321 D->E: No effect on cleavage.
{ECO:0000269|PubMed:1918054}.
MUTAGEN 323 323 H->S: No effect on cleavage.
{ECO:0000269|PubMed:1918054}.
MUTAGEN 330 330 D->E: No effect on cleavage.
{ECO:0000269|PubMed:1918054}.
MUTAGEN 341 341 C->S: Complete loss of cleavage.
{ECO:0000269|PubMed:1918054}.
MUTAGEN 356 356 D->E: No effect on cleavage.
{ECO:0000269|PubMed:1918054}.
MUTAGEN 363 363 D->E: No effect on cleavage.
{ECO:0000269|PubMed:1918054}.
MUTAGEN 373 373 C->S: Partial loss of cleavage.
{ECO:0000269|PubMed:1918054}.
MUTAGEN 376 376 D->E: No effect on cleavage.
{ECO:0000269|PubMed:1918054}.
MUTAGEN 377 377 S->T: No effect on cleavage.
{ECO:0000269|PubMed:1918054}.
MUTAGEN 381 381 S->T: No effect on cleavage.
{ECO:0000269|PubMed:1918054}.
MUTAGEN 382 382 H->S: No effect on cleavage.
{ECO:0000269|PubMed:1918054}.
MUTAGEN 383 383 S->T: No effect on cleavage.
{ECO:0000269|PubMed:1918054}.
MUTAGEN 384 384 D->E: No effect on cleavage.
{ECO:0000269|PubMed:1918054}.
MUTAGEN 386 386 C->S: Partial loss of cleavage.
{ECO:0000269|PubMed:1918054}.
MUTAGEN 388 388 H->S: Complete loss of cleavage.
{ECO:0000269|PubMed:1918054}.
MUTAGEN 399 399 D->E: No effect on cleavage.
{ECO:0000269|PubMed:1918054}.
MUTAGEN 413 413 P->A,R,S: No effect on cleavage.
{ECO:0000269|PubMed:1918054}.
MUTAGEN 414 414 D->A,R,S: No effect on cleavage.
{ECO:0000269|PubMed:1918054}.
MUTAGEN 415 415 I->L,R,V: Complete loss of cleavage.
{ECO:0000269|PubMed:1918054}.
MUTAGEN 416 416 L->A,E,R,S: No effect on cleavage.
{ECO:0000269|PubMed:1918054}.
MUTAGEN 416 416 L->G: Complete loss of cleavage.
{ECO:0000269|PubMed:1918054}.
MUTAGEN 417 417 V->A,G,L,M,R,S: Complete loss of
cleavage. {ECO:0000269|PubMed:1918054}.
MUTAGEN 417 417 V->I: No effect on cleavage.
{ECO:0000269|PubMed:1918054}.
MUTAGEN 418 418 G->A,E,R,S,T,V: Complete loss of
cleavage. {ECO:0000269|PubMed:1918054}.
MUTAGEN 419 419 A->G,L,S,V: No effect on cleavage.
{ECO:0000269|PubMed:1918054}.
MUTAGEN 419 419 A->R: Complete loss of cleavage.
{ECO:0000269|PubMed:1918054}.
MUTAGEN 420 420 E->A,R,S: No effect on cleavage.
{ECO:0000269|PubMed:1918054}.
MUTAGEN 420 420 E->P: Complete loss of cleavage.
{ECO:0000269|PubMed:1918054}.
MUTAGEN 421 421 E->A: No effect on cleavage.
{ECO:0000269|PubMed:1918054}.
MUTAGEN 421 421 E->P: Partial loss of cleavage.
{ECO:0000269|PubMed:1918054}.
MUTAGEN 422 422 G->P: No effect on cleavage.
{ECO:0000269|PubMed:1918054}.
