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Olfactory receptor 2J3 (Hs6M1-3) (Olfactory receptor OR6-16) (OR6-6) (Olfactory receptor 6-6)

 OR2J3_HUMAN             Reviewed;         311 AA.
O76001; B0UY52; B9EH11; Q5SUJ7; Q6IF25; Q96R15; Q9GZK5; Q9GZL4;
Q9GZL5;
20-JUN-2001, integrated into UniProtKB/Swiss-Prot.
01-NOV-1998, sequence version 1.
23-MAY-2018, entry version 158.
RecName: Full=Olfactory receptor 2J3;
AltName: Full=Hs6M1-3;
AltName: Full=Olfactory receptor OR6-16;
Short=OR6-6;
Short=Olfactory receptor 6-6;
Name=OR2J3;
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND VARIANTS ALA-113; GLN-226;
ILE-228 AND MET-261.
Ziegler A., Ehlers A., Forbes S.A., Trowsdale J., Uchanska-Ziegler B.,
Volz A., Younger R., Beck S.;
"Polymorphic olfactory receptor genes and HLA loci constitute extended
haplotypes.";
(In) Kasahara M. (eds.);
Major histocompatibility complex-evolution, structure, and function,
pp.110-130, Springer-Verlag, Tokyo (2000).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], AND VARIANT MET-261.
PubMed=14574404; DOI=10.1038/nature02055;
Mungall A.J., Palmer S.A., Sims S.K., Edwards C.A., Ashurst J.L.,
Wilming L., Jones M.C., Horton R., Hunt S.E., Scott C.E.,
Gilbert J.G.R., Clamp M.E., Bethel G., Milne S., Ainscough R.,
Almeida J.P., Ambrose K.D., Andrews T.D., Ashwell R.I.S.,
Babbage A.K., Bagguley C.L., Bailey J., Banerjee R., Barker D.J.,
Barlow K.F., Bates K., Beare D.M., Beasley H., Beasley O., Bird C.P.,
Blakey S.E., Bray-Allen S., Brook J., Brown A.J., Brown J.Y.,
Burford D.C., Burrill W., Burton J., Carder C., Carter N.P.,
Chapman J.C., Clark S.Y., Clark G., Clee C.M., Clegg S., Cobley V.,
Collier R.E., Collins J.E., Colman L.K., Corby N.R., Coville G.J.,
Culley K.M., Dhami P., Davies J., Dunn M., Earthrowl M.E.,
Ellington A.E., Evans K.A., Faulkner L., Francis M.D., Frankish A.,
Frankland J., French L., Garner P., Garnett J., Ghori M.J.,
Gilby L.M., Gillson C.J., Glithero R.J., Grafham D.V., Grant M.,
Gribble S., Griffiths C., Griffiths M.N.D., Hall R., Halls K.S.,
Hammond S., Harley J.L., Hart E.A., Heath P.D., Heathcott R.,
Holmes S.J., Howden P.J., Howe K.L., Howell G.R., Huckle E.,
Humphray S.J., Humphries M.D., Hunt A.R., Johnson C.M., Joy A.A.,
Kay M., Keenan S.J., Kimberley A.M., King A., Laird G.K., Langford C.,
Lawlor S., Leongamornlert D.A., Leversha M., Lloyd C.R., Lloyd D.M.,
Loveland J.E., Lovell J., Martin S., Mashreghi-Mohammadi M.,
Maslen G.L., Matthews L., McCann O.T., McLaren S.J., McLay K.,
McMurray A., Moore M.J.F., Mullikin J.C., Niblett D., Nickerson T.,
Novik K.L., Oliver K., Overton-Larty E.K., Parker A., Patel R.,
Pearce A.V., Peck A.I., Phillimore B.J.C.T., Phillips S., Plumb R.W.,
Porter K.M., Ramsey Y., Ranby S.A., Rice C.M., Ross M.T., Searle S.M.,
Sehra H.K., Sheridan E., Skuce C.D., Smith S., Smith M., Spraggon L.,
Squares S.L., Steward C.A., Sycamore N., Tamlyn-Hall G., Tester J.,
Theaker A.J., Thomas D.W., Thorpe A., Tracey A., Tromans A., Tubby B.,
Wall M., Wallis J.M., West A.P., White S.S., Whitehead S.L.,
Whittaker H., Wild A., Willey D.J., Wilmer T.E., Wood J.M., Wray P.W.,
Wyatt J.C., Young L., Younger R.M., Bentley D.R., Coulson A.,
Durbin R.M., Hubbard T., Sulston J.E., Dunham I., Rogers J., Beck S.;
"The DNA sequence and analysis of human chromosome 6.";
Nature 425:805-811(2003).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], AND VARIANT MET-261.
TISSUE=Testis;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[4]
NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 71-286.
PubMed=12213199; DOI=10.1006/geno.2002.6830;
Fuchs T., Malecova B., Linhart C., Sharan R., Khen M., Herwig R.,
Shmulevich D., Elkon R., Steinfath M., O'Brien J.K., Radelof U.,
Lehrach H., Lancet D., Shamir R.;
"DEFOG: a practical scheme for deciphering families of genes.";
Genomics 80:295-302(2002).
[5]
IDENTIFICATION.
PubMed=14983052; DOI=10.1073/pnas.0307882100;
Malnic B., Godfrey P.A., Buck L.B.;
"The human olfactory receptor gene family.";
Proc. Natl. Acad. Sci. U.S.A. 101:2584-2589(2004).
[6]
ERRATUM.
Malnic B., Godfrey P.A., Buck L.B.;
Proc. Natl. Acad. Sci. U.S.A. 101:7205-7205(2004).
[7]
FUNCTION, POLYMORPHISM, VARIANTS ALA-113 AND GLN-226, AND
CHARACTERIZATION OF VARIANTS ALA-113 AND GLN-226.
PubMed=22714804; DOI=10.1093/chemse/bjs049;
McRae J.F., Mainland J.D., Jaeger S.R., Adipietro K.A., Matsunami H.,
Newcomb R.D.;
"Genetic variation in the odorant receptor OR2J3 is associated with
the ability to detect the 'grassy' smelling odor, cis-3-hexen-1-ol.";
Chem. Senses 37:585-593(2012).
-!- FUNCTION: Odorant receptor involved in the detection of the flavor
compound cis-3-hexen-1-ol (C3HEX), a compound typically described
as 'green grassy' or the smell of 'cut grass'.
{ECO:0000269|PubMed:22714804}.
-!- SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein.
-!- POLYMORPHISM: Variants Ala-113 and Gln-226 exhibit a reduced
ability to smell C3HEX [MIM:615082]. When both variants are
present in the same haplotype (allele 6M1-3*02), the response to
C3HEX is abolished. African populations have a higher proportion
of the C3HEX-nonresponsive haplotype than other populations. All
haplotypes containing Gln-226 show low levels of surface
expression. {ECO:0000269|PubMed:22714804}.
-!- SIMILARITY: Belongs to the G-protein coupled receptor 1 family.
{ECO:0000255|PROSITE-ProRule:PRU00521}.
-!- WEB RESOURCE: Name=Human Olfactory Receptor Data Exploratorium
(HORDE);
URL="http://genome.weizmann.ac.il/horde/card/index/symbol:OR2J3";
-!- WEB RESOURCE: Name=Protein Spotlight; Note=The intricacy of a
smell - Issue 150 of July 2013;
URL="https://web.expasy.org/spotlight/back_issues/150";
-----------------------------------------------------------------------
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EMBL; AJ302547; CAC20472.1; -; Genomic_DNA.
EMBL; AJ302548; CAC20473.1; -; Genomic_DNA.
EMBL; AJ302549; CAC20474.1; -; Genomic_DNA.
EMBL; AJ302550; CAC20475.1; -; Genomic_DNA.
EMBL; AJ302551; CAC20476.1; -; Genomic_DNA.
EMBL; AJ302552; CAC21440.1; -; Genomic_DNA.
EMBL; AJ302553; CAC21441.1; -; Genomic_DNA.