SEQUENCE 3165 AA; 361718 MW; 732862977C2CD344 CRC64;
MYKEAERPIE VWRTQVMDGP TWTALSESCR DRLFFASGEG GEHMTLDIIQ PDSYTKIRLF
RSGRFEVSVD GKSFGQGGNR YRFVFRYDSL LSTPFGYPAE DKEIALQDYN HKQLLGEMFL
KLPDSYVDGR PIAEAFFRYV DDLKWDVGVF RDRRSLTELH LPASSGLTTA QVSVAKLEWP
PLPIIQAQPT ILAGIIDNFK ICFPVNGKWI YGQGLSWTRY DGDASVPTSL LSNRQHARFW
NEKDIPTGLK LSKEGFIKLW AQKSRKWQDH MARSIGLSHE AAVELVRATR VNEAKPHLVP
MEEAKEAPRQ QLVPRRSTFV DNHEEEVEID TLRVPVEEGR CFELLFNNQV TPAIFDKKPL
LKDVLGVFEE NVCTMDSLEI SHSDQCVHIV AGETFRNYDE IKAVLEVILE NEPDILVGAE
EGSVADYVKA GKHFLFENHQ WVRNGLKLAK GLAEPGQRAK DNTNPSTPRP IEDADYIHPF
DNGQPLPGRS DQWVSGFEVT RLRHHDEMPH IRSVRNTGIH GLPGDFLSNY PRLPTPVFHR
LRDLWDDVIG ILMKLEFGDN CSPVLNVTAN ADWVRSETTI NFISDQPGKA QSRPREDGGF
DILVPCRGIA TRSIRLLPLF IRLPNRFRAV ALLNGRQSDY DNYGWPVFNP VIPLPQMDSF
YVEAVAAGRS MYPPGFLLGR YDALEYLVHT ATVYGAEEAF LLPFTHHVRV YPPPRPGREI
PFGSWCKNYK FEAERFWYDA DWKLRVHETN HDFDRLIEIT KTCRRNPPEE NLQAKLEDTA
RKVCSVWQYN IMIASSVAFL VPLYFTLYVP YLQFYLHVDP GDYILLPPVL WLVWTNLCYG
YACDAWCRLF FFVEEAGKKE LVHSSEEFSS DPSSTLLIPT MGTRGDHVPP RFFANMAVLA
GVKTHLLKLQ TATYGDLENL KKGKLGSLLP GYLQNHYSVL RGYKAAFTPH VELDMPNATS
YNLAPPRSYI NKIRYLTDEN RSGASMIDRA VTWFAEELAD TFWPDWQIGC LRGCNLPRSA
DGVSLITKQP NLKTGKIGWL HGSADPAVVP KDIRDKYPLV PNGDHNEIFR HYDKIYMPGG
AGAVQTAIAC GCEVVVTDVN LDRDYHTMPT QKDFHQPSIL PYFAWLWRQG FDVKLPRVLL
VIGWLKFHYS IRYKHLEFAA DFVIRAGLFW WYGCLHLLPF MAAAIMAPRF VKKYLVGMAW
LTEPGLLMLK ALWRFPIFMV TPRWMLPFIV TVSVYNWWWP LSQDGLNYAS KRFELIFEPV
TRGKHTFSYP FGHWCLRDTN SMIVYEGKFV NPSETSIGSP FKLSKSVRPV RPGAVFHLVP
FHVQKLLDSM DEAPLPYSAN HNCTTVILKG IMYRSALGFV FAYMVSWAVY LVLRPPQAAA
TVYHWVYPER SWDTSRLYHL LLGFAAGGTV PMEVIDEEHV EEKPSVAGQS EPAAEIDNDK
ISDYDQEWWG SQDSIDTVVN DLCYLLSFLK DTAIPEEVKL DVVELAYTQL VQDEKERIPE
PKGTKILDMP NWKPGNWAKL IDETHRVLSQ FTQYTPRVLN ELVVWLKGLG ENLYRVAEPI