EMBL; AJ302554; CAC21442.1; -; Genomic_DNA.
EMBL; AJ302555; CAC21443.1; -; Genomic_DNA.
EMBL; AJ302556; CAC21444.1; -; Genomic_DNA.
EMBL; AJ302557; CAC20477.1; -; Genomic_DNA.
EMBL; AJ302558; CAC20478.1; -; Genomic_DNA.
EMBL; AL645937; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AL022727; CAA18783.1; -; Genomic_DNA.
EMBL; AL662852; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AL929561; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; BX248093; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; CR547123; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; CR388415; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; CR942175; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; BC136973; AAI36974.1; -; mRNA.
EMBL; BC136975; AAI36976.1; -; mRNA.
EMBL; AF399630; AAK95115.1; -; Genomic_DNA.
EMBL; BK004437; DAA04835.1; -; Genomic_DNA.
CCDS; CCDS43433.1; -.
RefSeq; NP_001005216.2; NM_001005216.3.
UniGene; Hs.738947; -.
ProteinModelPortal; O76001; -.
SMR; O76001; -.
STRING; 9606.ENSP00000366374; -.
EPD; O76001; -.
PaxDb; O76001; -.
PeptideAtlas; O76001; -.
PRIDE; O76001; -.
Ensembl; ENST00000377169; ENSP00000366374; ENSG00000204701.
Ensembl; ENST00000383651; ENSP00000373147; ENSG00000206522.
Ensembl; ENST00000414140; ENSP00000390144; ENSG00000232178.
Ensembl; ENST00000418630; ENSP00000400546; ENSG00000233618.
Ensembl; ENST00000419260; ENSP00000408783; ENSG00000229866.
Ensembl; ENST00000428081; ENSP00000388392; ENSG00000226271.
Ensembl; ENST00000430478; ENSP00000388205; ENSG00000233636.
GeneID; 442186; -.
KEGG; hsa:442186; -.
UCSC; uc011dll.4; human.
CTD; 442186; -.
DisGeNET; 442186; -.
EuPathDB; HostDB:ENSG00000204701.1; -.
GeneCards; OR2J3; -.
H-InvDB; HIX0165965; -.
H-InvDB; HIX0166175; -.
H-InvDB; HIX0201061; -.
H-InvDB; HIX0201063; -.
H-InvDB; HIX0201071; -.
H-InvDB; HIX0201073; -.
H-InvDB; HIX0201086; -.
H-InvDB; HIX0201090; -.
H-InvDB; HIX0201106; -.
H-InvDB; HIX0201108; -.
HGNC; HGNC:8261; OR2J3.
MalaCards; OR2J3; -.
MIM; 615016; gene.
MIM; 615082; phenotype.
neXtProt; NX_O76001; -.
PharmGKB; PA32178; -.
eggNOG; ENOG410JAWR; Eukaryota.
eggNOG; ENOG4111DPD; LUCA.
HOVERGEN; HBG017625; -.
InParanoid; O76001; -.
KO; K04257; -.
OrthoDB; EOG09370HYW; -.
PhylomeDB; O76001; -.
TreeFam; TF336512; -.
Reactome; R-HSA-381753; Olfactory Signaling Pathway.
GeneWiki; OR2J3; -.
GenomeRNAi; 442186; -.
PRO; PR:O76001; -.
Proteomes; UP000005640; Chromosome 6.
Bgee; ENSG00000204701; -.
CleanEx; HS_OR2J3; -.
ExpressionAtlas; O76001; baseline and differential.
Genevisible; O76001; HS.
GO; GO:0016021; C:integral component of membrane; IBA:GO_Central.
GO; GO:0005886; C:plasma membrane; TAS:Reactome.
GO; GO:0004930; F:G-protein coupled receptor activity; IEA:UniProtKB-KW.
GO; GO:0004984; F:olfactory receptor activity; IBA:GO_Central.
GO; GO:0007186; P:G-protein coupled receptor signaling pathway; IBA:GO_Central.
GO; GO:0007608; P:sensory perception of smell; IBA:GO_Central.
InterPro; IPR000276; GPCR_Rhodpsn.
InterPro; IPR017452; GPCR_Rhodpsn_7TM.
InterPro; IPR000725; Olfact_rcpt.
Pfam; PF13853; 7tm_4; 1.
PRINTS; PR00237; GPCRRHODOPSN.
PRINTS; PR00245; OLFACTORYR.
PROSITE; PS00237; G_PROTEIN_RECEP_F1_1; 1.
PROSITE; PS50262; G_PROTEIN_RECEP_F1_2; 1.
1: Evidence at protein level;
Cell membrane; Complete proteome; Disulfide bond;
G-protein coupled receptor; Glycoprotein; Membrane; Olfaction;
Polymorphism; Receptor; Reference proteome; Sensory transduction;
Transducer; Transmembrane; Transmembrane helix.
CHAIN 1 311 Olfactory receptor 2J3.
/FTId=PRO_0000150484.
TOPO_DOM 1 28 Extracellular. {ECO:0000255}.
TRANSMEM 29 52 Helical; Name=1. {ECO:0000255}.
TOPO_DOM 53 60 Cytoplasmic. {ECO:0000255}.
TRANSMEM 61 82 Helical; Name=2. {ECO:0000255}.
TOPO_DOM 83 103 Extracellular. {ECO:0000255}.
TRANSMEM 104 123 Helical; Name=3. {ECO:0000255}.
TOPO_DOM 124 142 Cytoplasmic. {ECO:0000255}.
TRANSMEM 143 161 Helical; Name=4. {ECO:0000255}.
TOPO_DOM 162 198 Extracellular. {ECO:0000255}.
TRANSMEM 199 222 Helical; Name=5. {ECO:0000255}.
TOPO_DOM 223 239 Cytoplasmic. {ECO:0000255}.
TRANSMEM 240 262 Helical; Name=6. {ECO:0000255}.
TOPO_DOM 263 275 Extracellular. {ECO:0000255}.
TRANSMEM 276 295 Helical; Name=7. {ECO:0000255}.
TOPO_DOM 296 311 Cytoplasmic. {ECO:0000255}.
CARBOHYD 8 8 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
DISULFID 100 192 {ECO:0000255|PROSITE-ProRule:PRU00521}.
VARIANT 113 113 T -> A (in allele 6M1-3*02; decreased
response to C3HEX; dbSNP:rs28757581).
{ECO:0000269|PubMed:22714804,
ECO:0000269|Ref.1}.
/FTId=VAR_010949.
VARIANT 226 226 R -> Q (in allele 6M1-3*02; decreased
response to C3HEX; dbSNP:rs3749977).
{ECO:0000269|PubMed:22714804,
ECO:0000269|Ref.1}.
/FTId=VAR_010950.
VARIANT 228 228 V -> I (in allele 6M1-3*03;
dbSNP:rs3130764). {ECO:0000269|Ref.1}.
/FTId=VAR_010951.
VARIANT 261 261 I -> M (in allele 6M1-3*03 and allele
6M1-3*04; dbSNP:rs3130765).
{ECO:0000269|PubMed:14574404,
ECO:0000269|PubMed:15489334,
ECO:0000269|Ref.1}.
/FTId=VAR_010952.
SEQUENCE 311 AA; 34950 MW; 84201145B9D5AA68 CRC64;
MNDDGKVNAS SEGYFILVGF SNWPHLEVVI FVVVLIFYLM TLIGNLFIII LSYLDSHLHT
PMYFFLSNLS FLDLCYTTSS IPQLLVNLWG PEKTISYAGC MIQLYFVLAL GTTECVLLVV
MSYDRYAAVC RPLHYTVLMH PRFCHLLAVA SWVSGFTNSA LHSSFTFWVP LCGHRQVDHF
FCEVPALLRL SCVDTHVNEL TLMITSSIFV LIPLILILTS YGAIVRAVLR MQSTTGLQKV
FGTCGAHLMA VSLFFIPAMC IYLQPPSGNS QDQGKFIALF YTVVTPSLNP LIYTLRNKVV
RGAVKRLMGW E


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