LMLLVRAMRA AKSVSDRATR SVYHCLCHWL DVMYGGSAPT RVKTVWGLTG LVASGMTSQK
AILAQNIAMM EYQGRGNFLD DYDNFVSNIK EPGKGLPGIN TIGGPQRRPI RYKNPVMSHQ
AAEICGLKPG EYEVDDRYQE RINDYLAEGI PQAVDGVLFG DRNPDRIARS ISRYEPEYSG
CSPEDKALVE DTARAMFEQW PEVFADRDIM LPKGVELYIK EKYSAGTPFI SSFYKSRKAL
KQAGVMDVIR KNALECISTG KYPTQFYHAF AKSQAVPGQP LLAPRMKDLR TVVSEDLSAY
MVDQIFQIEA NKRITWETYG AGSGMPLSQS MARIWDELHD LRKREGGQFI IADATAYDSN
CKPALFHGAG KLVELGFQNH PSGKGRQFAQ VVQCKFEAMQ NAWVMGITEP SYTALTFHVP
DVAVRHELES KYPAHFATFS ELLAHNNVNV TEWKRLSWEE RKACARDMQA VPGKVFLTND
PALRLQGSSW QGSFTTEPKR DEFRKYQTYF YDSKAAMRED IKRIVFANRE VISNVHHKNR
GGGTGQSATS WDNTATFKLG VISAWARATG KPPKDFFCSN RLYNTSDDTV WWSKDLLSSA
EVDRFKQAAA DFGILLEIGS TKKITEVEYL SKLPRRPTAE DSADYRAWRQ GRIENMRSSG
RFSEEQLLSI EREQLPQFLM VQNPTAILMR RTAFRYYQSS PSKFLYTSCE RGAGHALVTA
FQPALYKRFA IEYAEDLNRL CKEHHINQRY ELVSQQDRMK MQVINVNPNW KRNFKLSPRQ
EAFLRWIRQA KFPSYRQVLD IHLRIRDPDP SAHDRFIAKL DRAWRNPDEG IRDIVDGVYR
YTDMIPEEFK RFMPSTDMLY AENPWHTHNQ YVEKFIYLKL LETTTVDELT FAQFDAVAKE
SPYGICMNTI KFWEDLRDPD YLKDLLASEA MIDKVRIYQG MTVIISAMYF AMHWVELFIQ
SLFLIGPLYN LFMWSFWGLS KVYGLANTFY WHGKARSSRE ISSILPRDPY MWSKRFVSTM
ADFIPERFAL GIVPVTLVLD GLAEIIEVLF GRMWRLFANL KSVGTDFSDA RSGKSLNVPS
NPWAAYAHTY ATKAIEHGHV TVAAKTASGK STFFPAAVWA ERRNIGIKKL WIVMPRKILR
DNWEIPFDIR SQIVKRGKTL DPSADIYVTT YGHFRTRIGG LVPRDNLVFF DEFHEMDGFM
LQDVEDWKGP TIFMSATPVA LHGMAGIPFL EPTLPKRFNL TVYKVDSDDV LEMWNRARNQ
FADQPELLAR PMIIVPTYNE LKKTIAGLEN LDRSITWHEV SSNSPLVPKT GGLVCTPYVQ
TGIDIKPAPS ILIDSGRDVI VHKGRLVTPH PYTDEKTNEQ RVNRVGRTMD GVVIQPQLAG
TGNPPVKYPS GIFFSSELVA GQYKVPRLTK VNGCVHPELP YMSIKYTSEL SDPAKAREEE
QSVTKSLLFI HLMALAGVRQ SEWALRYNRY FELHLPFGED EDHLERILTS GKLRYANHIP
VDMAMQLLGN GHVTWGIGGV PTITRPRYPC DGMWVEDPSS RKSYAHKVLL HQREHAEIGM
WQAQVNELRA QNLALQSQLR SACTRRSTAG RILRHTRPPD IPVCG


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